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List of works by Jana Seifert

Anaerobic Microbial Degradation of Hydrocarbons: From Enzymatic Reactions to the Environment

scientific article

Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers

scientific article published on 13 January 2015

Analysis of structure, function, and activity of a benzene-degrading microbial community

scientific article published on 11 March 2013

Analysis of the Bacterial and Host Proteins along and across the Porcine Gastrointestinal Tract

scientific article published on 10 January 2019

Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies

scientific article published on 20 May 2011

Bacteria dominate the short-term assimilation of plant-derived N in soil

article

Bacterial Communities in Bangladesh Aquifers Differing in Aqueous Arsenic Concentration

Bacterial diversity in a mine water treatment plant

scientific article

Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities

scientific article

Calculation of partial isotope incorporation into peptides measured by mass spectrometry

scientific article

Catching the tip of the iceberg - evaluation of sample preparation protocols for metaproteomic studies of the rumen microbiota

scientific article published on 13 March 2015

Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments

scientific article published in June 2009

Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM).

scientific article published on 13 November 2013

Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data

scientific article

Correction: Spatial Variation of the Gut Microbiota in Broiler Chickens as Affected by Dietary Available Phosphorus and Assessed by T-RFLP Analysis and 454 Pyrosequencing

scientific article published on 17 December 2015

Crystal structure of the hydroxyquinol 1,2-dioxygenase from Nocardioides simplex 3E, a key enzyme involved in polychlorinated aromatics biodegradation

scientific article

Cyclohexanecarboxyl-coenzyme A (CoA) and cyclohex-1-ene-1-carboxyl-CoA dehydrogenases, two enzymes involved in the fermentation of benzoate and crotonate in Syntrophus aciditrophicus

scientific article published on 10 May 2013

Decimal place slope, a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species

scientific article

Dehalococcoides mccartyi strain DCMB5 Respires a broad spectrum of chlorinated aromatic compounds

scientific article published on 7 November 2014

Dietary changes in nutritional studies shape the structural and functional composition of the pigs' fecal microbiome-from days to weeks.

scientific article published on 27 October 2017

Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps

scientific article

Editorial for Special Issue: Metaproteomics

scientific article published on 05 March 2019

Effect of Bacillus subtilis and Bacillus licheniformis supplementation in diets with low- and high-protein content on ileal crude protein and amino acid digestibility and intestinal microbiota composition of growing pigs

scientific article

Effect of donor animal species and their feeding on the composition of the microbial community establishing in a rumen simulation

scientific article published on 19 May 2015

Effects of a Dietary L-Carnitine Supplementation on Performance, Energy Metabolism and Recovery from Calving in Dairy Cows

scientific article published on 21 February 2020

Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach

scientific article

Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP).

scientific article

Enhancing metaproteomics--The value of models and defined environmental microbial systems

scientific article published in December 2015

Enzymes involved in the anaerobic degradation of meta-substituted halobenzoates

scientific article published on 01 November 2011

Evaluation of DNA extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions

scientific article published on 5 November 2015

Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP).

scientific article

Functional analysis of an anaerobic m-xylene-degrading enrichment culture using protein-based stable isotope probing

scientific article

Functional characterization of reductive dehalogenases by using blue native polyacrylamide gel electrophoresis

scientific article published on 30 November 2012

Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity

scientific article

Growth of Dehalococcoides mccartyi strain CBDB1 by reductive dehalogenation of brominated benzenes to benzene

scientific article published on 3 August 2012

Gut Bacteria Metabolism Impacts Immune Recovery in HIV-infected Individuals

scientific article

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

HIV infection results in metabolic alterations in the gut microbiota different from those induced by other diseases

scientific article

Identification and characterization of 2-naphthoyl-coenzyme A reductase, the prototype of a novel class of dearomatizing reductases

scientific article published on 7 May 2013

Identification and characterization of a re-citrate synthase in Dehalococcoides strain CBDB1

scientific article

Identification and characterization of a succinyl-coenzyme A (CoA):benzoate CoA transferase in Geobacter metallireducens

scientific article published on 9 March 2012

Impact of vitamin B12 on formation of the tetrachloroethene reductive dehalogenase in Desulfitobacterium hafniense strain Y51.

scientific article

Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology

scientific article

Intestinal Microbiota and Microbial Metabolites Are Changed in a Pig Model Fed a High-Fat/Low-Fiber or a Low-Fat/High-Fiber Diet

scientific article

Isolation of Novel Iron-Oxidizing Bacteria from an Acid Mine Water Treatment Plant

article

Limitations in detection of 15N incorporation by mass spectrometry in protein-based stable isotope probing (protein-SIP).

scientific article published on 17 March 2013

Membrane vesicle formation as a multiple-stress response mechanism enhances Pseudomonas putida DOT-T1E cell surface hydrophobicity and biofilm formation.

scientific article published on 29 June 2012

MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics

scientific article published on December 2014

Metabolic in Vivo Labeling Highlights Differences of Metabolically Active Microbes from the Mucosal Gastrointestinal Microbiome between High-Fat and Normal Chow Diet

scientific article

Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria

scientific article

Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation.

scientific article

Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localization resolved species distribution and enzymatic functionalities.

scientific article

Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation

scientific article published on 23 July 2015

Microbial interactions during residual oil and n-fatty acid metabolism by a methanogenic consortium

scientific article published on 7 March 2012

Microbial minorities modulate methane consumption through niche partitioning

scientific article

Microbiome Clusters Disclose Physiologic Variances in Dairy Cows Challenged by Calving and Lipopolysaccharides

scientific article published on 19 October 2021

Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure

article by Manuel Ferrer et al published January 2013 in Environmental Microbiology

New clusters of arsenite oxidase and unusual bacterial groups in enrichments from arsenic-contaminated soil

scientific article published on 21 February 2012

News in livestock research - use of Omics-technologies to study the microbiota in the gastrointestinal tract of farm animals

scientific article

Novel taxonomic and functional diversity of eight bacteria from the upper digestive tract of chicken

scientific article published in 2024

Occurrence and Function of the Na+-Translocating NADH:Quinone Oxidoreductase in Prevotella spp.

scientific article published on 27 April 2019

Organic cofactors in the metabolism of Dehalococcoides mccartyi strains

scientific article (publication date: 19 April 2013)

Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community

scientific article

Physiological, Genomic, and Proteomic Characterization of New “ Ferrovum ” Strains Obtained from a Pilot Plant for Mine-Water Treatment

article

Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources

scientific article published on 14 April 2014

Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part II. Mimicking environmental conditions during cultivation in retentostats

scientific article published on 13 April 2014

Phytate Degradation, Transcellular Mineral Transporters, and Mineral Utilization by Two Strains of Laying Hens as Affected by Dietary Phosphorus and Calcium

scientific article published on 24 September 2020

Phytate degradation, intestinal microbiota, microbial metabolites and immune values are changed in growing pigs fed diets with varying calcium-phosphorus concentration and fermentable substrates

scientific article published on 01 April 2019

Population dynamics of iron-oxidizing communities in pilot plants for the treatment of acid mine waters

scientific article published in August 2009

Predominance ofMethanolobusspp. andMethanoculleusspp. in the Archaeal Communities of Saline Gas Field Formation Fluids

Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium

scientific article

Protein-based stable isotope probing

scientific article published on 18 November 2010

Protein-based stable isotope probing (protein-SIP) in functional metaproteomics

scientific article published on 15 March 2012

Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor

scientific article

Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor

scientific article

Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates

scientific article published on 21 September 2015

Pseudechis australis venomics: adaptation for a defense against microbial pathogens and recruitment of body transferrin

scientific article

Pulsed (13)C2-Acetate Protein-SIP Unveils Epsilonproteobacteria as Dominant Acetate Utilizers in a Sulfate-Reducing Microbial Community Mineralizing Benzene

scientific article published on 4 February 2016

Schwertmannite formation adjacent to bacterial cells in a mine water treatment plant and in pure cultures of Ferrovum myxofaciens

scientific article

Short-Chain Fatty Acids Modulate Metabolic Pathways and Membrane Lipids in Prevotella bryantii B14

scientific article published on 16 October 2020

Snake venomic of Crotalus durissus terrificus--correlation with pharmacological activities

scientific article published in May 2010

Spatial Variation of the Gut Microbiota in Broiler Chickens as Affected by Dietary Available Phosphorus and Assessed by T-RFLP Analysis and 454 Pyrosequencing

scientific article published on 20 November 2015

Stable Isotope Probing Approaches to Study Anaerobic Hydrocarbon Degradation and Degraders

scientific article

Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1.

scientific article published on June 2012

Subpopulation-proteomics in prokaryotic populations

scientific article

Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440.

scientific article published on 29 August 2014

Sulfur-34S stable isotope labeling of amino acids for quantification (SULAQ34) of proteomic changes in Pseudomonas fluorescens during naphthalene degradation

scientific article published on 19 April 2013

Sulfur-36S stable isotope labeling of amino acids for quantification (SULAQ)

scientific article published on 16 December 2011

The nitrogen cycle in anaerobic methanotrophic mats of the Black Sea is linked to sulfate reduction and biomass decomposition

scientific article published in July 2013

The venomics of Bothrops alternatus is a pool of acidic proteins with predominant hemorrhagic and coagulopathic activities

scientific article published in May 2010

Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments

scientific article published on 20 May 2011

Variations of Phosphorous Accessibility Causing Changes in Microbiome Functions in the Gastrointestinal Tract of Chickens

scientific article