List of works - Trevor Clancy

Artificial intelligence predicts the immunogenic landscape of SARS-CoV-2: toward universal blueprints for vaccine designs

scientific article published on 22 April 2020

Bioinformatics approaches to profile the tumor microenvironment for immunotherapeutic discovery

scientific article published on 10 July 2017

CLC and IFNAR1 are differentially expressed and a global immunity score is distinct between early- and late-onset colorectal cancer

article

Characterization of the Small Intestinal Lesion in Celiac Disease by Label-Free Quantitative Mass Spectrometry

scientific article published on 22 April 2018

Combining network modeling and gene expression microarray analysis to explore the dynamics of Th1 and Th2 cell regulation

scientific article

Connectivity can be used to identify key genes in DNA microarray data: a study based on gene expression in nasal polyps before and after treatment with glucocorticoids.

scientific article

Differential protein network analysis of the immune cell lineage

scientific article published on 21 September 2014

From proteomes to complexomes in the era of systems biology

scientific article published on January 2014

Identifying pathogenic processes by integrating microarray data with prior knowledge

scientific article

Immunological network signatures of cancer progression and survival

scientific article

Improved HLA typing of Class I and Class II alleles from next-generation sequencing data

scientific article published on 08 October 2019

Increased miR-21 expression during human monocyte differentiation into DCs

scientific article published on 01 June 2010

Melanoma brain colonization involves the emergence of a brain-adaptive phenotype

scientific article

Membranous expression of ectodomain isoforms of the epidermal growth factor receptor predicts outcome after chemoradiotherapy of lymph node-negative cervical cancer.

scientific article

Molecular profiling of tumor-specific TH1 cells activated in vivo.

scientific article published on May 2013

Naive Donor NK Cell Repertoires Associated with Less Leukemia Relapse after Allogeneic Hematopoietic Stem Cell Transplantation.

scientific article published on 8 January 2016

NeoMutate: an ensemble machine learning framework for the prediction of somatic mutations in cancer

scientific article published on 16 May 2019

Predicting physical interactions between protein complexes

scientific article published on 25 February 2013

Profiling networks of distinct immune-cells in tumors

scientific article

Regulators of cyclin-dependent kinases are crucial for maintaining genome integrity in S phase.

scientific article

Remodeling of secretory lysosomes during education tunes functional potential in NK cells

scientific article published in Nature Communications

The Genomic HyperBrowser: an analysis web server for genome-scale data

scientific article

The Genomic HyperBrowser: inferential genomics at the sequence level

scientific article

The T Cell Epitope Landscape of SARS-CoV-2 Variants of Concern

scientific article published on 15 July 2022

The differential disease regulome

scientific article

List of works by Trevor Clancy

Artificial intelligence predicts the immunogenic landscape of SARS-CoV-2: toward universal blueprints for vaccine designs

Bioinformatics approaches to profile the tumor microenvironment for immunotherapeutic discovery

CLC and IFNAR1 are differentially expressed and a global immunity score is distinct between early- and late-onset colorectal cancer

Characterization of the Small Intestinal Lesion in Celiac Disease by Label-Free Quantitative Mass Spectrometry

Combining network modeling and gene expression microarray analysis to explore the dynamics of Th1 and Th2 cell regulation

Connectivity can be used to identify key genes in DNA microarray data: a study based on gene expression in nasal polyps before and after treatment with glucocorticoids.

Differential protein network analysis of the immune cell lineage

From proteomes to complexomes in the era of systems biology

Identifying pathogenic processes by integrating microarray data with prior knowledge

Immunological network signatures of cancer progression and survival

Improved HLA typing of Class I and Class II alleles from next-generation sequencing data

Increased miR-21 expression during human monocyte differentiation into DCs

Melanoma brain colonization involves the emergence of a brain-adaptive phenotype

Membranous expression of ectodomain isoforms of the epidermal growth factor receptor predicts outcome after chemoradiotherapy of lymph node-negative cervical cancer.

Molecular profiling of tumor-specific TH1 cells activated in vivo.

Naive Donor NK Cell Repertoires Associated with Less Leukemia Relapse after Allogeneic Hematopoietic Stem Cell Transplantation.

NeoMutate: an ensemble machine learning framework for the prediction of somatic mutations in cancer

Predicting physical interactions between protein complexes

Profiling networks of distinct immune-cells in tumors

Regulators of cyclin-dependent kinases are crucial for maintaining genome integrity in S phase.

Remodeling of secretory lysosomes during education tunes functional potential in NK cells

The Genomic HyperBrowser: an analysis web server for genome-scale data

The Genomic HyperBrowser: inferential genomics at the sequence level

The T Cell Epitope Landscape of SARS-CoV-2 Variants of Concern

The differential disease regulome