List of works by Mathieu Fourment

19 Dubious Ways to Compute the Marginal Likelihood of a Phylogenetic Tree Topology

scientific article published on 01 March 2020

A comparison of common programming languages used in bioinformatics.

scientific article

A random effects branch-site model for detecting episodic diversifying selection.

scientific article published on 13 June 2011

A surrogate function for one-dimensional phylogenetic likelihoods.

scientific article published on 26 September 2017

Accumulating variation at conserved sites in potyvirus genomes is driven by species discovery and affects degenerate primer design

scientific article

African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus

scientific article

Antigenic and molecular characterization of avian influenza A(H9N2) viruses, Bangladesh

scientific article published on January 2013

Avian influenza virus exhibits distinct evolutionary dynamics in wild birds and poultry

scientific article published on 26 June 2015

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

scientific article published on 08 April 2019

Chimpanzee malaria parasites related to Plasmodium ovale in Africa

scientific article

Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals

scientific article published on 27 November 2017

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

scientific article

Escherichia coli ST8196 is a novel, locally evolved, and extensively drug resistant pathogenic lineage within the ST131 clonal complex

scientific article published on 20 July 2020

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics

scientific article published on 18 December 2019

Evidence for persistence of and antiviral resistance and reassortment events in seasonal influenza virus strains circulating in Cambodia

scientific article published on 4 November 2009

Evolution of Influenza B Virus in Kuala Lumpur, Malaysia, between 1995 and 2008.

scientific article

Evolutionary dynamics of the N1 neuraminidases of the main lineages of influenza A viruses

scientific article

Genetic evolution of the neuraminidase of influenza A (H3N2) viruses from 1968 to 2009 and its correspondence to haemagglutinin evolution

scientific article published on 20 June 2012

Genome-scale rates of evolutionary change in bacteria.

scientific article published on 30 November 2016

Identification of a novel lineage of plasmids within phylogenetically diverse subclades of IncHI2-ST1 plasmids

scientific article published on 15 March 2019

Inconsistencies in estimating the age of HIV-1 subtypes due to heterotachy

scientific article

Influenza a virus migration and persistence in North American wild birds

scientific article

Local and relaxed clocks: the best of both worlds

scientific article published on 03 July 2018

Molecular epidemiology of clade 1 influenza A viruses (H5N1), southern Indochina peninsula, 2004-2007.

scientific article

Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data.

scientific article

PATRISTIC: a program for calculating patristic distances and graphically comparing the components of genetic change

scientific article

SWeBLAST: a Sliding Window Web-based BLAST tool for recombinant analysis

scientific article

Seqotron: a user-friendly sequence editor for Mac OS X.

scientific article published on 17 February 2016

Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies

scientific article published on 01 March 2020

The VirusBanker database uses a Java program to allow flexible searching through Bunyaviridae sequences

scientific article

The contrasting phylodynamics of human influenza B viruses.

scientific article

The impact of migratory flyways on the spread of avian influenza virus in North America

scientific article

The recent establishment of North American H10 lineage influenza viruses in Australian wild waterfowl and the evolution of Australian avian influenza viruses

scientific article

The variable codons of H3 influenza A virus haemagglutinin genes.

scientific article

Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis.

scientific article

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