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List of works by Shang-Te Danny Hsu

1H, 13C and 15N assignments of a camelid nanobody directed against human α-synuclein

article

1H, 15N and 13C assignments of domain 5 of Dictyostelium discoideum gelation factor (ABP-120) in its native and 8M urea-denatured states.

scientific article published on 18 December 2008

1H, 15N and 13C assignments of the dimeric ribosome binding domain of trigger factor from Escherichia coli

scientific article

1H, 15N and 13C assignments of yellow fluorescent protein (YFP) Venus

scientific article published on 13 January 2009

A G-Rich Sequence within the c-kit Oncogene Promoter Forms a Parallel G-Quadruplex Having Asymmetric G-Tetrad Dynamics

scientific article

A High-Throughput Interbacterial Competition Screen Identifies ClpAP in Enhancing Recipient Susceptibility to Type VI Secretion System-Mediated Attack by Agrobacterium tumefaciens

scientific article published on 01 January 2019

A Multivalent Marine Lectin from Crenomytilus grayanus Possesses Anti-cancer Activity through Recognizing Globotriose Gb3

scientific article

A Nanobody Binding to Non-Amyloidogenic Regions of the Protein Human Lysozyme Enhances Partial Unfolding but Inhibits Amyloid Fibril Formation

scientific article

A Natively Monomeric Deubiquitinase UCH-L1 Forms Highly Dynamic but Defined Metastable Oligomeric Folding Intermediates

A molten globule-to-ordered structure transition of Drosophila melanogaster crammer is required for its ability to inhibit cathepsin

scientific article published on March 2012

A nonpeptidic reverse turn that promotes parallel sheet structure stabilized by C-H...O hydrogen bonds in a cyclopropane gamma-peptide.

scientific article published in January 2008

A novel transition pathway of ligand-induced topological conversion from hybrid forms to parallel forms of human telomeric G-quadruplexes.

scientific article published on 14 March 2016

A small molecule that disrupts G-quadruplex DNA structure and enhances gene expression

scientific article

Accurate Random Coil Chemical Shifts from an Analysis of Loop Regions in Native States of Proteins

article

Atomic insight into the CD4 binding-induced conformational changes in HIV-1 gp120.

scientific article

Backbone 1H, 13C and 15N assignments of YibK and avariant containing a unique cysteine residue at C-terminus in 8 M urea-denatured states [corrected].

scientific article published on 14 July 2013

Backbone NMR assignments of a topologically knotted protein in urea-denatured state

scientific article published on 3 July 2013

Backbone assignments of the 26 kDa neuron-specific ubiquitin carboxyl-terminal hydrolase L1 (UCH-L1).

scientific article

Chaperone proteostasis in Parkinson's disease: stabilization of the Hsp70/alpha-synuclein complex by Hip

scientific article

Characterization and Structural Analyses of Nonspecific Lipid Transfer Protein 1 from Mung Bean

scientific article published in 2005

Characterization and structural analyses of nonspecific lipid transfer protein 1 from mung bean.

scientific article

Comparative analysis of the folding dynamics and kinetics of an engineered knotted protein and its variants derived from HP0242 of Helicobacter pylori

scientific article published on 20 August 2015

Comparative folding analyses of unknotted versus trefoil-knotted ornithine transcarbamylases suggest stabilizing effects of protein knots

scientific article published on 21 June 2018

Conformational transition of a hairpin structure to G-quadruplex within the WNT1 gene promoter

scientific article published on 24 December 2014

Converging experimental and computational views of the knotting mechanism of a small knotted protein

scientific article published on 01 April 2021

Cryo-EM analysis of a feline coronavirus spike protein reveals a unique structure and camouflaging glycans

scientific article published on 03 January 2020

Crystal structure of vaccinia viral A27 protein reveals a novel structure critical for its function and complex formation with A26 protein

scientific article

D614G mutation in the SARS-CoV-2 spike protein enhances viral fitness by desensitizing it to temperature-dependent denaturation

scientific article published on 24 September 2021

Diarylethynyl amides that recognize the parallel conformation of genomic promoter DNA G-quadruplexes

scientific article published on November 2008

Dissecting the Structure-Activity Relationship of Galectin-Ligand Interactions

scientific article published on 29 January 2018

Dual thio-digalactoside-binding modes of human galectins as the structural basis for the design of potent and selective inhibitors

scientific article published on 15 July 2016

Entropic stabilization of a deubiquitinase provides conformational plasticity and slow unfolding kinetics beneficial for functioning on the proteasome

scientific article published on 24 March 2017

Entropy calculation of HIV-1 Env gp120, its receptor CD4, and their complex: an analysis of configurational entropy changes upon complexation

scientific article published on 15 October 2004

Erratum to: Backbone 1H, 13C and 15N assignments of YibK and a variant containing a unique cysteine residue at C-terminus in 8 M urea-denatured states

scholarly article published in Biomolecular NMR Assignments

Evolution rescues folding of human immunodeficiency virus-1 envelope glycoprotein GP120 lacking a conserved disulfide bond

scientific article

Experimental free energy surfaces reveal the mechanisms of maintenance of protein solubility

scientific article

Familial Mutations and Post-translational Modifications of UCH-L1 in Parkinson's Disease and Neurodegenerative Disorders.

scientific article published on 17 February 2016

Folding analysis of the most complex Stevedore's protein knot

scientific article

Folding study of Venus reveals a strong ion dependence of its yellow fluorescence under mildly acidic conditions

scientific article

Functional dynamics of proteins

scientific article published on 31 December 2012

How Native and Non-Native Cations Bind and Modulate the Properties of GTP/ATP

Isolation and structural characterization of epilancin 15X, a novel lantibiotic from a clinical strain of Staphylococcus epidermidis

scientific article published in March 2005

Key Residues of Outer Membrane Protein OprI Involved in Hexamer Formation and Bacterial Susceptibility to Cationic Antimicrobial Peptides

scientific article

Lactose Binding Induces Opposing Dynamics Changes in Human Galectins Revealed by NMR-Based Hydrogen-Deuterium Exchange

scientific article published on 16 August 2017

Local cooperativity in an amyloidogenic state of human lysozyme observed at atomic resolution

scientific article

Mapping the targeted membrane pore formation mechanism by solution NMR: the nisin Z and lipid II interaction in SDS micelles

scientific article

Moenomycin Biosynthesis: Structure and Mechanism of Action of the Prenyltransferase MoeN5.

scientific article

NMR assignments of PI3-SH3 domain aided by protonless NMR spectroscopy

scientific article published on 6 July 2013

NMR assignments of a hypothetical pseudo-knotted protein HP0242 from Helicobacter pylori

scientific article

NMR assignments of the C-terminal domain of human galectin-8.

scientific article

NMR assignments of the peptidyl-prolyl cis-trans isomerase domain of trigger factor from E. coli

scientific article

NMR study of mersacidin and lipid II interaction in dodecylphosphocholine micelles. Conformational changes are a key to antimicrobial activity

scientific article (publication date: 11 April 2003)

Nucleotide contributions to the structural integrity and DNA replication initiation activity of noncoding y RNA.

scientific article published on 5 September 2014

Probing Side-Chain Dynamics of a Ribosome-Bound Nascent Chain Using Methyl NMR Spectroscopy

article

Probing ribosome-nascent chain complexes produced in vivo by NMR spectroscopy

scientific article

Protein knots provide mechano-resilience to an AAA+ protease-mediated proteolysis with profound ATP energy expenses

scientific article published on 20 November 2019

Protein knotting through concatenation significantly reduces folding stability

scientific article (publication date: 16 December 2016)

Random-Coil Behavior of Chemically Denatured Topologically Knotted Proteins Revealed by Small-Angle X-ray Scattering

Residue-specific annotation of disorder-to-order transition and cathepsin inhibition of a propeptide-like crammer from D. melanogaster

scientific article

Self-assembly of MinE on the membrane underlies formation of the MinE ring to sustain function of the Escherichia coli Min system

scientific article

Site-specific solid-state NMR studies of "trigger factor" in complex with the large ribosomal subunit 50S.

scientific article published on 5 February 2015

Small molecule-mediated inhibition of translation by targeting a native RNA G-quadruplex

scientific article

Soluble Siglec-14 glycan-recognition protein is generated by alternative splicing and suppresses myeloid inflammatory responses

scientific article published in Journal of Biological Chemistry

Solution structure and tandem DNA recognition of the C-terminal effector domain of PmrA from Klebsiella pneumoniae

scientific article

Structural Motifs of Lipid II-Binding Lantibiotics as a Blueprint for Novel Antibiotics

article

Structural basis of sodium-potassium exchange of a human telomeric DNA quadruplex without topological conversion

scientific article published on 29 January 2014

Structural insight into the ZFAND1–p97 interaction involved in stress granule clearance

scientific article published in 2024

Structure and dynamics of a ribosome-bound nascent chain by NMR spectroscopy

scholarly article

Structure and properties of a complex of α-synuclein and a single-domain camelid antibody

scientific article

Structure, dynamics and folding of an immunoglobulin domain of the gelation factor (ABP-120) from Dictyostelium discoideum

scientific article published on 10 March 2009

Structure, function and inhibition of ent-kaurene synthase from Bradyrhizobium japonicum

scientific article

The Effect of Parkinson's-Disease-Associated Mutations on the Deubiquitinating Enzyme UCH-L1

article

The Knotted Protein UCH-L1 Exhibits Partially Unfolded Forms under Native Conditions that Share Common Structural Features with Its Kinetic Folding Intermediates

scientific article published on 8 April 2016

The extremely slow-exchanging core and acid-denatured state of green fluorescent protein

scientific article

The folding, stability and conformational dynamics of beta-barrel fluorescent proteins

scientific article

The nisin-lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics

scientific article

The solution structure of [d(CGC)r(amamam)d(TTTGCG)]2

scientific article published on November 1, 2001

The solution structure of the AppA BLUF domain: insight into the mechanism of light-induced signaling

scientific article published in January 2006

Topologically knotted deubiquitinases exhibit unprecedented mechanostability to withstand the proteolysis by an AAA+ protease.

scientific article

Towards multiparametric fluorescent imaging of amyloid formation: studies of a YFP model of alpha-synuclein aggregation

scientific article published on 3 November 2009

Transient tertiary structure formation within the ribosome exit port

scientific article

Unfolding Kinetics of Human Telomeric G-Quadruplexes Studied by NMR Spectroscopy

Unraveling the folding mechanism of the smallest knotted protein, MJ0366.

scientific article

Untying a Knotted SPOUT RNA Methyltransferase by Circular Permutation Results in a Domain-Swapped Dimer

scientific article published on 16 May 2019

Untying a Protein Knot by Circular Permutation

scientific article published on 09 January 2019

Use of protonless NMR spectroscopy to alleviate the loss of information resulting from exchange-broadening.

scientific article published in June 2009

¹H, ¹³C and ¹⁵N resonance assignments of human muscle acylphosphatase

scientific article

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