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List of works by Aldert Zomer

A Case of Persistent Diarrhea in a Man with the Molecular Detection of Various <i>Campylobacter</i> species and the First Isolation of <i>candidatus</i> <i>Campylobacter infans</i>

scientific article published on 30 November 2020

A bile-inducible membrane protein mediates bifidobacterial bile resistance.

scientific article published on February 2012

A conserved two-component signal transduction system controls the response to phosphate starvation in Bifidobacterium breve UCC2003.

scientific article

A predictive signature gene set for discriminating active from latent tuberculosis in Warao Amerindian children ⬇️

scientific article

Adaptation of Bordetella pertussis to the respiratory tract.

scientific article published on 8 March 2018

Advances and perspectives in computational prediction of microbial gene essentiality

scientific article published on 08 February 2016

Bacterial lipopolysaccharide inhibits influenza virus infection of human macrophages and the consequent induction of CD8+ T cell immunity.

scientific article published on 20 August 2013

Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection.

scientific article published on 23 January 2012

Bordetella pertussis population dynamics and phylogeny in Japan after adoption of acellular pertussis vaccines.

scientific article

Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).

scientific article published on 6 April 2018

Campylobacter fetus Subspecies Contain Conserved Type IV Secretion Systems on Multiple Genomic Islands and Plasmids

scientific article

Cell envelope stress induced by the bacteriocin Lcn972 is sensed by the Lactococcal two-component system CesSR.

scientific article published in April 2007

Cell wall attachment of a widely distributed peptidoglycan binding domain is hindered by cell wall constituents

scientific article published on 8 April 2003

Cellodextrin utilization by bifidobacterium breve UCC2003

scientific article

Characterization of the serpin-encoding gene of Bifidobacterium breve 210B

scientific article

Characterization of two novel alpha-glucosidases from Bifidobacterium breve UCC2003.

scientific article published on 29 December 2008

Comparative analyses of prophage-like elements present in bifidobacterial genomes

scientific article published on 04 September 2009

Comparative analyses of prophage-like elements present in two Lactococcus lactis strains

scientific article

Comparative genomics and functional analysis of the 936 group of lactococcal Siphoviridae phages

scientific article published on 19 February 2016

Comparative genomics of phenotypic antimicrobial resistances in methicillin-resistant Staphylococcus pseudintermedius of canine origin

scientific article published on 22 September 2018

Comparative genomics of the Bifidobacterium breve taxon

scientific article

Complete Genome of Lactococcus lactis subsp. cremoris UC509.9, Host for a Model Lactococcal P335 Bacteriophage

scientific article published on 31 January 2013

Complete genome sequence of Bifidobacterium bifidum S17

scientific article

Comprehensive Identification of Meningococcal Genes and Small Noncoding RNAs Required for Host Cell Colonization

scientific article

Correction: Differentially Expressed Genes in Bordetella pertussis Strains Belonging to a Lineage Which Recently Spread Globally.

scientific article

Deciphering the distance to antibiotic resistance for the pneumococcus using genome sequencing data

scientific article

Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets

scientific article published on 20 July 2021

Differentially expressed genes in Bordetella pertussis strains belonging to a lineage which recently spread globally

scientific article published on 08 January 2014

ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data.

scientific article

From microbial gene essentiality to novel antimicrobial drug targets

scientific article

Functional characterization of a STAT3-dependent dendritic cell-derived CD14(+) cell population arising upon IL-10-driven maturation.

scientific article

Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor

scientific article

Genetic requirements for Moraxella catarrhalis growth under iron‐limiting conditions ⬇️

scientific article published on November 19, 2012

Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging

scientific article

Genome sequence of Moraxella catarrhalis RH4, an isolate of seroresistant lineage

scientific article published on December 2012

Genome-wide fitness analyses of the foodborne pathogen Campylobacter jejuni in in vitro and in vivo models

scientific article published on 28 April 2017

Genome-wide identification of genes essential for the survival of Streptococcus pneumoniae in human saliva

scientific article

Global transcriptional landscape and promoter mapping of the gut commensal Bifidobacterium breve UCC2003.

scientific article published on 28 December 2017

Highly conserved nucleotide phosphatase essential for membrane lipid homeostasis in Streptococcus pneumoniae.

scientific article published on 21 December 2015

Identification of conditionally essential genes for Streptococcus suis infection in pigs

scientific article published on 01 December 2020

Identification of iron-regulated genes of Bifidobacterium breve UCC2003 as a basis for controlled gene expression ⬇️

scientific article published on May 1, 2012

Immunogenicity of a malaria parasite antigen displayed by Lactococcus lactis in oral immunisations

scientific article published on 2 March 2006

Immunomodulation and effects on microbiota after in ovo administration of chicken cathelicidin-2.

scientific article

Influenza-induced inflammation drives pneumococcal otitis media.

scientific article published on 14 January 2013

Intertwinement of stress response regulons in Bifidobacterium breve UCC2003 ⬇️

scientific article published on February 11, 2010

Lactobacillus reuteri 100-23 modulates urea hydrolysis in the murine stomach.

scientific article

Lytic infection of Lactococcus lactis by bacteriophages Tuc2009 and c2 triggers alternative transcriptional host responses

scientific article published on 31 May 2013

Nasopharyngeal gene expression, a novel approach to study the course of respiratory syncytial virus infection.

scientific article published on 26 September 2014

Natural genetic transformation generates a population of merodiploids in Streptococcus pneumoniae

scientific article

Nontypeable Haemophilus influenzae carbonic anhydrase is important for environmental and intracellular survival.

scientific article published on 5 April 2013

Outbreak of Campylobacter fetus infection after consumption of unpasteurized sheep's milk cheeses: how to trace the source?

scientific article published in January 2017

Peripheral blood vessels are a niche for blood-borne meningococci.

scientific article

Phage-Derived Protein Induces Increased Platelet Activation and Is Associated with Mortality in Patients with Invasive Pneumococcal Disease

scientific article

Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies

scientific article

Projector: automatic contig mapping for gap closure purposes.

scientific article published on November 2003

Prospective observational study in two Dutch hospitals to assess the performance of inflammatory plasma markers to determine disease severity of viral respiratory tract infections in children

scientific article published on 30 June 2017

Proteomics-identified Bvg-activated autotransporters protect against bordetella pertussis in a mouse model

scientific article

Ribose utilization by the human commensal Bifidobacterium breve UCC2003

scientific article published on 15 October 2009

Short-Term Hypoxia Dampens Inflammation in vivo via Enhanced Adenosine Release and Adenosine 2B Receptor Stimulation.

scientific article

Streptococcus pneumoniae PspC-subgroup prevalence in invasive disease and difference in contribution to complement evasion.

scientific article

Streptococcus pneumoniae folate biosynthesis responds to environmental CO2 levels

scientific article

Streptococcus pneumoniae serine protease HtrA, but not SFP or PrtA, is a major virulence factor in pneumonia

scientific article

Supervised Lowess normalization of comparative genome hybridization data--application to lactococcal strain comparisons

scientific article

Th17-mediated cross protection against pneumococcal carriage by vaccination with a variable antigen

scientific article published on 20 September 2017

The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity

scientific article

The adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition

scientific article

The post-vaccine microevolution of invasive Streptococcus pneumoniae ⬇️

scientific article

Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363.

scientific article

Transcription of two adjacent carbohydrate utilization gene clusters in Bifidobacterium breve UCC2003 is controlled by LacI- and repressor open reading frame kinase (ROK)-type regulators

scientific article

Transcriptome analysis and related databases of Lactococcus lactis

scientific article

Transcriptome assists prognosis of disease severity in respiratory syncytial virus infected infants

scientific article published on 11 November 2016

Transmissible Mycobacterium tuberculosis Strains Share Genetic Markers and Immune Phenotypes.

scientific article published on 20 December 2016

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