List of works - Emidio Capriotti

A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues

scientific article published in February 2004

A minimal model of three-state folding dynamics of helical proteins

scientific article published in March 2005

A neural-network-based method for predicting protein stability changes upon single point mutations.

scientific article

A new disease-specific machine learning approach for the prediction of cancer-causing missense variants

scientific article published on 7 July 2011

A three-state prediction of single point mutations on protein stability changes.

scientific article

All-atom knowledge-based potential for RNA structure prediction and assessment

scientific article

Are machine learning based methods suited to address complex biological problems? Lessons from CAGI-5 challenges

scientific article published on 18 June 2019

Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants

scientific article published on 03 September 2019

Assessing predictions on fitness effects of missense variants in calmodulin

scientific article published on 03 September 2019

Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer

scientific article published on 17 August 2019

Bioinformatics and variability in drug response: a protein structural perspective

scientific article

Bioinformatics challenges for personalized medicine

scientific article

Bioinformatics for personal genome interpretation

scientific article (publication date: July 2012)

Blind prediction of deleterious amino acid variations with SNPs&GO.

scientific article published on 19 January 2017

Characterization of human frataxin missense variants in cancer tissues

scientific article published on 18 June 2019

Collective judgment predicts disease-associated single nucleotide variants

scientific article

Comparative modeling: the state of the art and protein drug target structure prediction

scientific article

Computational and theoretical methods for protein folding

scientific article

Computational methods and resources for the interpretation of genomic variants in cancer

scientific article published on 18 June 2015

ContrastRank: a new method for ranking putative cancer driver genes and classification of tumor samples

scientific article published on September 2014

DDGun: an untrained method for the prediction of protein stability changes upon single and multiple point variations

scientific article published on 03 July 2019

Diffusion-collision of foldons elucidates the kinetic effects of point mutations and suggests control strategies of the folding process of helical proteins

scholarly article by Emidio Capriotti published in July 2006

Dynamics of the minimally frustrated helices determine the hierarchical folding of small helical proteins

scientific article published on 12 May 2004

Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge

scientific article published on 12 July 2019

Fido-SNP: the first webserver for scoring the impact of single nucleotide variants in the dog genome

scientific article published on 01 July 2019

Functional annotations improve the predictive score of human disease-related mutations in proteins

scientific article

Hierarchical mechanochemical switches in angiostatin

scientific article

I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure

scientific article

Improving the prediction of disease-related variants using protein three-dimensional structure

scientific article

In silico comparative characterization of pharmacogenomic missense variants

scientific article

Integrating molecular networks with genetic variant interpretation for precision medicine

scientific article published on 12 December 2018

K-Fold: a tool for the prediction of the protein folding kinetic order and rate

scientific article published on 30 November 2006

Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5

scientific article published on 17 August 2019

Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI.

scientific article

PhD-SNPg: a webserver and lightweight tool for scoring single nucleotide variants

scientific article published on 8 May 2017

Phased whole-genome genetic risk in a family quartet using a major allele reference sequence

scientific article

Predicting protein stability changes from sequences using support vector machines

scientific article published in September 2005

Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges

scientific article published on 24 June 2019

Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.

scientific article

RNA structure alignment by a unit-vector approach

scientific article

SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments

scientific article

SARA: a server for function annotation of RNA structures

scientific article published on 29 May 2009

SNP-SIG Meeting 2011: identification and annotation of SNPs in the context of structure, function, and disease

scientific article

The WWWH of remote homolog detection: the state of the art.

scientific article

The pros and cons of predicting protein contact maps.

scientific article

The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules

scientific article

Thoughts from SNP-SIG 2012: future challenges in the annotation of genetic variations

scientific article

Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans

scientific article published in January 2008

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package

scientific article published on 28 February 2013

VarI-COSI 2018: a forum for research advances in variant interpretation and diagnostics

scientific article published on 16 July 2019

VarI-SIG 2014--From SNPs to variants: interpreting different types of genetic variants

scientific article published on 18 June 2015

VarI-SIG 2015: methods for personalized medicine - the role of variant interpretation in research and diagnostics

scientific article

VpreB serves as an invariant surrogate antigen for selecting immunoglobulin antigen-binding sites

scientific article published on July 2016

WALTZ-DB: a benchmark database of amyloidogenic hexapeptides

scientific article

WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation

scientific article

WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures

scientific article

List of works by Emidio Capriotti

A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues

A minimal model of three-state folding dynamics of helical proteins

A neural-network-based method for predicting protein stability changes upon single point mutations.

A new disease-specific machine learning approach for the prediction of cancer-causing missense variants

A three-state prediction of single point mutations on protein stability changes.

All-atom knowledge-based potential for RNA structure prediction and assessment

Are machine learning based methods suited to address complex biological problems? Lessons from CAGI-5 challenges

Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants

Assessing predictions on fitness effects of missense variants in calmodulin

Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer

Bioinformatics and variability in drug response: a protein structural perspective

Bioinformatics challenges for personalized medicine

Bioinformatics for personal genome interpretation

Blind prediction of deleterious amino acid variations with SNPs&GO.

Characterization of human frataxin missense variants in cancer tissues

Collective judgment predicts disease-associated single nucleotide variants

Comparative modeling: the state of the art and protein drug target structure prediction

Computational and theoretical methods for protein folding

Computational methods and resources for the interpretation of genomic variants in cancer

ContrastRank: a new method for ranking putative cancer driver genes and classification of tumor samples

DDGun: an untrained method for the prediction of protein stability changes upon single and multiple point variations

Diffusion-collision of foldons elucidates the kinetic effects of point mutations and suggests control strategies of the folding process of helical proteins

Dynamics of the minimally frustrated helices determine the hierarchical folding of small helical proteins

Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge

Fido-SNP: the first webserver for scoring the impact of single nucleotide variants in the dog genome

Functional annotations improve the predictive score of human disease-related mutations in proteins

Hierarchical mechanochemical switches in angiostatin

I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure

Improving the prediction of disease-related variants using protein three-dimensional structure

In silico comparative characterization of pharmacogenomic missense variants

Integrating molecular networks with genetic variant interpretation for precision medicine

K-Fold: a tool for the prediction of the protein folding kinetic order and rate

Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5

Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI.

PhD-SNPg: a webserver and lightweight tool for scoring single nucleotide variants

Phased whole-genome genetic risk in a family quartet using a major allele reference sequence

Predicting protein stability changes from sequences using support vector machines

Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges

Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.

RNA structure alignment by a unit-vector approach

SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments

SARA: a server for function annotation of RNA structures

SNP-SIG Meeting 2011: identification and annotation of SNPs in the context of structure, function, and disease

The WWWH of remote homolog detection: the state of the art.

The pros and cons of predicting protein contact maps.

The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules

Thoughts from SNP-SIG 2012: future challenges in the annotation of genetic variations

Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package

VarI-COSI 2018: a forum for research advances in variant interpretation and diagnostics

VarI-SIG 2014--From SNPs to variants: interpreting different types of genetic variants

VarI-SIG 2015: methods for personalized medicine - the role of variant interpretation in research and diagnostics

VpreB serves as an invariant surrogate antigen for selecting immunoglobulin antigen-binding sites

WALTZ-DB: a benchmark database of amyloidogenic hexapeptides

WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation

WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures