List of works - Karam B. Singh

A Trimethylguanosine Synthase1-like (TGS1) homologue is implicated in vernalisation and flowering time control

scientific article published on 13 July 2021

A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies

scientific article published on 5 April 2014

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi

scientific article

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution.

scientific article published on 24 August 2016

A glucocorticoid-inducible transcription system causes severe growth defects in Arabidopsis and induces defense-related genes.

scientific article published on October 1999

A novel phloem-specific gene is expressed preferentially in aerial portions of Vicia faba

scientific article published in February 1996

A rapid method for profiling of volatile and semi-volatile phytohormones using methyl chloroformate derivatisation and GC-MS.

scientific article published on 8 September 2015

A single gene, AIN, in Medicago truncatula mediates a hypersensitive response to both bluegreen aphid and pea aphid, but confers resistance only to bluegreen aphid

scientific article published on 18 August 2009

Additive and epistatic interactions between AKR and AIN loci conferring bluegreen aphid resistance and hypersensitivity in Medicago truncatula

scientific article published on 01 September 2019

Advances and challenges in computational prediction of effectors from plant pathogenic fungi

scientific article published on 28 May 2015

Analysis of conglutin seed storage proteins across lupin species using transcriptomic, protein and comparative genomic approaches.

scientific article published on 19 April 2015

Analysis of type 1 metallothionein cDNAs in Vicia faba

scientific article published in March 1997

ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning.

scientific article published on 15 December 2017

Arabidopsis thaliana ethylene-responsive element binding protein (AtEBP), an ethylene-inducible, GCC box DNA-binding protein interacts with an ocs element binding protein

scientific article

AtERF14, a member of the ERF family of transcription factors, plays a nonredundant role in plant defense

scientific article published on 17 November 2006

Characterization and genetic dissection of resistance to spotted alfalfa aphid (Therioaphis trifolii) in Medicago truncatula

scientific article published on 21 September 2013

Characterization and mapping of LanrBo: a locus conferring anthracnose resistance in narrow-leafed lupin (Lupinus angustifolius L.).

scientific article published on 14 July 2015

Characterization of narrow-leaf lupin (Lupinus angustifolius L.) recombinant major allergen IgE-binding proteins and the natural β-conglutin counterparts in sweet lupin seed species

scientific article

Characterization of pea aphid resistance in Medicago truncatula.

scientific article

Characterization of resistance to multiple aphid species (Hemiptera: Aphididae) in Medicago truncatula

scientific article published in February 2007

Characterization of the genetic factors affecting quinolizidine alkaloid biosynthesis and its response to abiotic stress in narrow-leafed lupin (Lupinus angustifolius L.).

scientific article published on 10 May 2018

Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors.

scientific article published on 5 March 2016

Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors

scientific article

Desensitization of GSTF8 induction by a prior chemical treatment is long lasting and operates in a tissue-dependent manner.

scientific article published on 7 July 2006

Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing ⬇️

scientific article published on October 21, 2011

Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors

scientific article published on September 2014

Does the ocs-element occur as a functional component of the promoters of plant genes?

scientific article published on 01 September 1993

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

scientific article published on 27 January 2013

Early induction of the Arabidopsis GSTF8 promoter by specific strains of the fungal pathogen Rhizoctonia solani

scientific article

EffectorP: predicting fungal effector proteins from secretomes using machine learning

scientific article published on 17 December 2015

Ethylene Signaling Is Important for Isoflavonoid-Mediated Resistance to Rhizoctonia solani in Roots of Medicago truncatula

scientific article published on 16 May 2017

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.

scientific article

Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin

scientific article published on 20 January 2018

Functional properties of the anaerobic responsive element of the maize Adh1 gene

scientific article published on 01 October 1990

Genetic Mapping of a Major Resistance Gene to Pea Aphid (Acyrthosipon pisum) in the Model Legume Medicago truncatula

scientific article published on 29 July 2016

Genetic and genomic analysis of Rhizoctonia solani interactions with Arabidopsis; evidence of resistance mediated through NADPH oxidases

scientific article

Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8.

scientific article

Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity.

scientific article published on 19 May 2015

INDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalization response and flowering time in narrow-leafed lupin (Lupinus angustifolius L.)

article

Identification and characterisation of seed storage protein transcripts from Lupinus angustifolius

scientific article

Identification and characterization of resistance to cowpea aphid (Aphis craccivora Koch) in Medicago truncatula ⬇️

scientific article published on July 4, 2012

Identification and profiling of narrow-leafed lupin (Lupinus angustifolius) microRNAs during seed development

scientific article published on 14 February 2019

Identification of Arabidopsis ethylene-responsive element binding factors with distinct induction kinetics after pathogen infection

scientific article

Identification of distinct quantitative trait loci associated with defence against the closely related aphids Acyrthosiphon pisum and A. kondoi in Medicago truncatula.

scientific article published on 21 March 2012

Identification of potential early regulators of aphid resistance in Medicago truncatula via transcription factor expression profiling.

scientific article published on 22 March 2010

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0.

scientific article published on 22 March 2018

Independent action and contrasting phenotypes of resistance genes against spotted alfalfa aphid and bluegreen aphid in Medicago truncatula

scientific article published in January 2007

Interactions between distinct types of DNA binding proteins enhance binding to ocs element promoter sequences.

scientific article published on December 1995

Interactions of Arabidopsis and M. truncatula with the same pathogens differ in dependence on ethylene and ethylene response factors.

scientific article published on April 2011

Involvement of the octadecanoid pathway in bluegreen aphid resistance in Medicago truncatula.

scientific article published in January 2007

Isolation and characterization of two related Arabidopsis ocs-element bZIP binding proteins.

scientific article published on October 1993

Isolation of a Vicia faba metallothionein-like gene: expression in foliar trichomes.

scientific article published on October 1994

Jasmonate Signalling and Defence Responses in the Model Legume Medicago truncatula-A Focus on Responses to Fusarium Wilt Disease

scientific article published on 5 February 2016

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell.

scientific article published on 16 March 2017

Mass-spectrometry data for Rhizoctonia solani proteins produced during infection of wheat and vegetative growth.

scientific article

Mitochondrial complex II has a key role in mitochondrial-derived reactive oxygen species influence on plant stress gene regulation and defense ⬇️

scientific article published on June 13, 2011

Mutant analysis in Arabidopsis provides insight into the molecular mode of action of the auxinic herbicide dicamba

scientific article

Narrow-Leafed Lupin (Lupinus angustifolius) β1- and β6-Conglutin Proteins Exhibit Antifungal Activity, Protecting Plants against Necrotrophic Pathogen Induced Damage from Sclerotinia sclerotiorum and Phytophthora nicotianae

scientific article published on 09 December 2016

Narrow-leafed lupin (Lupinus angustifolius L.) β-conglutin proteins modulate the insulin signaling pathway as potential type 2 diabetes treatment and inflammatory-related disease amelioration

scientific article published on 24 December 2016

Phoma medicaginis stimulates the induction of the octadecanoid and phenylpropanoid pathways in Medicago truncatula

article

Plants versus pathogens: an evolutionary arms race ⬇️

scientific article (publication date: 20 May 2010)

Proteomic analysis of glutathione S -transferases of Arabidopsis thaliana reveals differential salicylic acid-induced expression of the plant-specific phi and tau classes.

scientific article published on January 2004

Quinolizidine Alkaloid Biosynthesis in Lupins and Prospects for Grain Quality Improvement

scientific article (publication date: 2017)

Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat

scientific article

Salicylic Acid-Dependent Plant Stress Signaling via Mitochondrial Succinate Dehydrogenase

scientific article

TGA5 acts as a positive and TGA4 acts as a negative regulator of ocs element activity in Arabidopsis roots in response to defence signals

scientific article published in April 2004

Target genes for OBP3, a Dof transcription factor, include novel basic helix-loop-helix domain proteins inducible by salicylic acid

scientific article published in August 2003

The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress

scientific article published on 18 May 2015

The Arabidopsis RNA Polymerase II Carboxyl Terminal Domain (CTD) Phosphatase-Like1 (CPL1) is a biotic stress susceptibility gene

scientific article published in Scientific Reports

The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress

scientific article

The Arabidopsis is Impaired in Resistance to Root and Leaf Necrotrophic Fungal Pathogens

article

The B-3 ethylene response factor MtERF1-1 mediates resistance to a subset of root pathogens in Medicago truncatula without adversely affecting symbiosis with rhizobia

scientific article published on 16 August 2010

The Medicago truncatula ortholog of Arabidopsis EIN2, sickle, is a negative regulator of symbiotic and pathogenic microbial associations

scientific article published on 24 April 2008

The Medicago truncatula reference accession A17 has an aberrant chromosomal configuration

scientific article published on 01 January 2007

The mitochondrial outer membrane AAA ATPase AtOM66 affects cell death and pathogen resistance in Arabidopsis thaliana

scientific article published on November 2014

The promoter of a H2O2-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding sites.

scientific article published on December 1996

The role of jasmonate signalling in quinolizidine alkaloid biosynthesis, wounding and aphid predation response in narrow-leafed lupin

scientific article published on 01 April 2019

Transcriptional regulation in plants: the importance of combinatorial control

scientific article

Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors.

scientific article

Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers

scientific article

Variability in an effector gene promoter of a necrotrophic fungal pathogen dictates epistasis and effector-triggered susceptibility in wheat

scientific article published on 06 January 2022

ocs element promoter sequences are activated by auxin and salicylic acid in Arabidopsis.

scientific article

List of works by Karam B. Singh

A Trimethylguanosine Synthase1-like (TGS1) homologue is implicated in vernalisation and flowering time control

A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution.

A glucocorticoid-inducible transcription system causes severe growth defects in Arabidopsis and induces defense-related genes.

A novel phloem-specific gene is expressed preferentially in aerial portions of Vicia faba

A rapid method for profiling of volatile and semi-volatile phytohormones using methyl chloroformate derivatisation and GC-MS.

A single gene, AIN, in Medicago truncatula mediates a hypersensitive response to both bluegreen aphid and pea aphid, but confers resistance only to bluegreen aphid

Additive and epistatic interactions between AKR and AIN loci conferring bluegreen aphid resistance and hypersensitivity in Medicago truncatula

Advances and challenges in computational prediction of effectors from plant pathogenic fungi

Analysis of conglutin seed storage proteins across lupin species using transcriptomic, protein and comparative genomic approaches.

Analysis of type 1 metallothionein cDNAs in Vicia faba

ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning.

Arabidopsis thaliana ethylene-responsive element binding protein (AtEBP), an ethylene-inducible, GCC box DNA-binding protein interacts with an ocs element binding protein

AtERF14, a member of the ERF family of transcription factors, plays a nonredundant role in plant defense

Characterization and genetic dissection of resistance to spotted alfalfa aphid (Therioaphis trifolii) in Medicago truncatula

Characterization and mapping of LanrBo: a locus conferring anthracnose resistance in narrow-leafed lupin (Lupinus angustifolius L.).

Characterization of narrow-leaf lupin (Lupinus angustifolius L.) recombinant major allergen IgE-binding proteins and the natural β-conglutin counterparts in sweet lupin seed species

Characterization of pea aphid resistance in Medicago truncatula.

Characterization of resistance to multiple aphid species (Hemiptera: Aphididae) in Medicago truncatula

Characterization of the genetic factors affecting quinolizidine alkaloid biosynthesis and its response to abiotic stress in narrow-leafed lupin (Lupinus angustifolius L.).

Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors.

Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors

Desensitization of GSTF8 induction by a prior chemical treatment is long lasting and operates in a tissue-dependent manner.

Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing ⬇️

Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors

Does the ocs-element occur as a functional component of the promoters of plant genes?

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

Early induction of the Arabidopsis GSTF8 promoter by specific strains of the fungal pathogen Rhizoctonia solani

EffectorP: predicting fungal effector proteins from secretomes using machine learning

Ethylene Signaling Is Important for Isoflavonoid-Mediated Resistance to Rhizoctonia solani in Roots of Medicago truncatula

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.

Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin

Functional properties of the anaerobic responsive element of the maize Adh1 gene

Genetic Mapping of a Major Resistance Gene to Pea Aphid (Acyrthosipon pisum) in the Model Legume Medicago truncatula

Genetic and genomic analysis of Rhizoctonia solani interactions with Arabidopsis; evidence of resistance mediated through NADPH oxidases

Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8.

Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity.

INDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalization response and flowering time in narrow-leafed lupin (Lupinus angustifolius L.)

Identification and characterisation of seed storage protein transcripts from Lupinus angustifolius

Identification and characterization of resistance to cowpea aphid (Aphis craccivora Koch) in Medicago truncatula ⬇️

Identification and profiling of narrow-leafed lupin (Lupinus angustifolius) microRNAs during seed development

Identification of Arabidopsis ethylene-responsive element binding factors with distinct induction kinetics after pathogen infection

Identification of distinct quantitative trait loci associated with defence against the closely related aphids Acyrthosiphon pisum and A. kondoi in Medicago truncatula.

Identification of potential early regulators of aphid resistance in Medicago truncatula via transcription factor expression profiling.

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0.

Independent action and contrasting phenotypes of resistance genes against spotted alfalfa aphid and bluegreen aphid in Medicago truncatula

Interactions between distinct types of DNA binding proteins enhance binding to ocs element promoter sequences.

Interactions of Arabidopsis and M. truncatula with the same pathogens differ in dependence on ethylene and ethylene response factors.

Involvement of the octadecanoid pathway in bluegreen aphid resistance in Medicago truncatula.

Isolation and characterization of two related Arabidopsis ocs-element bZIP binding proteins.

Isolation of a Vicia faba metallothionein-like gene: expression in foliar trichomes.

Jasmonate Signalling and Defence Responses in the Model Legume Medicago truncatula-A Focus on Responses to Fusarium Wilt Disease

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell.

Mass-spectrometry data for Rhizoctonia solani proteins produced during infection of wheat and vegetative growth.

Mitochondrial complex II has a key role in mitochondrial-derived reactive oxygen species influence on plant stress gene regulation and defense ⬇️

Mutant analysis in Arabidopsis provides insight into the molecular mode of action of the auxinic herbicide dicamba

Narrow-Leafed Lupin (Lupinus angustifolius) β1- and β6-Conglutin Proteins Exhibit Antifungal Activity, Protecting Plants against Necrotrophic Pathogen Induced Damage from Sclerotinia sclerotiorum and Phytophthora nicotianae

Narrow-leafed lupin (Lupinus angustifolius L.) β-conglutin proteins modulate the insulin signaling pathway as potential type 2 diabetes treatment and inflammatory-related disease amelioration

Phoma medicaginis stimulates the induction of the octadecanoid and phenylpropanoid pathways in Medicago truncatula

Plants versus pathogens: an evolutionary arms race ⬇️

Proteomic analysis of glutathione S -transferases of Arabidopsis thaliana reveals differential salicylic acid-induced expression of the plant-specific phi and tau classes.

Quinolizidine Alkaloid Biosynthesis in Lupins and Prospects for Grain Quality Improvement

Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat

Salicylic Acid-Dependent Plant Stress Signaling via Mitochondrial Succinate Dehydrogenase

TGA5 acts as a positive and TGA4 acts as a negative regulator of ocs element activity in Arabidopsis roots in response to defence signals

Target genes for OBP3, a Dof transcription factor, include novel basic helix-loop-helix domain proteins inducible by salicylic acid

The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress

The Arabidopsis RNA Polymerase II Carboxyl Terminal Domain (CTD) Phosphatase-Like1 (CPL1) is a biotic stress susceptibility gene

The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress

The Arabidopsis is Impaired in Resistance to Root and Leaf Necrotrophic Fungal Pathogens

The B-3 ethylene response factor MtERF1-1 mediates resistance to a subset of root pathogens in Medicago truncatula without adversely affecting symbiosis with rhizobia

The Medicago truncatula ortholog of Arabidopsis EIN2, sickle, is a negative regulator of symbiotic and pathogenic microbial associations

The Medicago truncatula reference accession A17 has an aberrant chromosomal configuration

The mitochondrial outer membrane AAA ATPase AtOM66 affects cell death and pathogen resistance in Arabidopsis thaliana

The promoter of a H2O2-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding sites.

The role of jasmonate signalling in quinolizidine alkaloid biosynthesis, wounding and aphid predation response in narrow-leafed lupin

Transcriptional regulation in plants: the importance of combinatorial control

Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors.