List of works - Stephan C Schürer

A Combined Ligand‐ and Structure‐Based Virtual Screening Protocol Identifies Submicromolar PPARγ Partial Agonists ⬇️

scientific article published on January 3, 2011

A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses

scientific article published in 2022

An Overview of the Challenges in Designing, Integrating, and Delivering BARD: A Public Chemical-Biology Resource and Query Portal for Multiple Organizations, Locations, and Disciplines

scientific article

An extension of the BioAssay Ontology to include pharmacokinetic/pharmacodynamic terminology for the enrichment of scientific workflows

scientific article published in 2023

Antidiabetic actions of a non-agonist PPARγ ligand blocking Cdk5-mediated phosphorylation

scientific article

Benzimidazole- and benzoxazole-based inhibitors of Rho kinase

scientific article published on 25 October 2008

Benzothiazoles as Rho-associated kinase (ROCK-II) inhibitors

scientific article published on 03 October 2009

BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results

scientific article

BioAssay ontology annotations facilitate cross-analysis of diverse high-throughput screening data sets

scientific article

CLO: The cell line ontology

scientific article

Chemical interrogation of the neuronal kinome using a primary cell-based screening assay

scientific article

Chroman-3-amides as potent Rho kinase inhibitors

scientific article published on 22 October 2008

Comparison of miniaturized time-resolved fluorescence resonance energy transfer and enzyme-coupled luciferase high-throughput screening assays to discover inhibitors of Rho-kinase II (ROCK-II).

scientific article

Connecting omics signatures of diseases, drugs, and mechanisms of actions with iLINCS

scientific article

DD-01LIGAND- AND STRUCTURE-BASED VIRTUAL SCREENING TO DISCOVER POLYPHARMACOLOGICAL DUAL EGFR AND BRD4 INHIBITORS

scientific article published in November 2014

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data

scientific article published on 13 November 2017

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop

scientific article

Discovery and optimization of indoles and 7-azaindoles as Rho kinase (ROCK) inhibitors (part-I) ⬇️

scientific article published on September 24, 2011

Discovery of Potent and Selective Urea-Based ROCK Inhibitors and Their Effects on Intraocular Pressure in Rats

scientific article published on 05 April 2010

Discovery of a novel submicromolar inhibitor of the lymphoid specific tyrosine phosphatase.

scientific article published on 8 April 2008

Discovery of novel small molecule cell type-specific enhancers of NF-kappaB nuclear translocation.

scientific article published on 25 December 2008

Discovery of potent non-urea inhibitors of soluble epoxide hydrolase

scientific article published on 20 September 2008

Discovery of substituted 4-(pyrazol-4-yl)-phenylbenzodioxane-2-carboxamides as potent and highly selective Rho kinase (ROCK-II) inhibitors.

scientific article published on 04 October 2008

Distinct functional and conformational states of the human lymphoid tyrosine phosphatase catalytic domain can be targeted by choice of the inhibitor chemotype

scientific article

Drug Repositioning in Glioblastoma: A Pathway Perspective

scientific article published on 16 March 2018

Drug and disease signature integration identifies synergistic combinations in glioblastoma

scientific article published in Nature Communications

Drug target ontology to classify and integrate drug discovery data

scientific article

DrugCentral 2018: an update

scientific article published in January 2019

Epigenetic pathways and glioblastoma treatment: insights from signaling cascades

scientific article published on March 2015

Evolving BioAssay Ontology (BAO): modularization, integration and applications

scientific article

FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources

scientific article published on 30 October 2019

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Far away from the lamppost

scientific article published on 11 December 2018

Formalization, annotation and analysis of diverse drug and probe screening assay datasets using the BioAssay Ontology (BAO)

scientific article

GPCR ontology: development and application of a G protein-coupled receptor pharmacology knowledge framework

scientific article published on 29 September 2013

How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM)

scientific article published on 01 January 2019

Identification of N-(quinolin-8-yl)benzenesulfonamides as agents capable of down-regulating NFkappaB activity within two separate high-throughput screens of NFkappaB activation

scientific article

Identification of Small-Molecule Inhibitors of the Colorectal Cancer Oncogene Krüppel-like Factor 5 Expression by Ultrahigh-Throughput Screening ⬇️

scientific article published on September 1, 2011

Identification of a Novel Class of BRD4 Inhibitors by Computational Screening and Binding Simulations.

scientific article published on 21 August 2017

Improving the Utility of the Tox21 Dataset by Deep Metadata Annotations and Constructing Reusable Benchmarked Chemical Reference Signatures

scientific article published on 23 April 2019

Inhibition of Lymphoid Tyrosine Phosphatase by Benzofuran Salicylic Acids ⬇️

scientific article published on December 29, 2010

Kinome-wide activity classification of small molecules by deep learning

scholarly article published 4 January 2019

Knowledge-based characterization of similarity relationships in the human protein-tyrosine phosphatase family for rational inhibitor design

scientific article

LINCS Data Portal 2.0: next generation access point for perturbation-response signatures

scientific article published on 01 January 2020

Large-Scale Computational Screening Identifies First in Class Multitarget Inhibitor of EGFR Kinase and BRD4.

scientific article published on 24 November 2015

Large-scale integration of small molecule-induced genome-wide transcriptional responses, Kinome-wide binding affinities and cell-growth inhibition profiles reveal global trends characterizing systems-level drug action

scientific article

Metadata Standard and Data Exchange Specifications to Describe, Model, and Integrate Complex and Diverse High-Throughput Screening Data from the Library of Integrated Network-based Cellular Signatures (LINCS).

scientific article

Novel Bis-Chalcone Promotes Endoplasmic Reticulum Stress and Glioblastoma Neurosphere Cell Death

scientific article published on 13 March 2019

Novel Kinase Inhibitors by Reshuffling Ligand Functionalities Across the Human Kinome ⬇️

scientific article published on November 20, 2012

OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.

scientific article published on 25 April 2019

Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.

scientific article published on 21 December 2017

Pharos: Collating protein information to shed light on the druggable genome

scientific article

Polypharmacology or Promiscuity? Structural Interactions of Resveratrol With Its Bandwagon of Targets

scholarly article by Uzma Saqib et al published 2018 in Frontiers in Pharmacology

Potent Anti-Diabetic Actions of a Novel Non-Agonist PPARγ Ligand that Blocks Cdk5-Mediated Phosphorylation

Potent inhibitors of Huntingtin protein aggregation in a cell-based assay

scientific article

Selective Targeting of Extracellular Insulin-Degrading Enzyme by Quasi-Irreversible Thiol-Modifying Inhibitors

scientific article published on 23 September 2015

Suppression of TH17 differentiation and autoimmunity by a synthetic ROR ligand

scientific article

Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center.

scientific article published on 19 June 2018

TCRD and Pharos 2021: mining the human proteome for disease biology

scientific article published on 06 November 2020

TIN-X: target importance and novelty explorer

scientific article published on 07 April 2017

Tetrahydroisoquinoline Derivatives As Highly Selective and Potent Rho Kinase Inhibitors ⬇️

scientific article published on August 12, 2010

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations

scientific article published on 24 November 2017

The SmartAPI Ecosystem for Making Web APIs FAIR

scientific article published in proceedings of the iswc 2017 posters & demonstrations and industry tracks

Tyrosine phosphorylation of CARM1 promotes its enzymatic activity and alters its target specificity

scientific article published in 2024

Unexplored therapeutic opportunities in the human genome

scientific article published on 23 March 2018

Unexplored therapeutic opportunities in the human genome.

scientific article published on 23 February 2018

Use of machine learning to identify novel, behaviorally active antagonists of the insect odorant receptor co-receptor (Orco) subunit

scientific article published on 11 March 2019

Using the BioAssay Ontology for analyzing high-throughput screening data

scientific article

piNET: a versatile web platform for downstream analysis and visualization of proteomics data

scientific article published on 29 May 2020

List of works by Stephan C Schürer

A Combined Ligand‐ and Structure‐Based Virtual Screening Protocol Identifies Submicromolar PPARγ Partial Agonists ⬇️

A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses

An Overview of the Challenges in Designing, Integrating, and Delivering BARD: A Public Chemical-Biology Resource and Query Portal for Multiple Organizations, Locations, and Disciplines

An extension of the BioAssay Ontology to include pharmacokinetic/pharmacodynamic terminology for the enrichment of scientific workflows

Antidiabetic actions of a non-agonist PPARγ ligand blocking Cdk5-mediated phosphorylation

Benzimidazole- and benzoxazole-based inhibitors of Rho kinase

Benzothiazoles as Rho-associated kinase (ROCK-II) inhibitors

BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results

BioAssay ontology annotations facilitate cross-analysis of diverse high-throughput screening data sets

CLO: The cell line ontology

Chemical interrogation of the neuronal kinome using a primary cell-based screening assay

Chroman-3-amides as potent Rho kinase inhibitors

Comparison of miniaturized time-resolved fluorescence resonance energy transfer and enzyme-coupled luciferase high-throughput screening assays to discover inhibitors of Rho-kinase II (ROCK-II).

Connecting omics signatures of diseases, drugs, and mechanisms of actions with iLINCS

DD-01LIGAND- AND STRUCTURE-BASED VIRTUAL SCREENING TO DISCOVER POLYPHARMACOLOGICAL DUAL EGFR AND BRD4 INHIBITORS

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop

Discovery and optimization of indoles and 7-azaindoles as Rho kinase (ROCK) inhibitors (part-I) ⬇️

Discovery of Potent and Selective Urea-Based ROCK Inhibitors and Their Effects on Intraocular Pressure in Rats

Discovery of a novel submicromolar inhibitor of the lymphoid specific tyrosine phosphatase.

Discovery of novel small molecule cell type-specific enhancers of NF-kappaB nuclear translocation.

Discovery of potent non-urea inhibitors of soluble epoxide hydrolase

Discovery of substituted 4-(pyrazol-4-yl)-phenylbenzodioxane-2-carboxamides as potent and highly selective Rho kinase (ROCK-II) inhibitors.

Distinct functional and conformational states of the human lymphoid tyrosine phosphatase catalytic domain can be targeted by choice of the inhibitor chemotype

Drug Repositioning in Glioblastoma: A Pathway Perspective

Drug and disease signature integration identifies synergistic combinations in glioblastoma

Drug target ontology to classify and integrate drug discovery data

DrugCentral 2018: an update

Epigenetic pathways and glioblastoma treatment: insights from signaling cascades

Evolving BioAssay Ontology (BAO): modularization, integration and applications

FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Far away from the lamppost

Formalization, annotation and analysis of diverse drug and probe screening assay datasets using the BioAssay Ontology (BAO)

GPCR ontology: development and application of a G protein-coupled receptor pharmacology knowledge framework

How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM)

Identification of N-(quinolin-8-yl)benzenesulfonamides as agents capable of down-regulating NFkappaB activity within two separate high-throughput screens of NFkappaB activation

Identification of Small-Molecule Inhibitors of the Colorectal Cancer Oncogene Krüppel-like Factor 5 Expression by Ultrahigh-Throughput Screening ⬇️

Identification of a Novel Class of BRD4 Inhibitors by Computational Screening and Binding Simulations.

Improving the Utility of the Tox21 Dataset by Deep Metadata Annotations and Constructing Reusable Benchmarked Chemical Reference Signatures

Inhibition of Lymphoid Tyrosine Phosphatase by Benzofuran Salicylic Acids ⬇️

Kinome-wide activity classification of small molecules by deep learning

Knowledge-based characterization of similarity relationships in the human protein-tyrosine phosphatase family for rational inhibitor design

LINCS Data Portal 2.0: next generation access point for perturbation-response signatures

Large-Scale Computational Screening Identifies First in Class Multitarget Inhibitor of EGFR Kinase and BRD4.

Large-scale integration of small molecule-induced genome-wide transcriptional responses, Kinome-wide binding affinities and cell-growth inhibition profiles reveal global trends characterizing systems-level drug action

Metadata Standard and Data Exchange Specifications to Describe, Model, and Integrate Complex and Diverse High-Throughput Screening Data from the Library of Integrated Network-based Cellular Signatures (LINCS).

Novel Bis-Chalcone Promotes Endoplasmic Reticulum Stress and Glioblastoma Neurosphere Cell Death

Novel Kinase Inhibitors by Reshuffling Ligand Functionalities Across the Human Kinome ⬇️

OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.

Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.

Pharos: Collating protein information to shed light on the druggable genome

Polypharmacology or Promiscuity? Structural Interactions of Resveratrol With Its Bandwagon of Targets

Potent Anti-Diabetic Actions of a Novel Non-Agonist PPARγ Ligand that Blocks Cdk5-Mediated Phosphorylation

Potent inhibitors of Huntingtin protein aggregation in a cell-based assay

Selective Targeting of Extracellular Insulin-Degrading Enzyme by Quasi-Irreversible Thiol-Modifying Inhibitors

Suppression of TH17 differentiation and autoimmunity by a synthetic ROR ligand

Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center.

TCRD and Pharos 2021: mining the human proteome for disease biology

TIN-X: target importance and novelty explorer

Tetrahydroisoquinoline Derivatives As Highly Selective and Potent Rho Kinase Inhibitors ⬇️

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations

The SmartAPI Ecosystem for Making Web APIs FAIR

Tyrosine phosphorylation of CARM1 promotes its enzymatic activity and alters its target specificity

Unexplored therapeutic opportunities in the human genome

Unexplored therapeutic opportunities in the human genome.

Use of machine learning to identify novel, behaviorally active antagonists of the insect odorant receptor co-receptor (Orco) subunit

Using the BioAssay Ontology for analyzing high-throughput screening data

piNET: a versatile web platform for downstream analysis and visualization of proteomics data