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List of works by Peter Fineran

A GntR family transcriptional regulator (PigT) controls gluconate-mediated repression and defines a new, independent pathway for regulation of the tripyrrole antibiotic, prodigiosin, in Serratia

scientific article

A Unified Resource for Tracking Anti-CRISPR Names

scientific article published on 01 October 2018

A century of the phage: past, present and future

scientific article published on 9 November 2015

A jumbo phage that forms a nucleus-like structure evades CRISPR-Cas DNA targeting but is vulnerable to type III RNA-based immunity

scientific article published on 09 December 2019

A mobile restriction-modification system provides phage defence and resolves an epigenetic conflict with an antagonistic endonuclease

scientific article published on 01 April 2022

A nucleotidyltransferase toxin inhibits growth of Mycobacterium tuberculosis through inactivation of tRNA acceptor stems

scientific article published on 29 July 2020

A processed noncoding RNA regulates an altruistic bacterial antiviral system

scientific article

A widespread bacteriophage abortive infection system functions through a Type IV toxin-antitoxin mechanism.

scientific article

AbiEi Binds Cooperatively to the Type IV abiE Toxin-Antitoxin Operator Via a Positively-Charged Surface and Causes DNA Bending and Negative Autoregulation.

scientific article

Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs.

scientific article published on 27 February 2014

Advances in bacteriophage-mediated control of plant pathogens

scientific article

Anticancer and immunosuppressive properties of bacterial prodiginines

scientific article

Antitoxin autoregulation of M. tuberculosis toxin-antitoxin expression through negative cooperativity arising from multiple inverted repeat sequences

scientific article published on 10 June 2020

Bacterial dormancy curbs phage epidemics

scientific article published on 01 June 2019

Bioinformatic evidence of widespread priming in type I and II CRISPR-Cas systems

article

Biosynthesis of tripyrrole and beta-lactam secondary metabolites in Serratia: integration of quorum sensing with multiple new regulatory components in the control of prodigiosin and carbapenem antibiotic production

scientific article

Biotechnological exploitation of bacteriophage research

scientific article

CRISPR-Cas gene-editing reveals RsmA and RsmC act through FlhDC to repress the SdhE flavinylation factor and control motility and prodigiosin production in Serratia.

scientific article

CRISPR-Cas impedes archaeal mating

scientific article published on 01 January 2019

CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

scientific article published on 01 May 2022

CRISPR-Cas systems preferentially target the leading regions of MOBF conjugative plasmids.

scientific article published on 27 March 2013

CRISPR-Cas systems: beyond adaptive immunity

scientific article

CRISPR-Cas-Mediated Phage Resistance Enhances Horizontal Gene Transfer by Transduction.

scientific article published on 13 February 2018

CRISPR-Cas: Adapting to change

scientific article published on 6 April 2017

CRISPRDetect: A flexible algorithm to define CRISPR arrays

scientific article

CRISPRTarget: bioinformatic prediction and analysis of crRNA targets.

scientific article published on 14 March 2013

Chromosomal targeting by CRISPR-Cas systems can contribute to genome plasticity in bacteria.

scientific article published on September 2013

Complete DNA Sequence of Pseudomonas syringae pv. actinidiae, the Causal Agent of Kiwifruit Canker Disease.

scientific article published on 17 September 2015

Computational Detection of CRISPR/crRNA Targets.

scientific article published in January 2015

Conquering CRISPR: how phages overcome bacterial adaptive immunity

scientific article published on 24 October 2020

Correction: Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems

scientific article published on 4 April 2018

Crystal structure of the anti-CRISPR repressor Aca2

publication published on 08 June 2021

Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum

scientific article published in May 2011

Cytotoxic chromosomal targeting by CRISPR/Cas systems can reshape bacterial genomes and expel or remodel pathogenicity islands

scientific article

Degenerate target sites mediate rapid primed CRISPR adaptation.

scientific article

Different genetic and morphological outcomes for phages targeted by single or multiple CRISPR-Cas spacers

scientific article published on 01 May 2019

Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements

scientific article published on 06 November 2020

Diverse CRISPR-Cas Complexes Require Independent Translation of Small and Large Subunits from a Single Gene

scientific article published on 19 November 2020

Draft Genome Sequence of Serratia sp. Strain ATCC 39006, a Model Bacterium for Analysis of the Biosynthesis and Regulation of Prodigiosin, a Carbapenem, and Gas Vesicles.

scientific article published on 12 December 2013

Evolution of Pectobacterium Bacteriophage ΦM1 To Escape Two Bifunctional Type III Toxin-Antitoxin and Abortive Infection Systems through Mutations in a Single Viral Gene.

scientific article published on 3 February 2017

Evolution of virulence in a novel family of transmissible mega‐plasmids

scientific article published in 2021

Expanding the mass range for UVPD-based native top-down mass spectrometry

scientific article published on 01 July 2019

Function and regulation of clustered regularly interspaced short palindromic repeats (CRISPR) / CRISPR associated (Cas) systems.

scientific article

Functional genomics reveals the toxin-antitoxin repertoire and AbiE activity in Serratia

scientific article published on 19 October 2020

GalK limits type I-F CRISPR-Cas expression in a CRP-dependent manner

scientific article published on 01 June 2019

Gene regulation by engineered CRISPR-Cas systems

scientific article published on 15 March 2014

Genome Sequence of a Jumbo Bacteriophage That Infects the Kiwifruit Phytopathogen Pseudomonas syringae pv. actinidiae

scientific article published on 30 May 2019

Genome, Proteome and Structure of a T7-Like Bacteriophage of the Kiwifruit Canker Phytopathogen Pseudomonas syringae pv. actinidiae

scientific article published on 24 June 2015

Genome-wide correlation analysis suggests different roles of CRISPR-Cas systems in the acquisition of antibiotic resistance genes in diverse species

scientific article published on 01 May 2019

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

scientific article published on 08 July 2019

High viral abundance and low diversity are associated with increased CRISPR-Cas prevalence across microbial ecosystems

publication published on 09 November 2021

Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types

scientific article published on 01 November 2021

Identification and classification of bacterial Type III toxin-antitoxin systems encoded in chromosomal and plasmid genomes.

scientific article

Identification of bacteriophages for biocontrol of the kiwifruit canker phytopathogen Pseudomonas syringae pv. actinidiae

scientific article published on 31 January 2014

Imprecise Spacer Acquisition Generates CRISPR-Cas Immune Diversity through Primed Adaptation

scientific article published on 17 January 2019

In vivo protein interactions and complex formation in the Pectobacterium atrosepticum subtype I-F CRISPR/Cas System

scientific article

Inactivation of CRISPR-Cas systems by anti-CRISPR proteins in diverse bacterial species.

scientific article published on 13 June 2016

Integrated regulation involving quorum sensing, a two-component system, a GGDEF/EAL domain protein and a post-transcriptional regulator controls swarming and RhlA-dependent surfactant biosynthesis in Serratia

scientific article

Interference-driven spacer acquisition is dominant over naive and primed adaptation in a native CRISPR-Cas system

scientific article published on 3 October 2016

Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information

scientific article

Mutagenesis and functional characterization of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia

scientific article

Novel configurations of type I and II CRISPR-Cas systems in Corynebacterium diphtheriae

scientific article published on October 2013

PADLOC: a web server for the identification of antiviral defence systems in microbial genomes

scientific article published in 2022

Pectobacterium atrosepticum and Pectobacterium carotovorum Harbor Distinct, Independently Acquired Integrative and Conjugative Elements Encoding Coronafacic Acid that Enhance Virulence on Potato Stems

scientific article published on 31 March 2016

Phage ΦPan70, a Putative Temperate Phage, Controls Pseudomonas aeruginosa in Planktonic, Biofilm and Burn Mouse Model Assays

scientific article

Phage-based biocontrol strategies and their application in agriculture and aquaculture

scientific article published on 04 December 2018

PigS and PigP regulate prodigiosin biosynthesis in Serratia via differential control of divergent operons, which include predicted transporters of sulfur-containing molecules.

scientific article

PigZ, a TetR/AcrR family repressor, modulates secondary metabolism via the expression of a putative four-component resistance-nodulation-cell-division efflux pump, ZrpADBC, in Serratia sp. ATCC 39006.

scientific article published in July 2008

Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer.

scientific article published on 2 July 2014

Prokaryotic assembly factors for the attachment of flavin to complex II.

scientific article

Publisher Correction: Targeting of temperate phages drives loss of type I CRISPR-Cas systems

scientific article published on 01 March 2020

Quorum Sensing Controls Adaptive Immunity through the Regulation of Multiple CRISPR-Cas Systems

scientific article (publication date: 15 December 2016)

Reconstitution of CRISPR adaptation in vitro and its detection by PCR

scientific article published on 12 January 2019

Regulation of CRISPR-Cas adaptive immune systems.

scientific article published on 27 March 2017

Regulation of the Type I-F CRISPR-Cas system by CRP-cAMP and GalM controls spacer acquisition and interference

scientific article published on 24 May 2015

Remarkable Mechanisms in Microbes to Resist Phage Infections

scientific article published on 27 June 2014

Resistance is not futile: bacterial 'innate' and CRISPR-Cas 'adaptive' immune systems

scientific article published on 08 April 2019

Ribonucleases in bacterial toxin-antitoxin systems

scientific article published on 21 February 2013

SdhE is a conserved protein required for flavinylation of succinate dehydrogenase in bacteria

scientific article

Selectivity and self-assembly in the control of a bacterial toxin by an antitoxic noncoding RNA pseudoknot

scientific article

Spacer capture and integration by a type I-F Cas1-Cas2-3 CRISPR adaptation complex.

scientific article published on 13 June 2017

Structural plasticity and in vivo activity of Cas1 from the type I-F CRISPR-Cas system

scientific article

Targeting of temperate phages drives loss of type I CRISPR-Cas systems

scientific article published on 22 January 2020

The Cpf1 CRISPR-Cas protein expands genome-editing tools.

scientific article

The Gene Ontology Resource: 20 years and still GOing strong

article

The PhoBR two-component system regulates antibiotic biosynthesis in Serratia in response to phosphate

scientific article

The Rsm (Csr) post-transcriptional regulatory pathway coordinately controls multiple CRISPR-Cas immune systems

scientific article published on 01 September 2021

The arms race between bacteria and their phage foes

scientific article published on 15 January 2020

The autoregulator Aca2 mediates anti-CRISPR repression

scientific article published on 01 October 2019

The biosynthesis and regulation of bacterial prodiginines

scientific article

The conserved RGxxE motif of the bacterial FAD assembly factor SdhE is required for succinate dehydrogenase flavinylation and activity

scientific article

The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair

scientific article

The subtype I-F CRISPR-Cas system influences pathogenicity island retention in Pectobacterium atrosepticum via crRNA generation and Csy complex formation

scientific article published on December 2013

The succinate dehydrogenase assembly factor, SdhE, is required for the flavinylation and activation of fumarate reductase in bacteria.

scientific article published on 25 December 2013

Transposon insertion libraries for the characterization of mutants from the kiwifruit pathogen Pseudomonas syringae pv. actinidiae

scientific article

Type I-F CRISPR-Cas resistance against virulent phages results in abortive infection and provides population-level immunity

scientific article published on 04 December 2019

Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems.

scientific article

Variation at the common polysaccharide antigen locus drives lipopolysaccharide diversity within the Pseudomonas syringae species complex

scientific article published on 28 September 2020

Viral evasion of a bacterial suicide system by RNA-based molecular mimicry enables infectious altruism.

scientific article

Viral molecular mimicry circumvents abortive infection and suppresses bacterial suicide to make hosts permissive for replication

scientific article

Virulence and prodigiosin antibiotic biosynthesis in Serratia are regulated pleiotropically by the GGDEF/EAL domain protein, PigX.

scientific article

YgfX (CptA) is a multimeric membrane protein that interacts with the succinate dehydrogenase assembly factor SdhE (YgfY).

scientific article published on 8 May 2013

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