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List of works by Tom Beeckman

A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation

scientific article published on 16 August 2018

A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development.

scientific article

A hormone and proteome approach to picturing the initial metabolic events during Plasmodiophora brassicae infection on Arabidopsis.

scientific article

A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis

scientific article

A new role for glutathione in the regulation of root architecture linked to strigolactones. ⬇️

scientific article

A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity

scientific article

A novel protein family mediates Casparian strip formation in the endodermis

scientific article published in May 2011

A novel role for abscisic acid emerges from underground

scientific article published on 4 August 2006

A novel sensor to map auxin response and distribution at high spatio-temporal resolution

scientific article published on 15 January 2012

A role for AtWRKY23 in feeding site establishment of plant-parasitic nematodes

scientific article published on 3 July 2008

A role for the root cap in root branching revealed by the non-auxin probe naxillin

scientific article published on 12 August 2012

A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate auxin response during lateral root development

scientific article

ABI3 affects plastid differentiation in dark-grown Arabidopsis seedlings

scientific article published in January 2000

Accumulation pattern of IgG antibodies and Fab fragments in transgenic Arabidopsis thaliana plants

scientific article

Adventitious root induction in Arabidopsis thaliana as a model for in vitro root organogenesis

scientific article published in January 2013

An MAP Kinase Cascade Downstream of RGF/GLV Peptides and Their RGI Receptors Regulates Root Development

scientific article published on 22 October 2020

An abscisic acid-sensitive checkpoint in lateral root development of Arabidopsis

scientific article

An easy and versatile embedding method for transverse sections

scientific article published in January 2004

Analyzing lateral root development: how to move forward

scientific article published on 6 January 2012

Arabidopsis WEE1 kinase controls cell cycle arrest in response to activation of the DNA integrity checkpoint.

scientific article

Arabidopsis lateral root development: an emerging story

scientific article published on 24 June 2009

Asymmetric cell division in land plants and algae: the driving force for differentiation.

scientific article published on March 2011

Auxin Function in the Brown Alga Dictyota dichotoma

scientific article published on 12 November 2018

Auxin and epigenetic regulation of SKP2B, an F-box that represses lateral root formation

scientific article

Auxin control of root development.

scientific article

Auxin reflux between the endodermis and pericycle promotes lateral root initiation.

scientific article published on 23 November 2012

Auxin transport and activity regulate stomatal patterning and development

scientific article

Auxin transport promotes Arabidopsis lateral root initiation

scientific article

Auxin-dependent cell cycle reactivation through transcriptional regulation of Arabidopsis E2Fa by lateral organ boundary proteins.

scientific article published on 14 October 2011

Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis

scientific article

Auxin-mediated cell cycle activation during early lateral root initiation

scientific article

Auxin’s origin: do PILS hold the key?

B1-type cyclin-dependent kinases are essential for the formation of stomatal complexes in Arabidopsis thaliana

scientific article

Bimodular auxin response controls organogenesis in Arabidopsis

scientific article

CKS1At overexpression in Arabidopsis thaliana inhibits growth by reducing meristem size and inhibiting cell-cycle progression.

scientific article

CRISPR-TSKO: A Technique for Efficient Mutagenesis in Specific Cell Types, Tissues, or Organs in Arabidopsis

scientific article published on 27 September 2019

Calcium is an organizer of cell polarity in plants.

scientific article published on 25 February 2015

Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana

scientific article published on 21 October 2005

Cell-to-cell communication during lateral root development.

scientific article published on 04 February 2014

Changes in hydrogen peroxide homeostasis trigger an active cell death process in tobacco

scientific article published in February 2003

Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling

scientific article (publication date: 26 June 2009)

Comparative transcriptomics as a tool for the identification of root branching genes in maize.

scientific article

Control of proliferation, endoreduplication and differentiation by the Arabidopsis E2Fa-DPa transcription factor

scientific article

Cyclin-dependent kinase activity maintains the shoot apical meristem cells in an undifferentiated state

scientific article

Cytokinin response factors regulate PIN-FORMED auxin transporters.

scientific article

Cytokinins act directly on lateral root founder cells to inhibit root initiation

scientific article published on 7 December 2007

Developmental expression of the Arabidopsis thaliana CycA2;1 gene

scientific article published in October 2000

Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis

scientific article

Diarch symmetry of the vascular bundle in Arabidopsis root encompasses the pericycle and is reflected in distich lateral root initiation

scientific article

Dissecting Arabidopsis lateral root development

scientific article

EXPANSIN A1-mediated radial swelling of pericycle cells positions anticlinal cell divisions during lateral root initiation

scientific article published on 03 April 2019

Egg activation-triggered shape change in the Dictyota dichotoma (Phaeophyceae) zygote is actin-myosin and secretion dependent

scientific article published on 7 August 2017

Embedding thin plant specimens for oriented sectioning

scientific article published in January 2000

Ethylene regulates root growth through effects on auxin biosynthesis and transport-dependent auxin distribution.

scientific article

Ethylene-Mediated Regulation of A2-Type CYCLINs Modulates Hyponastic Growth in Arabidopsis.

scientific article published on 3 June 2015

Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays. ⬇️

scientific article published on 20 July 2015

Expansive evolution of the trehalose-6-phosphate phosphatase gene family in Arabidopsis

scientific article (publication date: October 2012)

Exploiting natural variation in root system architecture via genome-wide association studies

scientific article published on 20 January 2020

Extensive expression regulation and lack of heterologous enzymatic activity of the Class II trehalose metabolism proteins from Arabidopsis thaliana.

scientific article

Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana

scientific article

Fully automated compound screening in Arabidopsis thaliana seedlings

scientific article published in January 2014

Functional analysis of cyclin-dependent kinase inhibitors of Arabidopsis

scientific article published in July 2001

Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression

scientific article published in October 2005

GOLVEN peptide signalling through RGI receptors and MPK6 restricts asymmetric cell division during lateral root initiation

scientific article published on 11 May 2020

GOLVEN peptides as important regulatory signalling molecules of plant development

scientific article

GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses

scientific article

Gene silencing induced by hairpin or inverted repeated sense transgenes varies among promoters and cell types

scientific article published in September 2009

Genetic complexity of cellulose synthase a gene function in Arabidopsis embryogenesis.

scientific article published in December 2002

Hydraulic flux–responsive hormone redistribution determines root branching

scientific article published on 18 November 2022

Identification of Novel Inhibitors of Auxin-Induced Ca Signaling via a Plant-Based Chemical Screen

article

In silico analyses of pericycle cell populations reinforce their relation with associated vasculature in Arabidopsis

scientific article

Increased leakiness of the tetracycline-inducible Triple-Op promoter in dividing cells renders it unsuitable for high inducible levels of a dominant negative CDC2aAt gene

scientific article published in October 2000

Inducible system for lateral roots in Arabidopsis thaliana and maize

scientific article

Lateral root development in Arabidopsis: fifty shades of auxin

scientific article published on 20 May 2013

Lateral root initiation or the birth of a new meristem

scientific article

Manipulation of auxin transport in plant roots during Rhizobium symbiosis and nematode parasitism.

scientific article published on 29 September 2009

Message in a bottle: small signalling peptide outputs during growth and development.

scientific article published on 07 September 2013

Model-based analysis of Arabidopsis leaf epidermal cells reveals distinct division and expansion patterns for pavement and guard cells

scientific article published on 21 June 2011

Molecular characterisation of Arabidopsis lines tagged with a promoterless gus gene.

scientific article published in January 2001

Morph-ratio variation, population size and female reproductive success in distylous Pulmonaria officinalis (Boraginaceae).

scientific article published in September 2008

Nature and Nurture: Genotype-Dependent Differential Responses of Root Architecture to Agar and Soil Environments

Nitrate contra auxin: nutrient sensing by roots

scientific article published in June 2010

OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.

scientific article published on 30 September 2015

Overexpression of the trehalase gene AtTRE1 leads to increased drought stress tolerance in Arabidopsis and is involved in abscisic acid-induced stomatal closure

scientific article published on 22 January 2013

Peptide-Receptor Signaling Controls Lateral Root Development

scientific article published on 20 December 2019

Pericycle

scientific article

Phenotypic alterations in Arabidopsis thaliana plants caused by Rhodococcus fascians infection

scientific article

Phloem-associated auxin response maxima determine radial positioning of lateral roots in maize

scientific article

Photopolarization of Fucus zygotes is determined by time sensitive vectorial addition of environmental cues during axis amplification

scientific article published on 3 February 2015

Plant development. Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation.

scientific article

Plant development. Integration of growth and patterning during vascular tissue formation in Arabidopsis

scientific article published in August 2014

Plant developmental biologists meet on stairways in Matera

scientific article published in October 2012

Plasma membrane calcium ATPases are important components of receptor-mediated signaling in plant immune responses and development

scientific article published on 25 April 2012

Plastid-localized amino acid metabolism coordinates rice ammonium tolerance and nitrogen use efficiency

scientific article published in 2023

Post-embryonic root organogenesis in cereals: branching out from model plants

scientific article

RBOH-mediated ROS production facilitates lateral root emergence in Arabidopsis

scientific article

Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root.

scientific article

Redundant and non-redundant roles of the trehalose-6-phosphate phosphatases in leaf growth, root hair specification and energy-responses in Arabidopsis ⬇️

scientific article published on 8 January 2013

Repression of early lateral root initiation events by transient water deficit in barley and maize

scientific article

Root Cap-Derived Auxin Pre-patterns the Longitudinal Axis of the Arabidopsis Root

scientific article published on 7 May 2015

Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism

scientific article published on 5 March 2012

SCF(TIR1/AFB)-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism.

scientific article published on 4 December 2012

Sequential induction of auxin efflux and influx carriers regulates lateral root emergence

scientific article published on 22 October 2013

Small-molecule dissection of brassinosteroid signaling

scientific article published in January 2012

Small-molecule screens to study lateral root development

scientific article published in January 2013

Spatiotemporal development of suberized barriers in cork oak taproots

scientific article published in 2021

Strigolactones affect lateral root formation and root-hair elongation in Arabidopsis

scientific article published on 16 November 2010

Strigolactones are involved in root response to low phosphate conditions in Arabidopsis

scientific article published in November 2012

Strigolactones spatially influence lateral root development through the cytokinin signaling network.

scientific article

Strigolactones suppress adventitious rooting in Arabidopsis and pea

scientific article published in April 2012

Superroot, a recessive mutation in Arabidopsis, confers auxin overproduction.

scientific article published in September 1995

Synthetic molecules: helping to unravel plant signal transduction

scientific article published on 03 March 2013

Systematic analysis of cell-cycle gene expression during Arabidopsis development

scientific article published on 11 April 2009

TPX2-LIKE PROTEIN3 Is the Primary Activator of α-Aurora Kinases and Is Essential for Embryogenesis

scientific article published on 16 May 2019

Tackling drought stress: receptor-like kinases present new approaches

scientific article (publication date: June 2012)

The Arabidopsis locus RCB mediates upstream regulation of mitotic gene expression

scientific article

The CEP family in land plants: evolutionary analyses, expression studies, and role in Arabidopsis shoot development

scientific article

The Emerging Role of Reactive Oxygen Species Signaling during Lateral Root Development

scientific article published on 30 May 2014

The GLV6/RGF8/CLEL2 peptide regulates early pericycle divisions during lateral root initiation

scientific article

The auxin influx carrier LAX3 promotes lateral root emergence

article

The cyclin-dependent kinase inhibitor KRP2 controls the onset of the endoreduplication cycle during Arabidopsis leaf development through inhibition of mitotic CDKA;1 kinase complexes

scientific article published on 29 April 2005

The dynamic nature and regulation of the root clock

scientific article published on 03 February 2020

The evolution of root branching: increasing the level of plasticity

scientific article published on 01 February 2019

The ins and outs of the plant cell cycle

scientific article published on August 2007

The past, present, and future of chemical biology in auxin research

scientific article published on December 2009

The peri-cell-cycle in Arabidopsis

scientific article published in March 2001

The roots of a new green revolution

scientific article published on 17 September 2010

Three-dimensional patterns of cell division and expansion throughout the development of Arabidopsis thaliana leaves.

scientific article published on 9 September 2014

Tightly controlled WRKY23 expression mediates Arabidopsis embryo development

scientific article

To branch or not to branch: the role of pre-patterning in lateral root formation

scientific article

Traffic control in the root: keeping root branching in check

scientific article published in July 2013

Transcript profiling of early lateral root initiation

scholarly article

Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis

scientific article published on 17 January 2012

Transcriptional and functional classification of the GOLVEN/ROOT GROWTH FACTOR/CLE-like signaling peptides reveals their role in lateral root and hair formation

scientific article

Transcriptional regulation of PIN genes by FOUR LIPS and MYB88 during Arabidopsis root gravitropism

scientific article

Two-step cell polarization in algal zygotes

scientific article

Unraveling the evolution of auxin signaling

scientific article

VisuaLRTC: a new view on lateral root initiation by combining specific transcriptome data sets

scientific article (publication date: May 2010)

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