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List of works by Aaron Carass

A Compressed Sensing Approach for MR Tissue Contrast Synthesis

A JOINT REGISTRATION AND SEGMENTATION APPROACH TO SKULL STRIPPING

A RICIAN MIXTURE MODEL CLASSIFICATION ALGORITHM FOR MAGNETIC RESONANCE IMAGES.

scientific article published on January 2009

A framework on surface-based connectivity quantification for the human brain

scientific article

A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction

scientific article

AUTOMATED ANATOMICAL LABELING OF THE CEREBRAL ARTERIES USING BELIEF PROPAGATION.

scientific article

AUTOMATED RELIABLE LABELING OF THE CORTICAL SURFACE.

scientific article

AUTOMATICALLY IDENTIFYING WHITE MATTER TRACTS USING CORTICAL LABELS.

scientific article

An adaptive grid for graph-based segmentation in retinal OCT.

scientific article published on January 2014

Analysis of macular OCT images using deformable registration.

scientific article

Applications of a deep learning method for anti-aliasing and super-resolution in MRI

scientific article published on 24 June 2019

Applying an Open-Source Segmentation Algorithm to Different OCT Devices in Multiple Sclerosis Patients and Healthy Controls: Implications for Clinical Trials

scientific article published on 18 May 2015

Atlas Based Intensity Transformation of Brain MR Images

Author Correction: Why rankings of biomedical image analysis competitions should be interpreted with care

scientific article published in Nature Communications

Automatic Cell Segmentation in Fluorescence Images of Confluent Cell Monolayers Using Multi-object Geometric Deformable Model.

scientific article published on March 2013

Automatic Coronary Wall and Atherosclerotic Plaque Segmentation from 3D Coronary CT Angiography

scientific article published in Scientific Reports

Automatic Method for Thalamus Parcellation Using Multi-modal Feature Classification

article published in 2014

Automatic Sulcal Curve Extraction with MRF Based Shape Prior.

scientific article published on May 2012

Automatic magnetic resonance spinal cord segmentation with topology constraints for variable fields of view

scientific article published on 06 August 2013

Automatic segmentation of microcystic macular edema in OCT.

scientific article published on 15 December 2014

Brain metabolite alterations and cognitive dysfunction in early Huntington's disease

scientific article

Brain ventricle parcellation using a deep neural network: Application to patients with ventriculomegaly.

scientific article published on 24 May 2019

COMPRESSED SENSING BASED INTENSITY NON-UNIFORMITY CORRECTION.

scientific article published on December 2011

COVARIANCE SHRINKING IN ACTIVE SHAPE MODELS WITH APPLICATION TO GYRAL LABELING OF THE CEREBRAL CORTEX.

scientific article published on January 2013

Combined registration and motion correction of longitudinal retinal OCT data

scientific article

Combining Multi-atlas Segmentation with Brain Surface Estimation

scientific article published on February 2016

Consistent cortical reconstruction and multi-atlas brain segmentation.

scientific article

Consistent segmentation using a Rician classifier

scientific article published on 13 December 2011

Cross contrast multi-channel image registration using image synthesis for MR brain images.

scientific article published on 22 October 2016

DEFORMABLE REGISTRATION OF MACULAR OCT USING A-MODE SCAN SIMILARITY.

scientific article published on December 2013

DeepHarmony: A deep learning approach to contrast harmonization across scanner changes

scientific article published on 10 July 2019

Deformation field correction for spatial normalization of PET images

scientific article

Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation

scientific article published on 17 February 2018

Disentangled Representation Learning for OCTA Vessel Segmentation With Limited Training Data

Distance Transforms in Multi Channel MR Image Registration.

scientific article published on March 2011

Effects of Spatial Resolution on Image Registration

scientific article published on February 2016

Erratum to: The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software

scholarly article published in Neuroinformatics

Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis

scientific article published on 19 May 2020

Example Based Lesion Segmentation.

scientific article published on February 2014

FUZZY C-MEANS WITH VARIABLE COMPACTNESS.

scientific article published on January 2008

INTENSITY INHOMOGENEITY CORRECTION OF MACULAR OCT USING N3 AND RETINAL FLATSPACE

scientific article

Information-Based Disentangled Representation Learning for Unsupervised MR Harmonization

Integrating material properties from magnetic resonance elastography into subject-specific computational models for the human brain

Intensity Inhomogeneity Correction of Magnetic Resonance Images using Patches

scientific article published on March 2011

Intensity inhomogeneity correction of SD-OCT data using macular flatspace.

scientific article

Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities

scientific article published on 01 May 2010

LONGITUDINAL INTENSITY NORMALIZATION IN THE PRESENCE OF MULTIPLE SCLEROSIS LESIONS.

scientific article

Landmark Based Shape Analysis for Cerebellar Ataxia Classification and Cerebellar Atrophy Pattern Visualization

scientific article published on February 2016

Longitudinal Analysis of Regional Cerebellum Volumes During Normal Aging

scientific article published on 24 June 2020

Longitudinal Intensity Normalization of Magnetic Resonance Images using Patches

scientific article published on March 2013

Longitudinal Patch-Based Segmentation of Multiple Sclerosis White Matter Lesions

scientific article published on 02 October 2015

Longitudinal changes in cortical thickness associated with normal aging

scientific article

Longitudinal graph-based segmentation of macular OCT using fundus alignment.

scientific article

Longitudinal multiple sclerosis lesion segmentation data resource

scientific article published on 8 April 2017

Longitudinal multiple sclerosis lesion segmentation: Resource and challenge.

scientific article published on 10 January 2017

MAGNETIC RESONANCE IMAGE SYNTHESIS THROUGH PATCH REGRESSION.

scientific article published on December 2013

MR CONTRAST SYNTHESIS FOR LESION SEGMENTATION.

scientific article

MR Slice Profile Estimation by Learning to Match Internal Patch Distributions

MR image synthesis by contrast learning on neighborhood ensembles

scientific article

MR to CT Registration of Brains using Image Synthesis

scientific article published on March 2014

MRBrainS Challenge: Online Evaluation Framework for Brain Image Segmentation in 3T MRI Scans

scientific article

Magnetic Resonance Image Example-Based Contrast Synthesis.

scientific article published on 16 September 2013

Microcystic macular edema detection in retina OCT images

Multi-Output Decision Trees for Lesion Segmentation in Multiple Sclerosis.

scientific article published on February 2015

Multiple-object geometric deformable model for segmentation of macular OCT

scientific article published on 04 March 2014

Multiple-object geometric deformable model for segmentation of macular OCT: errata

PATCH BASED INTENSITY NORMALIZATION OF BRAIN MR IMAGES.

scientific article published on December 2013

PET attenuation correction using synthetic CT from ultrashort echo-time MR imaging.

scientific article

Preoperative Mapping of the Supplementary Motor Area in Patients with Brain Tumor Using Resting-State fMRI with Seed-Based Analysis

scientific article published on 12 July 2018

Pulse Sequence based Multi-acquisition MR Intensity Normalization

scientific article published on March 2013

Quality Assurance using Outlier Detection on an Automatic Segmentation Method for the Cerebellar Peduncles.

scientific article published on February 2016

Random forest regression for magnetic resonance image synthesis

scientific article published on 31 August 2016

Reconstruction of the human cerebral cortex robust to white matter lesions: method and validation

scientific article

Retinal layer parcellation of optical coherence tomography images: Data resource for multiple sclerosis and healthy controls

scientific article published on 28 December 2018

Retinal layer segmentation of macular OCT images using boundary classification

scientific article published on 14 June 2013

Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling.

scientific article published on 27 February 2016

Segmentation of Thalamus from MR images via Task-Driven Dictionary Learning.

scientific article published on February 2016

Segmentation of microcystic macular edema in Cirrus OCT scans with an exploratory longitudinal study

scientific article

Segmentation of retinal OCT images using a random forest classifier

scientific article published on March 2013

Segmentation of retinal OCT images using a random forest classifier

Self Super-resolution for Magnetic Resonance Images

scientific article published on 02 October 2016

Simple paradigm for extra-cerebral tissue removal: algorithm and analysis.

scientific article

Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction.

scientific article published on 23 February 2012

Simultaneous Segmentation of Retinal Surfaces and Microcystic Macular Edema in SDOCT Volumes.

scientific article published on February 2016

Subject-Specific Sparse Dictionary Learning for Atlas-Based Brain MRI Segmentation.

scientific article

Synthesizing MR Contrast and Resolution through a Patch Matching Technique.

scientific article

System for integrated neuroimaging analysis and processing of structure.

scientific article published in January 2013

TOPOLOGY PRESERVING AUTOMATIC SEGMENTATION OF THE SPINAL CORD IN MAGNETIC RESONANCE IMAGES

scientific article published on March 2011

Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation

scientific article

Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors.

scientific article published on February 2016

Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort

scientific article published on 29 June 2017

The Java Image Science Toolkit (JIST) for rapid prototyping and publishing of neuroimaging software

scientific article

Topology preserving brain tissue segmentation using graph cuts

Towards Topological Correct Segmentation of Macular OCT from Cascaded FCNs

scientific article published on 09 September 2017

Tree-Encoded Conditional Random Fields for Image Synthesis

Unsupervised MR-to-CT Synthesis using Structure-Constrained CycleGAN

scientific article published on 11 August 2020

Using image synthesis for multi-channel registration of different image modalities

scientific article published in February 2015

Voxel Based Morphometry in Optical Coherence Tomography: Validation & Core Findings

scientific article published on February 2016

Voxel-Wise Displacement as Independent Features in Classification of Multiple Sclerosis

scientific article published on March 2013

Why rankings of biomedical image analysis competitions should be interpreted with care ⬇️

scientific article published in Nature Communications

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