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List of works by Quanhu Sheng

A Randomized Phase II Neoadjuvant Study of Cisplatin, Paclitaxel With or Without Everolimus in Patients with Stage II/III Triple-Negative Breast Cancer (TNBC): Responses and Long-term Outcome Correlated with Increased Frequency of DNA Damage Respons

scientific article

A comparative proteomic strategy for subcellular proteome research: ICAT approach coupled with bioinformatics prediction to ascertain rat liver mitochondrial proteins and indication of mitochondrial localization for catalase.

scientific article

A computational approach to characterizing bond linkages of glycan isomers using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry

scientific article

A fully automated 2-D LC-MS method utilizing online continuous pH and RP gradients for global proteome analysis

scientific article published on 01 December 2007

A high-throughput approach for subcellular proteome: identification of rat liver proteins using subcellular fractionation coupled with two-dimensional liquid chromatography tandem mass spectrometry and bioinformatic analysis

scientific article

A micro-RNA expression signature for human NAFLD progression

scientific article published on 13 February 2016

A peptide-retrieval strategy enables significant improvement of quantitative performance without compromising confidence of identification

scientific article published on 26 November 2016

A platform to standardize, store, and visualize proteomics experimental data

scientific article

Acquisition of aneuploidy drives mutant p53-associated gain-of-function phenotypes

scientific article published on 31 August 2021

Advanced heat map and clustering analysis using heatmap3.

scientific article

BET bromodomain proteins regulate enhancer function during adipogenesis.

scientific article published on 14 February 2018

Beta cell secretion of miR-375 to HDL is inversely associated with insulin secretion

scientific article published on 07 March 2019

Bioinformatic analysis of endogenous and exogenous small RNAs on lipoproteins

scientific article published on 13 August 2018

BuildSummary: using a group-based approach to improve the sensitivity of peptide/protein identification in shotgun proteomics

scientific article

Chronic rhinosinusitis in elderly patients is associated with an exaggerated neutrophilic proinflammatory response to pathogenic bacteria

scientific article published on 22 November 2018

Clinical and Biological Insights Into Combined Post- and Pre-Capillary Pulmonary Hypertension.

scientific article published on December 2016

Clinical and genetic associations with prostacyclin response in pulmonary arterial hypertension

scientific article published on 24 August 2018

Comparative study of exome copy number variation estimation tools using array comparative genomic hybridization as control

scientific article published on 4 November 2013

Comparison of a proteomic approach with a microarray-based approach to detect exons in the mouse genome

scientific article published on 01 November 2006

Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue.

scientific article

Comprehensive evaluation of extracellular small RNA isolation methods from serum in high throughput sequencing.

scientific article published on 07 January 2017

Comprehensive profiling of phosphopeptides based on anion exchange followed by flow-through enrichment with titanium dioxide (AFET).

scientific article published in September 2010

Concurrent quantification of proteome and phosphoproteome to reveal system-wide association of protein phosphorylation and gene expression.

scientific article

Corrigendum to "Comparative Study of Exome Copy Number Variation Estimation Tools Using Array Comparative Genomic Hybridization as Control".

scientific article published on 18 July 2017

De novo identification and quantification of single amino-acid variants in human brain.

scientific article published on 9 July 2014

Delicate analysis of post-translational modifications on Dishevelled 3.

scientific article published in June 2012

Detection of internal exon deletion with exon Del.

scientific article

Development and Validation of a MicroRNA Panel to Differentiate Between Patients with Rheumatoid Arthritis or Systemic Lupus Erythematosus and Controls

scientific article published on 15 May 2019

Directed Solutions to Address Differences in Access to Liver Transplantation.

scientific article published on 24 April 2018

Dual inhibition of endothelial miR-92a-3p and miR-489-3p reduces renal injury-associated atherosclerosis

scientific article published on 30 January 2019

DupChecker: a bioconductor package for checking high-throughput genomic data redundancy in meta-analysis

scientific article

Dynamics of Zebrafish Heart Regeneration Using an HPLC-ESI-MS/MS Approach.

scientific article published on 25 January 2018

Fast and accurate identification of semi-tryptic peptides in shotgun proteomics

scientific article published on 22 November 2007

Fully automatic separation and identification of phosphopeptides by continuous pH-gradient anion exchange online coupled with reversed-phase liquid chromatography mass spectrometry

scientific article published on 01 January 2009

Heatmap3: an improved heatmap package with more powerful and convenient features

Heterozygosity Ratio, a Robust Global Genomic Measure of Autozygosity and Its Association with Height and Disease Risk

scientific article

High-Resolution Mapping of RNA Polymerases Identifies Mechanisms of Sensitivity and Resistance to BET Inhibitors in t(8;21) AML.

scientific article published on 03 August 2016

High-coverage proteome analysis reveals the first insight of protein modification systems in the pathogenic spirochete Leptospira interrogans

scientific article published on 17 November 2009

High-sensitivity analysis of human plasma proteome by immobilized isoelectric focusing fractionation coupled to mass spectrometry identification

scientific article published on 01 July 2005

ICan: an optimized ion-current-based quantification procedure with enhanced quantitative accuracy and sensitivity in biomarker discovery

scientific article

Illumina human exome genotyping array clustering and quality control

scientific article published on 16 October 2014

Immu-Mela: An open resource for exploring immunotherapy-related multidimensional genomic profiles in melanoma

scientific article published on 14 May 2021

Isolation of High-density Lipoproteins for Non-coding Small RNA Quantification.

scientific article

Large Scale Phosphoproteome Profiles Comprehensive Features of Mouse Embryonic Stem Cells ⬇️

scientific article published on December 13, 2010

Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data

scientific article

Large-scale identification of human biliary proteins from a cholesterol stone patient using a proteomic approach

scientific article published in January 2005

MicroRNAs and tRNA-derived fragments predict the transformation of myelodysplastic syndromes to acute myeloid leukemia

scientific article published on 13 January 2017

Monitoring newly synthesized proteins over the adult life span of Caenorhabditis elegans.

scientific article published on 25 February 2015

Multi-perspective quality control of Illumina RNA sequencing data analysis.

scientific article

MultiRankSeq: multiperspective approach for RNAseq differential expression analysis and quality control

scientific article

Non-canonical RNA-DNA differences and other human genomic features are enriched within very short tandem repeats

scientific article published on 08 June 2020

O18Quant: a semiautomatic strategy for quantitative analysis of high-resolution 16O/18O labeled data.

scientific article

Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data

scientific article

Patterns of olfactory dysfunction in chronic rhinosinusitis identified by hierarchical cluster analysis and machine learning algorithms

scientific article published on 28 November 2018

Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument

scientific article

Practicability of detecting somatic point mutation from RNA high throughput sequencing data

scientific article

Prefractionation of proteome by liquid isoelectric focusing prior to two-dimensional liquid chromatography mass spectrometric identification

scientific article published on 01 July 2005

Preprocessing significantly improves the peptide/protein identification sensitivity of high-resolution isobarically labeled tandem mass spectrometry data

scientific article

Protein phosphorylation and expression profiling by Yin-yang multidimensional liquid chromatography (Yin-yang MDLC) mass spectrometry

scientific article published on 01 January 2007

ProteinQuant Suite: a bundle of automated software tools for label-free quantitative proteomics

scientific article

Proteomic analysis of SARS associated coronavirus using two-dimensional liquid chromatography mass spectrometry and one-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis followed by mass spectroemtric analysis

scientific article published in May 2004

Proteomic analysis with integrated multiple dimensional liquid chromatography/mass spectrometry based on elution of ion exchange column using pH steps

scientific article published on 01 September 2005

Proteomic changes in the photoreceptor outer segment upon intense light exposure

scientific article published on February 2010

Quantitative Proteomics Reveal up-regulated Protein Expression of the SET Complex Associated with Hepatocellular Carcinoma ⬇️

scientific article published on December 19, 2011

Quantitative comparison of sarcomeric phosphoproteomes of neonatal and adult rat hearts

scientific article

Quantitative detection of single amino acid polymorphisms by targeted proteomics

scientific article published on 01 October 2011

RNA Sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data Mining

scientific article

RNAseqPS: A Web Tool for Estimating Sample Size and Power for RNAseq Experiment.

scientific article

Recent Advances in High Throughput Sequencing Analysis.

scientific article published on 19 June 2017

RnaSeqSampleSize: real data based sample size estimation for RNA sequencing.

scientific article published on 30 May 2018

SRMBuilder: a user-friendly tool for selected reaction monitoring data analysis.

scientific article

Serum Proteome Changes in Healthy Subjects with Different Genotypes of NOS1AP in the Chinese Population

scientific article published on 7 April 2013

State-Based Liver Distribution: Broad Sharing With Less Harm to Vulnerable and Underserved Communities Compared With Concentric Circles

scientific article published on 14 March 2019

Strategies for processing and quality control of Illumina genotyping arrays.

scientific article published on 20 February 2017

Systematic assessment of survey scan and MS2-based abundance strategies for label-free quantitative proteomics using high-resolution MS data.

scientific article

Targeting MYCN-expressing triple-negative breast cancer with BET and MEK inhibitors

scientific article published on 01 March 2020

The Landscape of Small Non-Coding RNAs in Triple-Negative Breast Cancer

scientific article published on 10 January 2018

The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data.

scientific article published on 3 October 2017

The human plasma proteome: analysis of Chinese serum using shotgun strategy

scientific article published on 01 August 2005

Three-stage quality control strategies for DNA re-sequencing data

scientific article

Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes

scientific article published on 24 September 2015

beRBP: binding estimation for human RNA-binding proteins.

scientific article published in March 2019

lncRNA expression in the auditory forebrain during postnatal development

scientific article published on 17 August 2016

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