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List of works by David Berry

A dynamic and complex monochloramine stress response in Escherichia coli revealed by transcriptome analysis

scientific article published on 31 May 2013

A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome

scientific article published on 25 September 2019

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

scientific article published on 16 July 2015

Aberrant gut-microbiota-immune-brain axis development in premature neonates with brain damage

publication published on 03 September 2021

An Economical and Flexible Dual Barcoding, Two-Step PCR Approach for Highly Multiplexed Amplicon Sequencing

scientific article published on 20 May 2021

An automated Raman-based platform for the sorting of live cells by functional properties

scientific article published on 18 March 2019

Anaerobic Sulfur Oxidation Underlies Adaptation of a Chemosynthetic Symbiont to Oxic-Anoxic Interfaces

scientific article published on 26 May 2021

Antioxidative activity and health benefits of anthocyanin-rich fruit juice in healthy volunteers

scientific article published on 04 June 2019

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

scientific article published in 2012

Barcoded primers used in multiplex amplicon pyrosequencing bias amplification

scientific article

Colonization resistance and microbial ecophysiology: using gnotobiotic mouse models and single-cell technology to explore the intestinal jungle ⬇️

scientific article published on June 5, 2013

Comparative transcriptomics of the response of Escherichia coli to the disinfectant monochloramine and to growth conditions inducing monochloramine resistance

scientific article published on 27 July 2010

Cyanate as an energy source for nitrifiers

scientific article

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

scientific article published on 20 May 2014

Effect of growth conditions on inactivation of Escherichia coli with monochloramine

scientific article

Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents

scientific article

Gut microbiota and undigested food constituents modify toxin composition and suppress the genotoxicity of a naturally occurring mixture of Alternaria toxins in vitro

scientific article published on 04 July 2020

High-fat diet alters gut microbiota physiology in mice

scientific article

Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing

scientific article published on 4 March 2013

Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP ⬇️

scientific article published on June 20, 2013

Impact of microfiltration treatment of secondary wastewater effluent on biofouling of reverse osmosis membranes

scientific article

Intestinal Epithelial Cell Tyrosine Kinase 2 Transduces IL-22 Signals To Protect from Acute Colitis

scientific article

Intestinal Microbiota Signatures Associated with Inflammation History in Mice Experiencing Recurring Colitis

scientific article

Intestinal microbiota reduces genotoxic endpoints induced by high-energy protons

scientific article

Intestinal microbiota: a source of novel biomarkers in inflammatory bowel diseases?

scientific article published on February 2013

Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery

scientific article published on 09 January 2014

Microbial nitrogen limitation in the mammalian large intestine

article

Microbial nutrient niches in the gut.

scientific article

Mucosal Biofilms Are an Endoscopic Feature of Irritable Bowel Syndrome and Ulcerative Colitis

scientific article published on 17 June 2021

Mycobacterium avium infections of Acanthamoeba strains: host strain variability, grazing-acquired infections, and altered dynamics of inactivation with monochloramine

scientific article published on 13 August 2010

NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira.

scientific article

Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis

scientific article

Polycyclic aromatic hydrocarbon degradation of phytoplankton-associated Arenibacter spp. and description of Arenibacter algicola sp. nov., an aromatic hydrocarbon-degrading bacterium

scientific article

Publisher Correction: An automated Raman-based platform for the sorting of live cells by functional properties

scientific article published on 01 May 2019

Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization

scientific article published on 09 October 2020

Removal of pharmaceuticals and personal care products during water recycling: microbial community structure and effects of substrate concentration

scientific article

Response of the bacterial community associated with a cosmopolitan marine diatom to crude oil shows a preference for the biodegradation of aromatic hydrocarbons.

scientific article published on 16 July 2015

Role of Bacterial Exopolysaccharides (EPS) in the Fate of the Oil Released during the Deepwater Horizon Oil Spill.

scientific article

Spotlight on how microbes influence their host's behavior

scientific article published on 25 July 2019

Systematic spatial bias in DNA microarray hybridization is caused by probe spot position-dependent variability in lateral diffusion

scientific article

Temporal bacterial community dynamics vary among ulcerative colitis patients after fecal microbiota transplantation.

scientific article published on 24 September 2013

The emerging view of Firmicutes as key fibre degraders in the human gut.

scientific article published on 4 February 2016

The role of gut microbiota, butyrate and proton pump inhibitors in amyotrophic lateral sclerosis: a systematic review

scientific article published on 23 December 2019

Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells

scientific article

Transkingdom interactions between Lactobacilli and hepatic mitochondria attenuate western diet-induced diabetes

scientific article published on 04 January 2021

Type I interferons have opposing effects during the emergence and recovery phases of colitis.

scientific article

Up-close-and-personal with the human microbiome

scientific article published on 15 November 2018

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