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List of works by Simon J. Cockell

A RelA(p65) Thr505 phospho-site mutation reveals an important mechanism regulating NF-κB-dependent liver regeneration and cancer

scientific article published on 8 February 2016

A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren's Syndrome

scientific article published on 22 December 2015

A distributed computational search strategy for the identification of diagnostics targets: application to finding aptamer targets for methicillin-resistant staphylococci

scientific article published on 30 June 2014

Acknowledging contributions to online expert assistance

An Integrated Data Driven Approach to Drug Repositioning Using Gene-Disease Associations

scientific article

An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning

scientific article published on 24 January 2019

An integrated dataset for in silico drug discovery

scientific article

Analysis of primary visual cortex in dementia with Lewy bodies indicates GABAergic involvement associated with recurrent complex visual hallucinations

scientific article

B-cell activity markers are associated with different disease activity domains in primary Sjögren's syndrome.

scientific article published on 28 March 2018

Bayesian integration of networks without gold standards

scientific article published on 6 April 2012

Changes in protein expression profiles between a low phytic acid rice ( Oryza sativa L. Ssp. japonica) line and its parental line: a proteomic and bioinformatic approach

scientific article published in June 2010

Contribution of natural antisense transcription to an endogenous siRNA signature in human cells.

scientific article published on 13 January 2014

Cross platform analysis of transcriptomic data identifies ageing has distinct and opposite effects on tendon in males and females.

scientific article published on 31 October 2017

Customizable views on semantically integrated networks for systems biology.

scientific article published on 16 March 2011

Deconstructing Retinal Organoids: Single Cell RNA-Seq Reveals the Cellular Components of Human Pluripotent Stem Cell-Derived Retina

scientific article published on 12 January 2019

Epigenetic landscape correlates with genetic subtype but does not predict outcome in childhood acute lymphoblastic leukemia

scientific article

Genetic Networks Required to Coordinate Chromosome Replication by DNA Polymerases α, δ, and ε in Saccharomyces cerevisiae.

scientific article published on 21 August 2015

Genome-wide ChIP-seq analysis of human TOP2B occupancy in MCF7 breast cancer epithelial cells

scientific article published on 12 October 2015

Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort

scientific article published on 13 April 2020

Guidelines for reporting the use of gel image informatics in proteomics

scientific article published on 01 July 2010

High-throughput sequencing identifies aetiology-dependent differences in ductular reaction in human chronic liver disease

scientific article published on 30 January 2019

Influence of Genetic Variations in Selenoprotein Genes on the Pattern of Gene Expression after Supplementation with Brazil Nuts.

scientific article published on 11 July 2017

MRE11 facilitates the removal of human topoisomerase II complexes from genomic DNA.

scientific article

Mechanical-Stress-Related Epigenetic Regulation of <i>ZIC1</i> Transcription Factor in the Etiology of Postmenopausal Osteoporosis

scientific article published on 09 March 2022

Mining integrated semantic networks for drug repositioning opportunities

scientific article published on 19 January 2016

Pax9 is required for cardiovascular development and interacts with Tbx1 in the pharyngeal endoderm to control 4th pharyngeal arch artery morphogenesis

scientific article published on 23 September 2019

Pro-inflammatory cytokine and high doses of ionizing radiation have similar effects on the expression of NF-kappaB-dependent genes.

scientific article published on 21 February 2018

RRAD, IL4I1, CDKN1A, and SERPINE1 genes are potentially co-regulated by NF-κB and p53 transcription factors in cells exposed to high doses of ionizing radiation

article

Regulation of p53 and Rb links the alternative NF-κB pathway to EZH2 expression and cell senescence.

scientific article published on 25 September 2014

SIRT1 affects DNA methylation of polycomb group protein target genes, a hotspot of the epigenetic shift observed in ageing

scientific article published on 24 June 2015

Structure-based evaluation of in silico predictions of protein-protein interactions using Comparative Docking

scientific article published on 18 January 2007

Structure-function studies of an engineered scaffold protein derived from Stefin A. II: Development and applications of the SQT variant

scientific article

The NF-κB subunit c-Rel regulates Bach2 tumour suppressor expression in B-cell lymphoma

scientific article published on 2 November 2015

The zinc finger protein ZNF658 regulates the transcription of genes involved in zinc homeostasis and affects ribosome biogenesis through the zinc transcriptional regulatory element

scientific article

Three Steps to Heaven: Semantic Publishing in a Real World Workflow

article by Phillip Lord et al published 8 November 2012 in Future Internet

Transcriptomic profiling across the nonalcoholic fatty liver disease spectrum reveals gene signatures for steatohepatitis and fibrosis

scientific article published on 01 December 2020

Transcriptomics and proteomics show that selenium affects inflammation, cytoskeleton, and cancer pathways in human rectal biopsies

scientific article published on 21 April 2016

Utility of B-13 progenitor-derived hepatocytes in hepatotoxicity and genotoxicity studies

scientific article

Zinc sensing by metal-responsive transcription factor 1 (MTF1) controls metallothionein and ZnT1 expression to buffer the sensitivity of the transcriptome response to zinc

scientific article published on 29 January 2016