List of works - Phanourios Tamamis

A Novel Amyloid Designable Scaffold and Potential Inhibitor Inspired by GAIIG of Amyloid Beta and the HIV-1 V3 loop

scientific article

Amyloid Peptide Scaffolds Coordinate with Alzheimer's Disease Drugs

scientific article published on 10 January 2020

Amyloid-like self-assembly of peptide sequences from the adenovirus fiber shaft: insights from molecular dynamics simulations

scientific article published in November 2009

Combination of theoretical and experimental approaches for the design and study of fibril-forming peptides.

scientific article published on January 2014

Computational Design of Functional Amyloid Materials with Cesium Binding, Deposition, and Capture Properties

scientific article published on 20 July 2018

Computational design of amyloid self-assembling peptides bearing aromatic residues and the cell adhesive motif Arg-Gly-Asp

Conformational analysis of compstatin analogues with molecular dynamics simulations in explicit water

scientific article

Correction to "Interactions between Curcumin Derivatives and Amyloid-β Fibrils: Insights from Molecular Dynamics Simulations"

scientific article published on 23 July 2020

Correction to “UV Resonance Raman Study of TTR(105–115) Structural Evolution as a Function of Temperature”

scientific article published on 28 July 2011

Editor's Highlight: Microbial-Derived 1,4-Dihydroxy-2-naphthoic Acid and Related Compounds as Aryl Hydrocarbon Receptor Agonists/Antagonists: Structure-Activity Relationships and Receptor Modeling.

scientific article published on 11 November 2016

Elucidating a key anti-HIV-1 and cancer-associated axis: the structure of CCL5 (Rantes) in complex with CCR5.

scientific article

Elucidating the multi-targeted anti-amyloid activity and enhanced islet amyloid polypeptide binding of -wrapins

scientific article published on 21 February 2018

Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family.

scientific article

High-Efficiency Fluorescence through Bioinspired Supramolecular Self-Assembly

scientific article published on 07 February 2020

Highly Accurate Structure-Based Prediction of HIV-1 Coreceptor Usage Suggests Intermolecular Interactions Driving Tropism

scientific article published on 9 February 2016

Insights into the mechanism of C5aR inhibition by PMX53 via implicit solvent molecular dynamics simulations and docking

scientific article

Insights into the structure, correlated motions, and electrostatic properties of two HIV-1 gp120 V3 loops

scientific article

Interactions between Curcumin Derivatives and Amyloid-β Fibrils: Insights from Molecular Dynamics Simulations

scientific article published on 20 December 2019

Molecular dynamics in drug design: new generations of compstatin analogs.

scientific article published on 9 February 2012

Molecular recognition of CCR5 by an HIV-1 gp120 V3 loop

scientific article

Molecular recognition of CXCR4 by a dual tropic HIV-1 gp120 V3 loop

scientific article

Montmorillonites Can Tightly Bind Glyphosate and Paraquat Reducing Toxin Exposures and Toxicity

scientific article published on 17 October 2019

Novel compstatin family peptides inhibit complement activation by drusen-like deposits in human retinal pigmented epithelial cell cultures.

scientific article published on 15 August 2013

Princeton_TIGRESS: protein geometry refinement using simulations and support vector machines.

scientific article

Self-Assembled Amyloid Peptides with Arg-Gly-Asp (RGD) Motifs As Scaffolds for Tissue Engineering

scholarly article by Graziano Deidda et al published 30 November 2016 in ACS biomaterials science & engineering

Self-assembly of phenylalanine oligopeptides: insights from experiments and simulations

scientific article published on June 2009

Species specificity of the complement inhibitor compstatin investigated by all-atom molecular dynamics simulations

scientific article

UV resonance Raman study of TTR(105-115) structural evolution as a function of temperature.

scientific article

Uncovering the Binding and Specificity of β-Wrapins for Amyloid-β and α-Synuclein

scientific article published on 9 December 2016

Virtual Screening of Chemical Compounds for Discovery of Complement C3 Ligands

scientific article published on 15 June 2018

List of works by Phanourios Tamamis

A Novel Amyloid Designable Scaffold and Potential Inhibitor Inspired by GAIIG of Amyloid Beta and the HIV-1 V3 loop

Amyloid Peptide Scaffolds Coordinate with Alzheimer's Disease Drugs

Amyloid-like self-assembly of peptide sequences from the adenovirus fiber shaft: insights from molecular dynamics simulations

Combination of theoretical and experimental approaches for the design and study of fibril-forming peptides.

Computational Design of Functional Amyloid Materials with Cesium Binding, Deposition, and Capture Properties

Computational design of amyloid self-assembling peptides bearing aromatic residues and the cell adhesive motif Arg-Gly-Asp

Conformational analysis of compstatin analogues with molecular dynamics simulations in explicit water

Correction to "Interactions between Curcumin Derivatives and Amyloid-β Fibrils: Insights from Molecular Dynamics Simulations"

Correction to “UV Resonance Raman Study of TTR(105–115) Structural Evolution as a Function of Temperature”

Editor's Highlight: Microbial-Derived 1,4-Dihydroxy-2-naphthoic Acid and Related Compounds as Aryl Hydrocarbon Receptor Agonists/Antagonists: Structure-Activity Relationships and Receptor Modeling.

Elucidating a key anti-HIV-1 and cancer-associated axis: the structure of CCL5 (Rantes) in complex with CCR5.

Elucidating the multi-targeted anti-amyloid activity and enhanced islet amyloid polypeptide binding of -wrapins

Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family.

High-Efficiency Fluorescence through Bioinspired Supramolecular Self-Assembly

Highly Accurate Structure-Based Prediction of HIV-1 Coreceptor Usage Suggests Intermolecular Interactions Driving Tropism

Insights into the mechanism of C5aR inhibition by PMX53 via implicit solvent molecular dynamics simulations and docking

Insights into the structure, correlated motions, and electrostatic properties of two HIV-1 gp120 V3 loops

Interactions between Curcumin Derivatives and Amyloid-β Fibrils: Insights from Molecular Dynamics Simulations

Molecular dynamics in drug design: new generations of compstatin analogs.

Molecular recognition of CCR5 by an HIV-1 gp120 V3 loop

Molecular recognition of CXCR4 by a dual tropic HIV-1 gp120 V3 loop

Montmorillonites Can Tightly Bind Glyphosate and Paraquat Reducing Toxin Exposures and Toxicity

Novel compstatin family peptides inhibit complement activation by drusen-like deposits in human retinal pigmented epithelial cell cultures.

Princeton_TIGRESS: protein geometry refinement using simulations and support vector machines.

Self-Assembled Amyloid Peptides with Arg-Gly-Asp (RGD) Motifs As Scaffolds for Tissue Engineering

Self-assembly of phenylalanine oligopeptides: insights from experiments and simulations

Species specificity of the complement inhibitor compstatin investigated by all-atom molecular dynamics simulations

UV resonance Raman study of TTR(105-115) structural evolution as a function of temperature.

Uncovering the Binding and Specificity of β-Wrapins for Amyloid-β and α-Synuclein

Virtual Screening of Chemical Compounds for Discovery of Complement C3 Ligands