List of works - Takashi Nagata

(1)H, (13)C, and (15)N resonance assignments of the dsRBDs of mouse RNA helicase A.

scientific article

Accurate and molecular-size-tolerant NMR quantitation of diverse components in solution

scientific article published on 17 February 2016

Anti-prion activity of an RNA aptamer and its structural basis

scientific article

Backbone and side chain assignments of the second RNA-binding domain of Musashi-1 in its free form and in complex with 5-mer RNA.

scientific article published on 14 August 2017

Boosting of activity enhancement of K(+)-responsive quadruplex hammerhead ribozyme

scientific article

Boosting sugarcane trash decomposition: synergistic action and proximity effect of xylanase and feruloyl esterase co-displayed on the cell surface of <i>Pichia pastoris</i> (<i>Komagataella phaffi</i>)

scientific article published in 2024

Catalytic analysis of APOBEC3G involving real-time NMR spectroscopy reveals nucleic acid determinants for deamination

scientific article published on 13 April 2015

Characterisation of an aptamer against the Runt domain of AML1 (RUNX1) by NMR and mutational analyses

scientific article published on 2 January 2018

Characterization of the Deamination Coupled with Sliding along DNA of Anti-HIV Factor APOBEC3G on the Basis of the pH-Dependence of Deamination Revealed by Real-Time NMR Monitoring.

scientific article

Conjugation of two RNA aptamers improves binding affinity to AML1 Runt domain

scientific article published on 14 July 2017

Development of an RNA aptamer that acquires binding capacity against HIV-1 Tat protein via G-quadruplex formation in response to potassium ions

scientific article published on 16 June 2017

Direct visualization of the conformational change of FUS/TLS upon binding to promoter-associated non-coding RNA

scientific article published on 09 July 2020

Functional mutagenesis of AML1/RUNX1 and PEBP2 beta/CBF beta define distinct, non-overlapping sites for DNA recognition and heterodimerization by the Runt domain

scientific article published on 01 April 2001

High yield production of fungal manganese peroxidases by E. coli through soluble expression, and examination of the activities

scientific article published on 2 January 2018

Immunoglobulin motif DNA recognition and heterodimerization of the PEBP2/CBF Runt domain

scientific article

Influence of the DNA sequence/length and pH on deaminase activity, as well as the roles of the amino acid residues around the catalytic center of APOBEC3F.

scientific article published on 21 August 2017

K(+)-Responsive off-to-on switching of hammerhead ribozyme through dual G-quadruplex formation requiring no heating and cooling treatment.

scientific article published on 4 November 2015

Mechanism of protein-RNA recognition: analysis based on the statistical mechanics of hydration.

scientific article published on 21 March 2018

Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5.

scientific article published on March 2017

N- and C-terminal fragments of a globular protein constructed by elongation of modules as a units associated for functional complementation

scientific article

NMR study of xenotropic murine leukemia virus-related virus protease in a complex with amprenavir.

scientific article published on 25 July 2012

Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3

scientific article

Nucleus Accumbens-Associated Protein 1 Binds DNA Directly through the BEN Domain in a Sequence-Specific Manner

scientific article published on 14 December 2020

Observation by Real-Time NMR and Interpretation of Length- and Location-Dependent Deamination Activity of APOBEC3B.

scientific article published on 27 September 2017

Proton conduction in hydronium solvate ionic liquids affected by ligand shape

scientific article published on 15 December 2020

Quantitative analysis of location- and sequence-dependent deamination by APOBEC3G using real-time NMR spectroscopy

scientific article published on 29 January 2014

Solution structures of the double-stranded RNA-binding domains from RNA helicase A

scientific article

Structural basis for inhibition of the MDM2:p53 interaction by an optimized MDM2-binding peptide selected with mRNA display

scientific article

Structural properties and RNA-binding activities of two RNA recognition motifs of a mouse neural RNA-binding protein, mouse-Musashi-1

scientific article published on 01 February 1997

Structure and interactions with RNA of the N-terminal UUAG-specific RNA-binding domain of hnRNP D0

scientific article

Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions

scientific article

Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA

scientific article

Structure, Dynamics, and Interaction of p54(nrb)/NonO RRM1 with 5' Splice Site RNA Sequence

scientific article

Structure, backbone dynamics and interactions with RNA of the C-terminal RNA-binding domain of a mouse neural RNA-binding protein, Musashi1

scientific article

Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G

scientific article

Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein

scientific article published on January 2011

The C-terminal cytidine deaminase domain of APOBEC3G itself undergoes intersegmental transfer for a target search, as revealed by real-time NMR monitoring

scientific article published on 14 September 2017

The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition

scientific article

The binding specificity of Translocated in LipoSarcoma/FUsed in Sarcoma with lncRNA transcribed from the promoter region of cyclin D1.

scientific article published on 25 January 2016

The first successful observation of in-cell NMR signals of DNA and RNA in living human cells

scientific article

Uniform 13C/15N-Labeling of DNA by Tandem Repeat Amplification

scientific article published on 01 January 2001

List of works by Takashi Nagata

(1)H, (13)C, and (15)N resonance assignments of the dsRBDs of mouse RNA helicase A.

Accurate and molecular-size-tolerant NMR quantitation of diverse components in solution

Anti-prion activity of an RNA aptamer and its structural basis

Backbone and side chain assignments of the second RNA-binding domain of Musashi-1 in its free form and in complex with 5-mer RNA.

Boosting of activity enhancement of K(+)-responsive quadruplex hammerhead ribozyme

Boosting sugarcane trash decomposition: synergistic action and proximity effect of xylanase and feruloyl esterase co-displayed on the cell surface of <i>Pichia pastoris</i> (<i>Komagataella phaffi</i>)

Catalytic analysis of APOBEC3G involving real-time NMR spectroscopy reveals nucleic acid determinants for deamination

Characterisation of an aptamer against the Runt domain of AML1 (RUNX1) by NMR and mutational analyses

Characterization of the Deamination Coupled with Sliding along DNA of Anti-HIV Factor APOBEC3G on the Basis of the pH-Dependence of Deamination Revealed by Real-Time NMR Monitoring.

Conjugation of two RNA aptamers improves binding affinity to AML1 Runt domain

Development of an RNA aptamer that acquires binding capacity against HIV-1 Tat protein via G-quadruplex formation in response to potassium ions

Direct visualization of the conformational change of FUS/TLS upon binding to promoter-associated non-coding RNA

Functional mutagenesis of AML1/RUNX1 and PEBP2 beta/CBF beta define distinct, non-overlapping sites for DNA recognition and heterodimerization by the Runt domain

High yield production of fungal manganese peroxidases by E. coli through soluble expression, and examination of the activities

Immunoglobulin motif DNA recognition and heterodimerization of the PEBP2/CBF Runt domain

Influence of the DNA sequence/length and pH on deaminase activity, as well as the roles of the amino acid residues around the catalytic center of APOBEC3F.

K(+)-Responsive off-to-on switching of hammerhead ribozyme through dual G-quadruplex formation requiring no heating and cooling treatment.

Mechanism of protein-RNA recognition: analysis based on the statistical mechanics of hydration.

Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5.

N- and C-terminal fragments of a globular protein constructed by elongation of modules as a units associated for functional complementation

NMR study of xenotropic murine leukemia virus-related virus protease in a complex with amprenavir.

Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3

Nucleus Accumbens-Associated Protein 1 Binds DNA Directly through the BEN Domain in a Sequence-Specific Manner

Observation by Real-Time NMR and Interpretation of Length- and Location-Dependent Deamination Activity of APOBEC3B.

Proton conduction in hydronium solvate ionic liquids affected by ligand shape

Quantitative analysis of location- and sequence-dependent deamination by APOBEC3G using real-time NMR spectroscopy

Solution structures of the double-stranded RNA-binding domains from RNA helicase A

Structural basis for inhibition of the MDM2:p53 interaction by an optimized MDM2-binding peptide selected with mRNA display

Structural properties and RNA-binding activities of two RNA recognition motifs of a mouse neural RNA-binding protein, mouse-Musashi-1

Structure and interactions with RNA of the N-terminal UUAG-specific RNA-binding domain of hnRNP D0

Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions

Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA

Structure, Dynamics, and Interaction of p54(nrb)/NonO RRM1 with 5' Splice Site RNA Sequence

Structure, backbone dynamics and interactions with RNA of the C-terminal RNA-binding domain of a mouse neural RNA-binding protein, Musashi1

Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G

Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein

The C-terminal cytidine deaminase domain of APOBEC3G itself undergoes intersegmental transfer for a target search, as revealed by real-time NMR monitoring

The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition

The binding specificity of Translocated in LipoSarcoma/FUsed in Sarcoma with lncRNA transcribed from the promoter region of cyclin D1.

The first successful observation of in-cell NMR signals of DNA and RNA in living human cells

Uniform 13C/15N-Labeling of DNA by Tandem Repeat Amplification