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Authors whose works are in public domain in at least one jurisdiction

List of works by Steven Kelly

A draft genome for the African crocodilian trypanosome Trypanosoma grayi

scientific article published on 5 August 2014

A modular and optimized single marker system for generating Trypanosoma brucei cell lines expressing T7 RNA polymerase and the tetracycline repressor.

scientific article published on February 2012

A taxonomic monograph of Ipomoea integrated across phylogenetic scales

scientific article published on 11 November 2019

Ab initio identification of novel regulatory elements in the genome of Trypanosoma brucei by Bayesian inference on sequence segmentation

scientific article

Adaptin evolution in kinetoplastids and emergence of the variant surface glycoprotein coat in African trypanosomatids ⬇️

scientific article published on January 19, 2013

An Ancestral Role for CONSTITUTIVE TRIPLE RESPONSE1 Proteins in Both Ethylene and Abscisic Acid Signaling

scientific article

Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes

scientific article published on 29 September 2010

Candidate regulators of Early Leaf Development in Maize Perturb Hormone Signalling and Secondary Cell Wall Formation When Constitutively Expressed in Rice.

scientific article

Characterization and differential nuclear localization of Nopp140 and a novel Nopp140-like protein in trypanosomes.

scientific article published on May 2006

Clust: automatic extraction of optimal co-expressed gene clusters from gene expression data

article

Codon choice directs constitutive mRNA levels in trypanosomes

scientific article published on 15 March 2018

Combined Chlorophyll Fluorescence and Transcriptomic Analysis Identifies the P3/P4 Transition as a Key Stage in Rice Leaf Photosynthetic Development.

scientific article

Deep evolutionary comparison of gene expression identifies parallel recruitment of trans-factors in two independent origins of C4 photosynthesis

scientific article

DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignments

scientific article

Dietary nitrogen alters codon bias and genome composition in parasitic microorganisms

scientific article (publication date: 15 November 2016)

Diversification of function by different isoforms of conventionally shared RNA polymerase subunits

scientific article published on 31 January 2007

Engineering biosynthesis of high-value compounds in photosynthetic organisms

scientific article published on 4 October 2016

Exon Skipping Is Correlated with Exon Circularization

scientific article published on 26 February 2015

Gene duplication accelerates the pace of protein gain and loss from plant organelles

scientific article published on 12 September 2018

Genome Sequence of Phytomonas françai, a Cassava (Manihot esculenta) Latex Parasite.

scientific article published on 12 January 2017

Genome organization is a major component of gene expression control in response to stress and during the cell division cycle in trypanosomes.

scientific article

Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis.

scientific article published on 15 September 2017

Genome-wide analysis reveals extensive functional interaction between DNA replication initiation and transcription in the genome of Trypanosoma brucei.

scientific article published on 12 July 2012

Genome-wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4 Kranz anatomy.

scientific article

Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns

scientific article (publication date: 6 May 2014)

MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments

scientific article

Metabolic quirks and the colourful history of the Euglena gracilis secondary plastid

scientific article published on 04 November 2019

Multiple mechanisms for enhanced plasmodesmata density in disparate subtypes of C4 grasses

scientific article published on 2 January 2018

Neofunctionalisation of basic helix-loop-helix proteins occurred when embryophytes colonised the land

scientific article published on 25 April 2019

Nitric oxide generated by the rice blast fungus Magnaporthe oryzae drives plant infection

scientific article published on 16 October 2012

Nuclear pore complex evolution: a trypanosome Mlp analogue functions in chromosomal segregation but lacks transcriptional barrier activity

scientific article

OMGene: mutual improvement of gene models through optimisation of evolutionary conservation

scientific article

OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations

scientific article

OrthoFinder2: fast and accurate phylogenomic orthology analysis from gene sequences

scientific article published on 8 November 2018

OrthoFinder: phylogenetic orthology inference for comparative genomics

scientific article published on 14 November 2019

OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy

scientific article published in 2015

Rubisco Adaptation Is More Limited by Phylogenetic Constraint Than by Catalytic Trade-off

scientific article published on 17 March 2021

SHOOT: phylogenetic gene search and ortholog inference

scientific article published on 28 March 2022

SLaP mapper: a webserver for identifying and quantifying spliced-leader addition and polyadenylation site usage in kinetoplastid genomes

scientific article

STAG: Species Tree Inference from All Genes

scientific article published on 19 February 2018

STRIDE: Species Tree Root Inference From Gene Duplication Events

scientific article published on 19 May 2017

Selection-driven cost-efficiency optimization of transcripts modulates gene evolutionary rate in bacteria

article

Shared origins of a key enzyme during the evolution of C4 and CAM metabolism

scientific article

Splicing of many human genes involves sites embedded within introns

scientific article published on 20 April 2015

Subdivision of Light Signaling Networks Contributes to Partitioning of C4 Photosynthesis

scientific article published on 20 December 2019

The continuing evolution of publishing in the biological sciences

scientific article published on 28 August 2018

The impact of widespread regulatory neofunctionalization on homeolog gene evolution following whole-genome duplication in maize.

scientific article

The molecular evolution of C4 photosynthesis: opportunities for understanding and improving the world's most productive plants

scientific article published on 01 February 2019

TransRate: reference free quality assessment of de-novo transcriptome assemblies

Transcriptome Sequence of the Bloodstream Form of Trypanoplasma borreli, a Hematozoic Parasite of Fish Transmitted by Leeches.

scientific article published on 2 March 2017

Two forward genetic screens for vein density mutants in sorghum converge on a cytochrome P450 gene in the brassinosteroid pathway.

scientific article published on 2 September 2015

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