List of works by Srinivas Ramachandran

A Structural Model for Vinculin Insertion into PIP2-Containing Membranes and the Effect of Insertion on Vinculin Activation and Localization

scientific article published on 31 December 2016

A structural model of the pore-forming region of the skeletal muscle ryanodine receptor (RyR1)

scientific article

ATP hydrolysis at one of the two sites in ABC transporters initiates transport related conformational transitions

Abstract 3504: Debio 0507 primarily forms diaminocyclohexane-d(GpG) and -d(ApG) DNA adducts in HCT116 cells

Abstract IA09: Nucleosome barriers to transcription

article published in 2016

Asymmetric nucleosomes flank promoters in the budding yeast genome

scientific article published on 9 December 2014

Automated minimization of steric clashes in protein structures

scientific article

Capitalizing on disaster: Establishing chromatin specificity behind the replication fork

scientific article

Computational approaches to understanding protein aggregation in neurodegeneration

scientific article published on 11 March 2014

Corrigendum to “ATP hydrolysis at one of the two sites in ABC transporters initiates transport related conformational transitions” [Biochim. Biophys. Acta 1808 (2011) 2954–2964]

scholarly article published in BBA - Biomembranes

Debio 0507 primarily forms diaminocyclohexane-Pt-d(GpG) and -d(ApG) DNA adducts in HCT116 cells

scientific article published on 04 October 2011

Differences in Conformation and Conformational Dynamics Between Cisplatin and Oxaliplatin DNA Adducts

article published in 2009

Discrete molecular dynamics: an efficient and versatile simulation method for fine protein characterization

scientific article

Faculty of 1000 evaluation for A chromatin structure-based model accurately predicts DNA replication timing in human cells

Faculty of 1000 evaluation for Aspartate 112 is the selectivity filter of the human voltage-gated proton channel

Faculty of 1000 evaluation for Direct-coupling analysis of residue coevolution captures native contacts across many protein families

Faculty of 1000 evaluation for Dynamics and memory of heterochromatin in living cells

Faculty of 1000 evaluation for Genetic selection designed to stabilize proteins uncovers a chaperone called Spy

Faculty of 1000 evaluation for Mapping intact protein isoforms in discovery mode using top-down proteomics

Faculty of 1000 evaluation for Protein interface conservation across structure space

Faculty of 1000 evaluation for Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T

Faculty of 1000 evaluation for Structure of a nanobody-stabilized active state of the beta(2) adrenoceptor

Faculty of 1000 evaluation for The crystal structure of a voltage-gated sodium channel

Faculty of 1000 evaluation for alpha-Synuclein occurs physiologically as a helically folded tetramer that resists aggregation

Flanking Bases Influence the Nature of DNA Distortion by Platinum 1,2-Intrastrand (GG) Cross-Links

scientific article

Gaia: automated quality assessment of protein structure models

scientific article

Homology Modeling: Generating Structural Models to Understand Protein Function and Mechanism

JMJD5 couples with CDK9 to release the paused RNA polymerase II

scientific article published on 03 August 2020

MINCE-Seq: Mapping In Vivo Nascent Chromatin with EdU and Sequencing

scientific article published on 01 January 2018

New Models for Regulation of Vinculin by Actin and Phospholipids

Non-canonical Bromodomain within DNA-PKcs Promotes DNA Damage Response and Radioresistance through Recognizing an IR-Induced Acetyl-Lysine on H2AX

scientific article

Nucleosome dynamics during chromatin remodeling in vivo

scientific article published on 2 March 2016

Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase

scientific article published on March 2014

Pioneers Invade the Nucleosomal Landscape

scholarly article by Steven Henikoff published in July 2018

Pore dynamics and conductance of RyR1 transmembrane domain

scientific article

Precise genome-wide mapping of single nucleosomes and linkers in vivo

scientific article published on 9 February 2018

Recognition of platinum-DNA adducts by HMGB1a

scientific article published on 14 September 2012

Redundant Functions for Nap1 and Chz1 in H2A.Z Deposition

scientific article published on 7 September 2017

Replicating Nucleosomes

scientific article published on August 2015

Role of PIP2-Dependent Membrane Interactions in Vinculin Activation, Motility and Force Transmission

article

Ryanodine Receptor Pore Structure and Function

Slow Down to Catch Up

scientific article published on 01 August 2019

Solution structure of the DNA damage lesion 8-oxoguanosine from ultraviolet resonance Raman spectroscopy

scientific article published on 3 February 2009

Statistical analysis of SHAPE-directed RNA secondary structure modeling

scientific article published on 14 January 2013

Structural basis for the sequence-dependent effects of platinum-DNA adducts

scientific article published on 02 March 2009

Structural determinants of skeletal muscle ryanodine receptor gating

scientific article published on 14 January 2013

The CAF-1 complex couples Hippo pathway target gene expression and DNA replication

scientific article published on 25 September 2019

The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo

scientific article published on 15 April 2014

Thermodynamic Stability of Histone H3 is a Necessary but not Sufficient Driving Force for its Evolutionary Conservation

Thermodynamic stability of histone H3 is a necessary but not sufficient driving force for its evolutionary conservation

scientific article

Thermodynamics of calmodulin binding to cardiac and skeletal muscle ryanodine receptor ion channels

scientific article published on January 2009

Transcription and Remodeling Produce Asymmetrically Unwrapped Nucleosomal Intermediates.

scientific article published on 6 December 2017

Transcription of Nearly All Yeast RNA Polymerase II-Transcribed Genes Is Dependent on Transcription Factor TFIID.

scientific article published on 13 September 2017

Transcriptional Regulators Compete with Nucleosomes Post-replication

scientific article published on 6 April 2016

Paulina is supported by:

About Paulina

Help