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List of works by Maria Suarez-Diez

A Constraint-Based Model Analysis of Enterocyte Mitochondrial Adaptation to Dietary Interventions of Lipid Type and Lipid Load.

scientific article

Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system

scientific article published on 20 April 2012

Aspergillus niger Secretes Citrate to Increase Iron Bioavailability.

scientific article published on 2 August 2017

Aspergillus niger citrate exporter revealed by comparison of two alternative citrate producing conditions

scientific article published on 01 April 2019

Building pathway graphs from BioPAX data in R.

scientific article

Cas3-Derived Target DNA Degradation Fragments Fuel Primed CRISPR Adaptation

scientific article published on 18 August 2016

Cofactors revisited - Predicting the impact of flavoprotein-related diseases on a genome scale

scientific article published on 29 October 2018

Comparative proteomics of Rhizopus delemar ATCC 20344 unravels the role of amino acid catabolism in fumarate accumulation

scientific article published on 30 March 2017

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

scientific article (publication date: 6 December 2016)

Comprehensive insights into transcriptional adaptation of intracellular mycobacteria by microbe-enriched dual RNA sequencing

scientific article

Computational protein design with electrostatic focusing: experimental characterization of a conditionally folded helical domain with a reduced amino acid alphabet.

scientific article

Consistency, Inconsistency and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome Scale Metabolic Modelling

scientific article published on 27 December 2018

Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling

scientific article published on 06 February 2019

Degenerate target sites mediate rapid primed CRISPR adaptation.

scientific article

Effects of Sample Size and Dimensionality on the Performance of Four Algorithms for Inference of Association Networks in Metabonomics.

scientific article published on 23 October 2015

From the environment to the host: re-wiring of the transcriptome of Pseudomonas aeruginosa from 22°C to 37°C.

scientific article

Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity

scientific article

Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain-Barré-Stohl syndrome

scientific article published on 27 March 2021

Genome-Scale Model and Omics Analysis of Metabolic Capacities of Akkermansia muciniphila Reveal a Preferential Mucin-Degrading Lifestyle

scientific article published on 7 July 2017

Genome-scale metabolic modeling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production

scientific article published on 06 January 2021

Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol

scientific article published on 15 September 2016

High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

scientific article published on 30 December 2019

In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions

scientific article published on 22 October 2019

Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis

scientific article

Interoperable genome annotation with GBOL, an extendable infrastructure for functional data mining

Metabolic modeling of energy balances in Mycoplasma hyopneumoniae shows that pyruvate addition increases growth rate

scientific article published on 10 June 2017

Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage

scientific article

Model reduction of genome-scale metabolic models as a basis for targeted kinetic models

scientific article published in 2021

Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media

scientific article published on 23 October 2020

Model-driven design of a minimal medium for Akkermansia muciniphila confirms mucus adaptation

scientific article

Modeling Host-Pathogen Interaction to Elucidate the Metabolic Drug Response of Intracellular

scientific article published on 08 May 2019

Modeling the Metabolic State of Upon Infection

scholarly article by Rienk A Rienksma et al published 2018 in Frontiers in cellular and infection microbiology

Modulating D-amino acid oxidase (DAAO) substrate specificity through facilitated solvent access.

scientific article published on 15 June 2018

Multi-Level Integration of Environmentally Perturbed Internal Phenotypes Reveals Key Points of Connectivity between Them

scientific article

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

scientific article published on 29 July 2015

Plasma and Serum Metabolite Association Networks: Comparability within and between Studies Using NMR and MS Profiling

scientific article published on 18 May 2017

Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition.

scientific article published on 18 August 2017

Probabilistic Networks of Blood Metabolites in Healthy Subjects As Indicators of Latent Cardiovascular Risk

scientific article published on 08 December 2014

Programmable bacterial catalysis - designing cells for biosynthesis of value-added compounds.

scientific article published on 25 February 2012

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.

scientific article published on 15 August 2016

Pushing the limits of automatic computational protein design: design, expression, and characterization of a large synthetic protein based on a fungal laccase scaffold.

scientific article published on 20 March 2011

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

scientific article (publication date: 2015)

Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story

scientific article

SALARECON connects the Atlantic salmon genome to growth and feed efficiency

scientific article published on 10 June 2022

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles

scientific article published on 23 November 2017

Screening and characterization of novel specific peptides targeting MDA-MB-231 claudin-low breast carcinoma by computer-aided phage display methodologies

scientific article

Simulation and Reconstruction of Metabolite-Metabolite Association Networks Using a Metabolic Dynamic Model and Correlation Based Algorithms

scientific article published on 04 February 2019

SyNDI: synchronous network data integration framework

scientific article published on 06 November 2018

Systems Biology in ELIXIR: modelling in the spotlight

scientific article published on 31 May 2024

Systems-level modeling of mycobacterial metabolism for the identification of new (multi-)drug targets

scientific article

The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation

scientific article published on 04 November 2019

The effect of prebiotic fortified infant formulas on microbiota composition and dynamics in early life

article

Toxicological response of the model fungus Saccharomyces cerevisiae to different concentrations of commercial graphene nanoplatelets

scientific article published on 24 February 2020

Understanding the antimicrobial mechanism of TiO₂-based nanocomposite films in a pathogenic bacterium

scientific article published on 19 February 2014

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity

scientific article published on 28 July 2017

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