List of works by Christoph W. Sensen

4D bioinformatics: a new look at the ribosome as an example

scientific article published in April 2003

A comparative, BAC end sequence enabled map of the genome of the American mink (Neovison vison)

A novel group of multi-GAP-domain proteins

scientific article published on October 2008

Addressing proteolytic efficiency in enzymatic degradation therapy for celiac disease

scientific article published on 02 August 2016

Age-dependent change in the 3D structure of cortical porosity at the human femoral midshaft

scientific article published on 12 January 2007

An efficient virtual dissection tool to create generic models for anatomical atlases

article

Automated low-redundancy large-scale DNA sequencing by primer walking

scientific article published on 01 October 1993

BRENDA in 2015: exciting developments in its 25th year of existence

scientific article

Benzene and Naphthalene Degrading Bacterial Communities in an Oil Sands Tailings Pond

scientific article published on 28 September 2017

Bioinformatics visualization and integration with open standards: the Bluejay genomic browser.

scientific article

Bioinformatics: Genomic Data Representation through Images— MAGPIE as an Example

Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking

scientific article

Bluejay: A Highly Scalable and Integrative Visual Environment for Genome Exploration

Building generic anatomical models using virtual model cutting and iterative registration

scientific article

CAVEman, An Object-Oriented Model of the Human Body

CAVEman: Standardized anatomical context for biomedical data mapping

scientific article published in January 2008

Carbon and sulfur cycling by microbial communities in a gypsum-treated oil sands tailings pond

scientific article published on 3 December 2010

Carnivorous Nutrition in Pitcher Plants (Nepenthes spp.) via an Unusual Complement of Endogenous Enzymes

scientific article

Cellular Immune Response Involving Multinucleated Giant Hemocytes with Two-Step Genome Amplification in the Drosophilid Zaprionus indianus

scientific article published on 25 September 2019

Characterization of two novel alcohol short-chain dehydrogenases/reductases from Ralstonia eutropha H16 capable of stereoselective conversion of bulky substrates

scientific article published on 23 January 2016

Comparative analysis of metagenomes from three methanogenic hydrocarbon-degrading enrichment cultures with 41 environmental samples

scientific article

Complete DNA sequence of yeast chromosome XI.

scientific article published in June 1994

Complete genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259.

scientific article

Complete nucleotide sequence of the Sulfolobus islandicus multicopy plasmid pRN1.

scientific article published on March 1996

Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199.

scientific article

Completing the sequence of the Sulfolobus solfataricus P2 genome

scientific article published in August 1998

Compositions of microbial communities associated with oil and water in a mesothermic oil field

scientific article

Contribution of make-up water to the microbial community in an oilfield from which oil is produced by produced water re-injection

Creating Bioinformatics Semantic Web Services from Existing Web Services: A Real-World Application of SAWSDL

Creating hierarchical models of protein families based on Expressed Sequence Tags: the "Sprockets" analysis pipeline

scientific article published on 28 February 2006

Disease-specific motifs can be identified in circulating nucleic acids from live elk and cattle infected with transmissible spongiform encephalopathies

scientific article published on 05 December 2008

Diversity of rumen bacteria in canadian cervids

scientific article

Draft Genome Sequence of a 94-Year-Old Listeria monocytogenes Isolate, SLCC208.

scientific article published on 21 January 2016

Editorial Special Issue on the Occasion of Prof. Dr. Alf Pühler's 75th birthday

scientific article published in September 2017

Effect of sodium bisulfite injection on the microbial community composition in a brackish-water-transporting pipeline

scientific article

Effect of voxel size on 3D micro-CT analysis of cortical bone porosity

scientific article published on 5 March 2007

Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays

scientific article

Enterobacteriaceae dominate the core microbiome and contribute to the resistome of arugula (Eruca sativa Mill.)

scientific article published on 29 January 2019

Estimating cell count and distribution in labeled histological samples using incremental cell search

scientific article published on 24 May 2011

Ethical, Legal and Social Issues: Genomics— Five Years from Now

Evolutionary analysis of the hisCGABdFDEHI gene cluster from the archaeon Sulfolobus solfataricus P2

scientific article published on July 1997

Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics

scientific article

Expressed sequence tags from Madagascar periwinkle (Catharanthus roseus).

scientific article

Fast interactive integration of cross-sectional image datasets and surface data for morphometric analysis.

scientific article

First insight into the genome of an uncultivated crenarchaeote from soil

scientific article

Four distinct types of E.C. 1.2.1.30 enzymes can catalyze the reduction of carboxylic acids to aldehydes

scientific article published on 18 February 2017

Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture

scientific article

Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2.

scientific article published in February 2000

Gene expression by the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough grown on an iron electrode under cathodic protection conditions

scientific article published on 29 February 2008

Gene transcript and metabolite profiling of elicitor-induced opium poppy cell cultures reveals the coordinate regulation of primary and secondary metabolism

scientific article

Generation of connectivity-preserving surface models of multiple sclerosis lesions.

scientific article published in January 2011

Genome Annotation

article

Genome Data Representation Through Images: The MAGPIE/Bluejay System

Genome research and bioinformatics with relevance to biotechnology

scientific article published on 01 January 2014

Genomic Data Representation through Images-Magpie as an Example

Genomic Data Representation through Images-Magpie as an Example

Genomic Data Visualization: The Bluejay System

scholarly article

Genomic compartmentalization of gene families encoding core components of metazoan signaling systems

scientific article

Genomics-Five Years from Now

Genomics-Five Years from Now

Geometric Morphometrics and the Study of Development

article

Glucose transport in the extremely thermoacidophilic Sulfolobus solfataricus involves a high-affinity membrane-integrated binding protein

scientific article

Helping Biologists Effectively Build Workflows, without Programming

Identification and molecular characterization of the first alpha -xylosidase from an archaeon.

scientific article

Instant Feedback Rapid Prototyping for GPU-Accelerated Computation, Manipulation, and Visualization of Multidimensional Data.

scientific article

Integrative visualization of temporally varying medical image patterns

scientific article

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

scientific article

Interspecies data mining to predict novel ING-protein interactions in human

scientific article

Introduction

Introduction

Jabiru: harnessing Java 3D behaviors for device and display portability

scientific article

LincRNA-p21 acts as a mediator of ING1b-induced apoptosis.

scientific article

MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region.

scientific article

MAGPIE: A Multipurpose Automated Genome Project Investigation Environment for Ongoing Sequencing Projects

MAGPIE: automated genome interpretation

scientific article

Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians

scientific article

Metabolomic response to exercise training in lean and diet-induced obese mice.

scientific article published on 26 January 2011

Metagenomic analysis of an anaerobic alkane-degrading microbial culture: potential hydrocarbon-activating pathways and inferred roles of community members

scientific article published on 30 May 2013

Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common

scientific article (publication date: 17 September 2013)

Methanogenic biodegradation of two-ringed polycyclic aromatic hydrocarbons

scholarly article by Carolina Berdugo-Clavijo et al published 8 March 2012 in FEMS Microbiology Ecology

Methanogenic toluene metabolism: community structure and intermediates

scientific article published on 01 November 2011

Methanotrophic bacteria in oilsands tailings ponds of northern Alberta

scientific article published on 20 December 2012

Micro-computed tomography-based phenotypic approaches in embryology: procedural artifacts on assessments of embryonic craniofacial growth and development

scientific article

Microbial community and potential functional gene diversity involved in anaerobic hydrocarbon degradation and methanogenesis in an oil sands tailings pond.

scientific article published on 29 July 2013

Microbial community succession in a bioreactor modeling a souring low-temperature oil reservoir subjected to nitrate injection

scientific article

Molecular Phylogeny of Algal Plastids: A Brief Review of Host/Endosymbiont Genome Development Based on Sequence Comparisons

article

Molecular analysis of pDL10 from Acidianus ambivalens reveals a family of related plasmids from extremely thermophilic and acidophilic archaea.

scientific article

Molecular and phylogenetic approaches for assessing sources of Cryptosporidium contamination in water

scientific article published on 10 July 2012

Mutations in the ABC 1 gene in familial HDL deficiency with defective cholesterol efflux

scientific article published in The Lancet

Nucleotide sequence and analysis of the centromeric region of yeast chromosome IX.

scientific article published on January 1995

Oil sands tailings ponds harbour a small core prokaryotic microbiome and diverse accessory communities.

scientific article

On the way to building an integrated computational environment for the study of developmental patterns and genetic diseases

scientific article published on January 2006

Organizational characteristics and information content of an archaeal genome: 156 kb of sequence from Sulfolobus solfataricus P2.

scientific article published on October 1996

Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays.

scientific article published on 29 September 2004

Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface

scientific article

Phylogenetic analysis of the ING family of PHD finger proteins

scientific article

Phylogenetic analysis of the MS4A and TMEM176 gene families

scientific article

Plasticity of a holobiont: desiccation induces fasting-like metabolism within the lichen microbiota

scientific article published on 11 October 2018

Prepublication data sharing

scientific article

Programming-by-Example Meets the Semantic Web: Using Ontologies and Web Services to Close the Semantic Gap

Rapid access to genes of biotechnologically useful enzymes by partial genome sequencing: the thermoalkaliphile Anaerobranca gottschalkii

scientific article published on 29 October 2008

Reconstructing the mosaic glycolytic pathway of the anaerobic eukaryote Monocercomonoides

scientific article

Reconstruction of the central carbohydrate metabolism of Thermoproteus tenax by use of genomic and biochemical data

scientific article

Response of the hyperthermophilic archaeon Sulfolobus solfataricus to UV damage

scientific article published on 28 September 2007

Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L.

scientific article

Roles of Thermophiles and Fungi in Bitumen Degradation in Mostly Cold Oil Sands Outcrops

scientific article published on 24 July 2015

Seahawk: moving beyond HTML in Web-based bioinformatics analysis

scientific article

Semantic Web Service provision: a realistic framework for Bioinformatics programmers.

scientific article published on 24 March 2007

Separation of up to 1000 bases on a modified A.L.F. DNA sequencer.

scientific article published on December 1993

Sequencing Microbial Genomes

Sequencing and analysis of 51.6 kilobases on the left arm of chromosome XI from Saccharomyces cerevisiae reveals 23 open reading frames including the FAS1 gene

scientific article published on December 1993

SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models

scientific article

Spatiotemporal integration of molecular and anatomical data in virtual reality using semantic mapping

scientific article

Special Issue on acib, dedicated to the occasion of Prof. Dr. Helmut Schwab's 65th birthday

scientific article published on 14 July 2016

Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae

scientific article

Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry

scientific article published on November 1998

Synthetic biosystems for the production of high-value plant metabolites.

scientific article published on 29 December 2011

The Bluejay genome browser.

scientific article

The Future of Large-Scale Life Science Research

The Sulfolobus solfataricus P2 genome project.

scientific article published on June 1996

The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

scientific article

The origin of land plants: phylogenetic relationships among charophytes, bryophytes, and vascular plants inferred from complete small-subunit ribosomal RNA gene sequences

scientific article

The phylogenetic position of the pelobiont Mastigamoeba balamuthi based on sequences of rDNA and translation elongation factors EF-1alpha and EF-2.

scientific article

The production of clonal and axenic cultures of microalgae using fluorescence-activated cell sorting

article

Tracking host sources of Cryptosporidium spp. in raw water for improved health risk assessment

scientific article

Transcription profiling of Candida albicans cells undergoing the yeast-to-hyphal transition

scientific article

Transcriptome analysis based on next-generation sequencing of non-model plants producing specialized metabolites of biotechnological interest

scientific article published on 16 April 2013

Transcriptome analysis of 20 taxonomically related benzylisoquinoline alkaloid-producing plants

scientific article published on 18 September 2015

Transcriptome analysis of Thapsia laciniata Rouy provides insights into terpenoid biosynthesis and diversity in Apiaceae

scientific article

Transcriptome profiling of khat (Catha edulis) and Ephedra sinica reveals gene candidates potentially involved in amphetamine-type alkaloid biosynthesis

scientific article

Two DNA polymerase sliding clamps from the thermophilic archaeon Sulfolobus solfataricus

scientific article published in August 1999

Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus

scientific article published in June 2000

Unconventional microarray design reveals the response to obesity is largely tissue specific: analysis of common and divergent responses to diet-induced obesity in insulin-sensitive tissues

article

Using CAVE technology for functional genomics studies

scientific article published in January 2002

Using a Novel Data Transformation Technique to Provide the EMBOSS Software Suite as Semantic Web Services

Virtual Reality Meets Functional Genomics

Visual comparison of multiple gene expression datasets in a genomic context

scientific article published on 25 August 2008

Visualization of biological shape transformation by 3D model morphing

scholarly article published 2010

Whole genome sequence-based serogrouping of Listeria monocytogenes isolates.

scientific article published on 8 June 2016

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