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List of works by Katharina Nöh

13C labeling experiments at metabolic nonstationary conditions: an exploratory study.

scientific article

13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis

scientific article published on August 2013

13CFLUX2--high-performance software suite for (13)C-metabolic flux analysis.

scientific article

A Pareto approach to resolve the conflict between information gain and experimental costs: Multiple-criteria design of carbon labeling experiments

scientific article

A Primer to13C Metabolic Flux Analysis

A roadmap for interpreting (13)C metabolite labeling patterns from cells

scientific article

A scientific workflow framework for (13)C metabolic flux analysis.

scientific article published on 22 December 2015

An Online Provenance Service for Distributed Metabolic Flux Analysis Workflows

Analyzing Microbial Population Heterogeneity-Expanding the Toolbox of Microfluidic Single-Cell Cultivations

scientific article published on 26 April 2019

Application of a genetically encoded biosensor for live cell imaging of L-valine production in pyruvate dehydrogenase complex-deficient Corynebacterium glutamicum strains

scientific article

Cloud MapReduce for Monte Carlo bootstrap applied to Metabolic Flux Analysis

Collisional fragmentation of central carbon metabolites in LC-MS/MS increases precision of ¹³C metabolic flux analysis

scientific article

Combined fluxomics and transcriptomics analysis of glucose catabolism via a partially cyclic pentose phosphate pathway in Gluconobacter oxydans 621H.

scientific article

Comparative 13C metabolic flux analysis of pyruvate dehydrogenase complex-deficient, L-valine-producing Corynebacterium glutamicum.

scientific article published on 22 July 2011

Computational tools for isotopically instationary 13C labeling experiments under metabolic steady state conditions.

scientific article published on 12 June 2006

Corrigendum to Stage-specific metabolic features of differentiating neurons: Implications for toxicant sensitivity Toxicol Appl Pharmacol, 354 (2018) 64-80

scientific article published on 16 April 2019

Corrigendum: The Design of FluxML: A Universal Modeling Language for 13C Metabolic Flux Analysis

scientific article published on 30 July 2019

Current state and challenges for dynamic metabolic modeling

scientific article

Customizable Visualization of Multi-omics Data in the Context of Biochemical Networks

scholarly article published July 2009

Customizable Visualization on Demand for Hierarchically Organized Information in Biochemical Networks

scholarly article by Peter Droste et al published 2010 in Lecture Notes in Computer Science

Determination of flux directions by thermodynamic network analysis: Computing informative metabolite pools

Error propagation analysis for quantitative intracellular metabolomics

scientific article published on 21 November 2012

Experimental design principles for isotopically instationary 13C labeling experiments

scientific article published in June 2006

First- and second-order parameter sensitivities of a metabolically and isotopically non-stationary biochemical network model

scholarly article published 19 November 2012

Fluxome study of Pseudomonas fluorescens reveals major reorganisation of carbon flux through central metabolic pathways in response to inactivation of the anti-sigma factor MucA.

scientific article

From stationary to instationary metabolic flux analysis

scientific article

Germination and Growth Analysis of at the Single-Cell Level Under Varying Medium Compositions

article

HOPS: high-performance library for (non-)uniform sampling of convex-constrained models

scientific article published on 12 October 2020

How to measure metabolic fluxes: a taxonomic guide for (13)C fluxomics

scientific article published on 19 December 2014

Image-Based Single Cell Profiling: High-Throughput Processing of Mother Machine Experiments.

scientific article

Isotopically non-stationary metabolic flux analysis: complex yet highly informative

scientific article published on 24 April 2013

Live cell imaging of SOS and prophage dynamics in isogenic bacterial populations

scientific article published on 3 August 2015

Metabolic Flux Analysis in the Cloud

Metabolic engineering of Corynebacterium glutamicum for methanol metabolism

scientific article published on 16 January 2015

Metabolic flux analysis at ultra short time scale: isotopically non-stationary 13C labeling experiments

scientific article published in December 2006

Metabolic isotopomer labeling systems. Part III: path tracing

scientific article published on 16 March 2013

Natural isotope correction of MS/MS measurements for metabolomics and (13)C fluxomics.

scientific article

Non-Invasive Microbial Metabolic Activity Sensing at Single Cell Level by Perfusion of Calcein Acetoxymethyl Ester

scientific article (publication date: 2015)

Omix - A Visualization Tool for Metabolic Networks with Highest Usability and Customizability in Focus

scholarly article by Peter Droste et al published 25 April 2013 in Chemie Ingenieur Technik

Rapid inoculation of single bacteria into parallel picoliter fermentation chambers

Reversible jump MCMC for multi-model inference in Metabolic Flux Analysis

scientific article published on 01 January 2020

Revisiting the Growth Modulon of Corynebacterium glutamicum Under Glucose Limited Chemostat Conditions

scientific article published on 15 October 2020

Semi-automatic drawing of metabolic networks

Separation of 13C- and 15N-Isotopologues of Amino Acids with a Primary Amine without Mass Resolution by Means of O-Phthalaldehyde Derivatization and Collision Induced Dissociation

scientific article published on 18 October 2019

Spatiotemporal microbial single-cell analysis using a high-throughput microfluidics cultivation platform

scientific article published on 8 September 2015

Stage-specific metabolic features of differentiating neurons: Implications for toxicant sensitivity.

scientific article published on 23 December 2017

Stationary versus non-stationary 13C-MFA: A comparison using a consistent dataset

scientific article published on 16 July 2010

The Design of FluxML: A Universal Modeling Language for 13C Metabolic Flux Analysis

scientific article published on 24 May 2019

The benefits of being transient: isotope-based metabolic flux analysis at the short time scale ⬇️

scientific article published on 06 July 2011

The topology of metabolic isotope labeling networks

scientific article

To be certain about the uncertainty: Bayesian statistics for 13 C metabolic flux analysis.

scientific article published on 11 July 2017

Towards a Mechanistic Understanding of Factors Controlling the Stereoselectivity of Transketolase

Visual workflows for 13C-metabolic flux analysis

scientific article

Visualizing multi-omics data in metabolic networks with the software Omix: a case study

scientific article

Vizardous: interactive analysis of microbial populations with single cell resolution.

scientific article published on 10 August 2015

When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis

scientific article published on 01 April 2019

Workflows for Metabolic Flux Analysis: Data Integration and Human Interaction

microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation

scientific article published in 2022

mycelyso - high-throughput analysis of Streptomyces mycelium live cell imaging data

scientific article published on 04 September 2019

¹³C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation

scientific article

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