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List of works by John L. Williams

1D-IEF analysis of BoLA class I expression using allo-antisera reveals additional complexity

scientific article published on 01 December 1993

A 2cM genome-wide scan of European Holstein cattle affected by classical BSE.

scientific article

A 5× genome coverage bovine BAC library: production, characterization, and distribution

article

A Gene Expression Atlas of the Domestic Water Buffalo (Bubalus bubalis)

scientific article published on 24 July 2019

A bovine whole-genome radiation hybrid panel and outline map

scientific article published on 01 August 2002

A comparative map of bovine chromosome 19 based on a combination of mapping on a bacterial artificial chromosome scaffold map, a whole genome radiation hybrid panel and the human draft sequence

scientific article published on 01 January 2003

A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds.

scientific article

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions

scientific article published on 03 July 2019

A high proportion of bovine blastocysts produced in vitro are mixoploid

scientific article published on 01 June 1999

A higher resolution radiation hybrid map of bovine chromosome 13

scientific article published on March 2002

A luteinizing hormone receptor intronic variant is significantly associated with decreased risk of Alzheimer's disease in males carrying an apolipoprotein E epsilon4 allele

scientific article

A major genetic component of BSE susceptibility

scientific article published on 2 October 2006

A medium-density genetic linkage map of the bovine genome.

scientific article published in January 1997

A new mutation in the coding region of the bovine leptin gene associated with feed intake

scientific article published on 01 October 2003

A physical map of the bovine genome

scientific article published in January 2007

A second generation radiation hybrid map to aid the assembly of the bovine genome sequence

scientific article published on 6 November 2006

AffyPipe: an open-source pipeline for Affymetrix Axiom genotyping workflow.

scientific article published on 15 July 2014

Alloreactive T-cell recognition of bovine major histocompatibility complex class II products defined by one-dimensional isoelectric focusing

scientific article published on 01 January 1992

Altered expression of class I major histocompatibility antigens on bovine cells infected with the protozoan parasite Theileria annulata

scientific article published on 01 March 1996

An advanced sheep (Ovis aries, 2n = 54) cytogenetic map and assignment of 88 new autosomal loci by fluorescence in situ hybridization and R-banding.

scientific article

An alternative experimental case-control design for genetic association studies on bovine mastitis.

scientific article

An assessment of population structure in eight breeds of cattle using a whole genome SNP panel

article

An expanded comparative map of bovine chromosome 27 targeting dairy form QTL regions

scientific article

An extended river buffalo (Bubalus bubalis, 2n = 50) cytogenetic map: assignment of 68 autosomal loci by FISH-mapping and R-banding and comparison with human chromosomes

scientific article published on 26 July 2008

Analysis of Gene Expression in White Blood Cells of Cattle Orally Challenged with Bovine Amyloidotic Spongiform Encephalopathy

article

Analysis of copy number variations in Holstein-Friesian cow genomes based on whole-genome sequence data.

scientific article

Analysis of runs of homozygosity and their relationship with inbreeding in five cattle breeds farmed in Italy

scientific article published on 22 December 2014

Annotation of 390 bovine miRNA genes by sequence similarity with other species

scientific article

Assessing SNP markers for assigning individuals to cattle populations.

scientific article published on 11 November 2008

Assessment of AFLP marker behaviour in enriching STS radiation hybrid maps.

scientific article

Assessment of MDA efficiency for genotyping using cloned embryo biopsies.

scientific article published on 12 September 2012

Assignment of the PRPH gene to bovine chromosome 5q1.4 by FISH and confirmation by RH mapping

scientific article

Assignment of the bovine C10orf2 gene to bovine 26q13-->q21 by fluorescence in situ hybridization and confirmation by radiation hybrid mapping

scientific article published on 01 January 2002

Assignment of the bovine TYK2 and PDE4A genes to bovine chromosome 7q15 by fluorescence in situ hybridization and radiation hybrid mapping.

scientific article

Association of selected SNP with carcass and taste panel assessed meat quality traits in a commercial population of Aberdeen Angus-sired beef cattle

scientific article published on 25 June 2009

Associations between single nucleotide polymorphisms in multiple candidate genes and carcass and meat quality traits in a commercial Angus-cross population

scientific article

Associations between the 11-bp deletion in the myostatin gene and carcass quality in Angus-sired cattle

scientific article published on 24 September 2008

Biochemically defined polymorphism of bovine MHC class II antigens

scientific article published on 01 January 1989

BoLA-DR peptide binding pockets are fundamental for foot-and-mouth disease virus vaccine design in cattle

scientific article published on 13 October 2009

Bovine microsatellite loci are highly conserved in red deer (Cervus elaphus), sika deer (Cervus nippon) and Soay sheep (Ovis aries)

scientific article published on 01 August 1998

Breed relationships and definition in British cattle: a genetic analysis

scientific article published on 01 December 2004

Characterization and chromosome localization of a processed pseudogene related to the bovine laminin receptor gene family

scientific article published in January 2004

Characterization of a 320-kb region containing the HEXA gene on bovine chromosome 10 and analysis of its association with BSE susceptibility.

scientific article

Characterization of bovine FAS-associated death domain gene

scientific article published on 01 February 2005

Chromosomal mapping and quantitative analysis of estrogen-related receptor alpha-1, estrogen receptors alpha and beta and progesterone receptor in the bovine mammary gland.

scientific article published in June 2005

Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity

scientific article published in Nature Communications

Cloning and characterization of an immunoglobulin A Fc receptor from cattle.

scientific article published in February 2004

Cloning and radiation hybrid mapping of bovine toll-like receptor-4 (TLR-4) signaling molecules

scientific article published on 18 April 2006

Colostrum source and passive immunity transfer in dairy bull calves

scientific article published in 2021

Combinatorial Discriminant Analysis Applied to RNAseq Data Reveals a Set of 10 Transcripts as Signatures of Exposure of Cattle to Mycobacterium avium subsp. paratuberculosis

scientific article published on 05 February 2020

Comparative mapping of bovine chromosome 27 with human chromosome 8 near a dairy form QTL in cattle

scientific article

Comparative mapping of the POLG gene to cattle chromosome 21q17-->q22 by FISH and confirmation by RH mapping

scientific article published on 01 January 2002

Comparative mapping of the fragile histidine triad (FHIT) gene in cattle, river buffalo, sheep and goat by FISH and assignment to BTA22 by RH-mapping: a comparison with HSA3.

scientific article published in August 2005

Comparative sequence alignment reveals River Buffalo genomic structural differences compared with cattle

scientific article published on 06 March 2018

Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo ( Bubalus bubalis )

scientific article published on 07 February 2019

Consistency statistics and genetic parameters for taste panel assessed meat quality traits and their relationship with carcass quality traits in a commercial population of Angus-sired beef cattle

scientific article published on 01 January 2010

Construction of a normalized Bos taurus and Bos indicus macrophage-specific cDNA library

scientific article

Construction of bovine whole-genome radiation hybrid and linkage maps using high-throughput genotyping.

scientific article

Cosmid-derived markers anchoring the bovine genetic map to the physical map

scientific article published in January 1997

De novo assembly of haplotype-resolved genomes with trio binning

article

Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis).

scientific article published on 5 October 2017

Detection of quantitative trait loci for meat quality traits in cattle

scientific article published on 01 February 2008

Differentiation of European cattle by AFLP fingerprinting

scientific article

Discovery, characterization and validation of single nucleotide polymorphisms within 206 bovine genes that may be considered as candidate genes for beef production and quality

article

Discriminating among cattle breeds using genetic markers

scientific article published on 01 June 1999

Distinctive gene expression patterns and imprinting signatures revealed in reciprocal crosses between cattle sub-species

scientific article published on 03 June 2021

Distribution of ncRNAs expression across hypothalamic-pituitary-gonadal axis in Capra hircus.

scientific article

Dwarfism in Dexter cattle is not caused by the mutations in FGFR3 responsible for achondroplasia in humans

scientific article published in February 1997

Effects of the compact mutant myostatin allele Mstn (Cmpt-dl1Abc) introgressed into a high growth mouse line on skeletal muscle cellularity

scientific article published in July 2005

Elucidating the genetic basis of an oligogenic birth defect using whole genome sequence data in a non-model organism, Bubalus bubalis

scientific article

Expression of genes involved in the T cell signalling pathway in circulating immune cells of cattle 24 months following oral challenge with Bovine Amyloidotic Spongiform Encephalopathy (BASE).

scientific article published on 9 May 2015

Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C

scientific article published on 28 April 2021

Fine-mapping QTL for mastitis resistance on BTA9 in three Nordic red cattle breeds.

scientific article published on 06 May 2008

Gene Expression in the Medulla Following Oral Infection of Cattle with Bovine Spongiform Encephalopathy ⬇️

scientific article published on January 1, 2011

Genetic effects on coat colour in cattle: dilution of eumelanin and phaeomelanin pigments in an F2-Backcross Charolais x Holstein population

scientific article

Genetic loci involved in antibody response to Mycobacterium avium ssp. paratuberculosis in cattle

scientific article

Genetic relationships among European cattle breeds

scientific article published on 01 August 1998

Genetic variation in the bovine myostatin gene in UK beef cattle: allele frequencies and haplotype analysis in the South Devon

scientific article published in October 2000

Genetic variation within the Hereford breed of cattle

scientific article published on 01 June 1998

Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50).

scientific article published in September 2017

Genome wide analysis of fertility and production traits in Italian Holstein cattle

scientific article

Genome-Wide Epigenetic Characterization of Tissues from Three Germ Layers Isolated from Sheep Fetuses.

scientific article published on 4 September 2017

Genome-wide analysis of DNA methylation in hypothalamus and ovary of Capra hircus

scientific article published on 23 June 2017

Genome-wide scan identifies loci associated with classical BSE occurrence

scientific article

Genome-wide search for markers associated with bovine spongiform encephalopathy

scientific article

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds

scientific article

Genomic organization, comparative analysis, and genetic polymorphisms of the bovine and ovine prion Doppel genes (PRND)

article

Genomic structural differences between cattle and River Buffalo identified through comparative genomic and transcriptomic analysis.

scientific article published on 10 May 2018

Genomic study of the response of chicken to highly pathogenic avian influenza virus. ⬇️

scientific article

Genotype by region and season interactions on weaning weight in United States Angus cattle

scientific article published on 14 May 2012

Geographic distribution of haplotype diversity at the bovine casein locus.

scientific article published on March 2004

Haplotype diversity of the myostatin gene among beef cattle breeds

scientific article

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

scientific article published on 29 April 2020

Identification of QTL with effects on fatty acid composition of meat in a Charolais x Holstein cross population.

scientific article published on 21 March 2010

Identification of additional loci associated with antibody response to Mycobacterium avium ssp. Paratuberculosis in cattle by GSEA-SNP analysis.

scientific article published on September 2017

Identification of polymorphisms in the malic enzyme 1, NADP(+)-dependent, cytosolic and nuclear receptor subfamily 0, group B, member 2 genes and their associations with meat and carcass quality traits in commercial Angus cattle

scientific article published on 07 June 2011

Identification of quantitative trait loci affecting cattle temperament

scientific article published on 09 September 2008

Inbreeding and purging at the genomic Level: the Chillingham cattle reveal extensive, non-random SNP heterozygosity.

scientific article published on 11 November 2015

Information content in genome-wide scans: concordance between patterns of genetic differentiation and linkage mapping associations

scientific article

Integrative analysis of methylomic and transcriptomic data in fetal sheep muscle tissues in response to maternal diet during pregnancy

scientific article published on 6 February 2018

Investigation of the genetic architecture of a bone carcass weight QTL on BTA6.

scientific article published on 27 February 2012

Johne's disease in cattle: an in vitro model to study early response to infection of Mycobacterium avium subsp. paratuberculosis using RNA-seq

scientific article published on 5 October 2017

Joint analysis of quantitative trait loci for clinical mastitis and somatic cell score on five chromosomes in three Nordic dairy cattle breeds

scientific article published in November 2007

Landscape of copy number variations in Bos taurus: individual - and inter-breed variability.

scientific article published on 29 May 2018

Mapping and SNP analysis of bovine candidate genes for meat and carcass quality

scientific article

Mapping and transcription profiling of CASP1, 3, 6, 7 and 8 in relation to caspase activity in the bovine cumulus-oocyte complex

scientific article

Mapping of multiple quantitative trait loci affecting bovine spongiform encephalopathy.

scientific article published on August 2004

Mapping of the ATP11B gene and refined localization of the SOX2 and FXR1 genes to BTA1q33.

scientific article

Mapping of the bovine homologue of the human chromosome 14 open reading frame 4 (C14orf4) gene to BTA10q36.

scientific article

Mapping the bovine factor H gene to chromosome 16 by SSCP analysis.

scientific article published in January 1997

Mapping two bovine marker loci, IDVGA66 (D16S34) and IDVGA76 (D14S35) by SSCP.

scientific article published in December 1996

Marker-assisted introgression of the Compact mutant myostatin allele MstnCmpt-dl1Abc into a mouse line with extreme growth effects on body composition and muscularity

scientific article published on 01 December 2004

Meta-analysis of two genome-wide association studies of bovine paratuberculosis

scientific article (publication date: 2012)

Microarray analysis in caudal medulla of cattle orally challenged with bovine spongiform encephalopathy.

scientific article published on 25 October 2011

Microarray analysis of differentially expressed genes from Peyer's patches of cattle orally challenged with bovine spongiform encephalopathy.

scientific article published in January 2009

Mining the bovine genome with the "Bovine SNP Retriever".

scientific article

Molecular cloning, expression and radiation hybrid mapping of the bovine deiodinase type II (DIO2) and deiodinase type III (DIO3) genes.

scientific article published in June 2005

Molecular tools and analytical approaches for the characterization of farm animal genetic diversity.

scientific article published on 04 January 2012

Natural killer cell receptors in cattle: a bovine killer cell immunoglobulin-like receptor multigene family contains members with divergent signaling motifs

scientific article published on 01 April 2003

New Insights on Water Buffalo Genomic Diversity and Post-Domestication Migration Routes From Medium Density SNP Chip Data

scientific article published on 2 March 2018

New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes

scientific article published on 19 December 2019

PCR-RFLP genotyping protocol for chicken Mx gene G/A polymorphism associated with the S631N mutation.

scientific article

PRNP haplotype associated with classical BSE incidence in European Holstein cattle

scientific article

Phenotypic and genotypic background underlying variations in fatty acid composition and sensory parameters in European bovine breeds

scientific article published on 15 April 2014

Polymorphism analysis of the prion gene in BSE-affected and unaffected cattle

article

Polymorphisms of the prion protein gene coding region in born-after-the-reinforced-ban (BARB) bovine spongiform encephalopathy cattle in Great Britain

scientific article published on 01 April 2007

Production of alloantisera against class II bovine lymphocyte antigens (BoLA) by cross-immunization between class I matched cattle ⬇️

scientific article published on 01 January 1991

Profiling bovine blastocyst microRNAs using deep sequencing

scientific article

Quantitative Trait Loci Associated with the Immune Response to a Bovine Respiratory Syncytial Virus Vaccine ⬇️

scientific article published on March 15, 2012

Quantitative evaluation of genetic and environmental parameters determining antibody response induced by vaccination against bovine respiratory syncytial virus

scientific article published on 9 December 2005

Quantitative trait loci for variation in immune response to a Foot-and-Mouth Disease virus peptide ⬇️

scientific article published on December 7, 2010

RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

scientific article published on 27 January 2016

RNA-sequence analysis of gene expression from honeybees (Apis mellifera) infected with Nosema ceranae

scientific article

Radiation hybrid mapping of all 10 characterized bovine Toll-like receptors

scientific article

Relationship between collagen characteristics, lipid content and raw and cooked texture of meat from young bulls of fifteen European breeds

scientific article published on 09 September 2010

Relationships between Podolic cattle breeds assessed by single nucleotide polymorphisms (SNPs) genotyping.

scientific article

Response of the goat mammary gland to infection with Staphylococcus aureus revealed by gene expression profiling in milk somatic and white blood cells

scientific article

Responses of Bovine Innate Immunity to Mycobacterium avium subsp. paratuberculosis Infection Revealed by Changes in Gene Expression and Levels of MicroRNA.

scientific article

Search for quantitative trait loci affecting growth and carcass traits in a cross population of beef and dairy cattle.

scientific article published on 12 September 2008

Searching new signals for production traits through gene-based association analysis in three Italian cattle breeds.

scientific article published on 22 May 2015

Sequence variation in the bovine and ovine PRNP genes

scientific article published on 01 June 2003

Sequencing of a novel cDNA and mapping to bovine chromosome 3 by single-strand conformation polymorphism (SSCP).

scientific article published in December 1996

Sequencing of a novel cDNA and mapping to bovine chromosome 7 by denaturing gradient gel electrophoresis

scientific article published in October 1996

Sequencing, chromosomal mapping, and functional characterization of bovine FLICE-like inhibitory protein (FLIP)

scientific article published on 01 January 2006

Signatures of selection? Patterns of microsatellite diversity on a chromosome containing a selected locus

scientific article published on 01 May 2003

Study of whole genome linkage disequilibrium patterns of Iranian water buffalo breeds using the Axiom Buffalo Genotyping 90K Array

scientific article published on 31 May 2019

Susceptibility of different chicken lines to H7N1 highly pathogenic avian influenza virus and the role of Mx gene polymorphism coding amino acid position 631.

scientific article published on 23 August 2008

Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events

scientific article published in April 2018

Synergies between assisted reproduction technologies and functional genomics

scientific article

Testing for the presence of previously identified QTL for milk production traits in new populations

scientific article published on 01 December 2000

The bovine cocaine and amphetamine-regulated transcript locus: gene characterization and SNP discovery

scientific article published in February 2005

The effects of a mutation in the myostatin gene on meat and carcass quality

scientific article published on 18 April 2009

The genetic background of clinical mastitis in Holstein-Friesian cattle

scientific article published on 05 March 2019

The genome sequence of taurine cattle: a window to ruminant biology and evolution

scientific article

The other side of comparative genomics: genes with no orthologs between the cow and other mammalian species

scientific article

The use of marker-assisted selection in animal breeding and biotechnology.

scientific article

Three bovine chromosome 15 microsatellite markers

scientific article published on 01 April 1995

Traceability of four European Protected Geographic Indication (PGI) beef products using Single Nucleotide Polymorphisms (SNP) and Bayesian statistics

scientific article published on 28 May 2008

Transcriptional analysis of liver from chickens with fast (meat bird), moderate (F1 layer x meat bird cross) and low (layer bird) growth potential

scientific article published on 2 May 2018

Transcriptome analysis of the medulla tissue from cattle in response to bovine spongiform encephalopathy using digital gene expression tag profiling.

scientific article

Transfection, expression, and DNA sequence of a gene encoding a BoLA-A11 antigen.

scientific article published in January 1995

Understanding the effects of the bovine POLLED variants

scientific article published on 30 January 2020

Variation in the Early Host-Pathogen Interaction of Bovine Macrophages with Divergent Mycobacterium bovis Strains in the United Kingdom

scientific article published on 20 December 2017

Verification of the identity of bovine semen using DNA microsatellite markers

scientific article published on 01 April 1997

Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication

scientific article published on 21 September 2020

Whole genome linkage disequilibrium maps in cattle

scientific article

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