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List of works by Joseph Zaia

A Perspective on the Confident Comparison of Glycoprotein Site-Specific Glycosylation in Sample Cohorts

scientific article published on 31 December 2019

A binding site for chlorambucil on metallothionein

scientific article

A chip-based amide-HILIC LC/MS platform for glycosaminoglycan glycomics profiling

scientific article published on February 2009

A computational framework for heparan sulfate sequencing using high-resolution tandem mass spectra

scientific article published on 12 June 2014

A liquid chromatography-mass spectrometry-based approach to characterize the substrate specificity of mammalian heparanase

scientific article

A review of methods for interpretation of glycopeptide tandem mass spectral data.

scientific article

A small molecule glycosaminoglycan mimetic blocks Plasmodium invasion of the mosquito midgut

scientific article (publication date: 2013)

A tandem mass spectrometric approach to determination of chondroitin/dermatan sulfate oligosaccharide glycoforms.

scientific article published on 17 February 2006

A typical preparation of Francisella tularensis O-antigen yields a mixture of three types of saccharides

scientific article

Algorithms and design strategies towards automated glycoproteomics analysis.

scientific article published on 04 January 2016

Alternative O-glycosylation/O-phosphorylation of the murine estrogen receptor beta.

scientific article published on September 2000

Analysis of Glycosaminoglycans Using Mass Spectrometry

scientific article

Assignment of coronavirus spike protein site-specific glycosylation using GlycReSoft

At last, functional glycomics ⬇️

scientific article published on 01 January 2011

Calculating glycoprotein similarities from mass spectrometric data

scientific article published on 03 September 2020

Capillary electrophoresis-mass spectrometry of carbohydrates

scientific article

Characteristics of high energy collision-induced dissociation tandem Mass Spectra of Polycyclic aromatic Hydrocarbon diolepoxide adducted peptides

scientific article published in July 1994

Characterization and Quantification of Highly Sulfated Glycosaminoglycan Isomers by Gated-Trapped Ion Mobility Spectrometry Negative Electron Transfer Dissociation MS/MS

scientific article published on 31 January 2019

Characterization of heparin oligosaccharides binding specifically to antithrombin III using mass spectrometry

scientific article

Comment on "Computation of isotopic peak center-mass distribution by fourier transform".

scientific article published on 4 December 2013

Comparative glycomics of connective tissue glycosaminoglycans

scientific article published on April 2008

Comparative glycomics using a tetraplex stable-isotope coded tag.

scientific article

Comparison of Collisional and Electron-Based Dissociation Modes for Middle-Down Analysis of Multiply Glycosylated Peptides

scientific article published on 16 April 2018

Comparison of charged derivatives for high energy collision-induced dissociation tandem mass spectrometry

scientific article published in May 1995

Competing fragmentation processes in tandem mass spectra of heparin-like glycosaminoglycans

scientific article published on 01 November 2004

Complete Molecular Weight Profiling of Low-Molecular Weight Heparins Using Size Exclusion Chromatography-Ion Suppressor-High-Resolution Mass Spectrometry

scientific article published on 6 October 2016

Compositional analysis of glycosaminoglycans by electrospray mass spectrometry

scientific article

Confident assignment of site-specific glycosylation in complex glycoproteins in a single step

scientific article

Construction of a Database of Collision Cross Section Values for Glycopeptides, Glycans, and Peptides Determined by IM-MS.

scientific article published on 30 March 2017

Copurification of P6, MRP8, and MRP14 from human granulocytes and separation of individual proteins

scientific article published in August 1998

De novo sequencing of heparan sulfate oligosaccharides by electron-activated dissociation

scientific article

Decay accelerating factor (DAF) peptide sequences share homology with a consensus sequence found in the superfamily of structurally related complement proteins and other proteins including haptoglobin, factor XIII, beta 2-glycoprotein I, and the IL-

scientific article published on 01 April 1987

Deciphering the Mode of Action of the Processive Polysaccharide Modifying Enzyme Dermatan Sulfate Epimerase 1 by Hydrogen-Deuterium Exchange Mass Spectrometry

scientific article published on 30 November 2015

Deep Sequencing of Complex Proteoglycans: A Novel Strategy for High Coverage and Site-specific Identification of Glycosaminoglycan-linked Peptides

scientific article published on 17 May 2018

Detecting O-GlcNAc using in vitro sulfation

scientific article published on 5 May 2014

Differential Characterization and Classification of Tissue Specific Glycosaminoglycans by Tandem Mass Spectrometry and Statistical Methods.

scientific article

Disaccharide analysis of glycosaminoglycans using hydrophilic interaction chromatography and mass spectrometry

scientific article published on 3 January 2013

Discovery of a heparan sulfate 3-O-sulfation specific peeling reaction

scientific article published on 22 December 2014

Effective use of mass spectrometry for glycan and glycopeptide structural analysis

scientific article

Effects of restoring normoglycemia in type 1 diabetes on inflammatory profile and renal extracellular matrix structure after simultaneous pancreas and kidney transplantation

scientific article

Enantiospecificity of covalent adduct formation by benzo[a]pyrene anti-diol epoxide with human serum albumin.

scientific article

Expression regulation and function of heparan sulfate 6-O-endosulfatases in the spermatogonial stem cell niche

scientific article

Extended N-sulfated domains reside at the nonreducing end of heparan sulfate chains.

scientific article

Extracellular matrix proteomics in schizophrenia and Alzheimer's disease.

scientific article published on 6 September 2016

GlyTouCan 1.0--The international glycan structure repository

scientific article

GlycReSoft: a software package for automated recognition of glycans from LC/MS data

scientific article

Glycoform quantification of chondroitin/dermatan sulfate using a liquid chromatography-tandem mass spectrometry platform

scientific article published on February 2006

Glycomic and Proteomic Changes in Aging Brain Nigrostriatal Pathway

scientific article published on 18 June 2018

Glycomics analysis of mammalian heparan sulfates modified by the human extracellular sulfatase HSulf2.

scientific article

Glycosaminoglycan glycomics using mass spectrometry

scientific article

Glycosylation of Serum Clusterin in Wild-Type Transthyretin-Associated (ATTRwt) Amyloidosis: A Study of Disease-Associated Compositional Features Using Mass Spectrometry Analyses

scientific article published on 03 November 2020

Heparan sulfate 6-O-endosulfatases (Sulfs) coordinate the Wnt signaling pathways to regulate myoblast fusion during skeletal muscle regeneration.

scientific article

Heparan sulfate-protein binding specificity

scientific article published on July 2013

Heparan sulfate: Resilience factor and therapeutic target for cocaine abuse.

scientific article published on 24 October 2017

Highly sulfated nonreducing end-derived heparan sulfate domains bind fibroblast growth factor-2 with high affinity and are enriched in biologically active fractions

scientific article

Imaging specific cellular glycan structures using glycosyltransferases via click chemistry.

scientific article published on 25 November 2017

Improved hydrophilic interaction chromatography LC/MS of heparinoids using a chip with postcolumn makeup flow

scientific article published on January 2010

Improved liquid chromatography-MS/MS of heparan sulfate oligosaccharides via chip-based pulsed makeup flow

scientific article

Improved workup for glycosaminoglycan disaccharide analysis using CE with LIF detection

scientific article published on November 2008

In-Depth Matrisome and Glycoproteomic Analysis of Human Brain Glioblastoma Versus Control Tissue

scientific article published on 23 February 2022

Influence of charge state on product ion mass spectra and the determination of 4S/6S sulfation sequence of chondroitin sulfate oligosaccharides

scientific article published in August 2002

Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions.

scientific article published on 16 March 2016

Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012

scientific article published on 13 June 2013

Lectin-mediated binding and sialoglycans of porcine surfactant protein D synergistically neutralize influenza A virus

scientific article published in Journal of Biological Chemistry

MIRAGE: the minimum information required for a glycomics experiment

scientific article

Mass spectral profiling of glycosaminoglycans from histological tissue surfaces

scientific article published on 29 October 2013

Mass spectrometric method for determining the uronic acid epimerization in heparan sulfate disaccharides generated using nitrous acid

scientific article published on 20 August 2012

Mass spectrometry and glycomics

scientific article

Mass spectrometry of oligosaccharides.

scientific article

Measuring site-specific glycosylation similarity between influenza A virus variants with statistical certainty

scientific article published on 29 June 2020

Mesenchymal stem cell surface antigen SB-10 corresponds to activated leukocyte cell adhesion molecule and is involved in osteogenic differentiation

scientific article

Microfluidic Capillary Electrophoresis-Mass Spectrometry for Analysis of Monosaccharides, Oligosaccharides, and Glycopeptides

scientific article

Monitoring metal ion flux in reactions of metallothionein and drug-modified metallothionein by electrospray mass spectrometry.

scientific article

Multistage Tandem Mass Spectrometry of Chondroitin Sulfate and Dermatan Sulfate.

scientific article published on August 2011

Mutagenesis of surfactant protein D informed by evolution and x-ray crystallography enhances defenses against influenza A virus in vivo

scientific article

NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods

scientific article published on 07 October 2019

Negative Electron Transfer Dissociation Sequencing of 3-O-Sulfation-Containing Heparan Sulfate Oligosaccharides

scientific article published on 21 March 2018

Nematodes join the family of chondroitin sulfate-synthesizing organisms: Identification of an active chondroitin sulfotransferase in Caenorhabditis elegans

scientific article published on 05 October 2016

Non-reducing end labeling of heparan sulfate via click chemistry and a high throughput ELISA assay for heparanase

scientific article published on 26 December 2016

Oligosaccharide substrate preferences of human extracellular sulfatase Sulf2 using liquid chromatography-mass spectrometry based glycomics approaches

scientific article

Optimized extraction of glycosaminoglycans from normal and osteoarthritic cartilage for glycomics profiling

scientific article published on 15 September 2006

Organ-specific heparan sulfate structural phenotypes.

scientific article published on 25 February 2009

Phosphatidylethanolamine binding protein 4 (PEBP4) is a secreted protein and has multiple functions

scientific article published on 28 March 2016

Posttranslational modifications to human bone sialoprotein determined by mass spectrometry

scientific article

Protective B-cell epitopes of Francisella tularensis O-polysaccharide in a mouse model of respiratory tularaemia

scientific article

Proteomics, Glycomics, and Glycoproteomics of Matrisome Molecules

scientific article published on 30 August 2019

Relative Retention Time Estimation Improves N-Glycopeptide Identifications by LC-MS/MS

scientific article published on 10 April 2020

Reply to Savolainen: Organ- and Cell-specific GAG Chains

scientific article published in May 2009

Screening for anticoagulant heparan sulfate octasaccharides and fine structure characterization using tandem mass spectrometry

scientific article

Sensitive method for glycosaminoglycan analysis of tissue sections

scientific article published on 25 February 2018

Sequencing Heparan Sulfate Using HILIC LC-NETD-MS/MS

scientific article published on 29 August 2019

Serial in-solution digestion protocol for mass spectrometry-based glycomics and proteomics analysis

scientific article published on 20 April 2020

Size-exclusion chromatography of heparin oligosaccharides at high and low pressure

scientific article

Software for Peak Finding and Elemental Composition Assignment for Glycosaminoglycan Tandem Mass Spectra

article

Structural analysis of cartilage proteoglycans and glycoproteins using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

scientific article published in January 2000

Tags for the stable isotopic labeling of carbohydrates and quantitative analysis by mass spectrometry

scientific article

Tandem mass spectrometric determination of the 4S/6S sulfation sequence in chondroitin sulfate oligosaccharides

scientific article published in December 2001

Tandem mass spectrometric strategies for determination of sulfation positions and uronic acid epimerization in chondroitin sulfate oligosaccharides

scientific article published on 01 November 2003

Tandem mass spectrometry of heparan sulfate negative ions: sulfate loss patterns and chemical modification methods for improvement of product ion profiles

scientific article

Tandem mass spectrometry of sulfated heparin-like glycosaminoglycan oligosaccharides

scientific article

Targeted analysis of glycomics liquid chromatography/mass spectrometry data ⬇️

scientific article published on October 16, 2010

Targeting Human Cancer by a Glycosaminoglycan Binding Malaria Protein

scientific article published on October 2015

The SH-3 and SH-4 Antibodies Recognize Distinct Epitopes on CD73 from Human Mesenchymal Stem Cells

scientific article published on 01 November 2001

The binding sites of monoclonal antibodies to the nonreducing end ofFrancisella tularensis O-antigen accommodate mainly the terminal saccharide

scientific article

The correct molecular weight of myoglobin, a common calibrant for mass spectrometry

scientific article published in January 1992

The influence of sialylation on glycan negative ion dissociation and energetics

scientific article published on 17 April 2006

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.

scientific article published on 22 November 2016

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data

scientific article

The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets

scientific article

The monoclonal antibody SH-2, raised against human mesenchymal stem cells, recognizes an epitope on endoglin (CD105).

scientific article

The role of mobile protons in negative ion CID of oligosaccharides

scientific article

Top-Down Approach for the Direct Characterization of Low Molecular Weight Heparins Using LC-FT-MS ⬇️

scientific article published on September 26, 2012

Toward Automatic and Comprehensive Glycan Characterization by Online PGC-LC-EED MS/MS

scientific article published on 24 December 2019

Use of an informed search space maximizes confidence of site-specific assignment of glycoprotein glycosylation.

scientific article published on 12 October 2016

Why Glycosylation Matters in Building a Better Flu Vaccine

scientific article published on 11 October 2019

Workflow for combined proteomics and glycomics profiling from histological tissues

scientific article published on 24 September 2014

glypy: An Open Source Glycoinformatics Library

scientific article published on 30 July 2019

psims - A Declarative Writer for mzML and mzIdentML for Python

scientific article published on 18 December 2018

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