List of works - Lukáš Žídek

Conformational Entropy from SRLS Analysis of (15)N-H Relaxation in Proteins: Application to Pheromone Binding to MUP-I in the 283-308 K Temperature Range

scientific article

Conformational dynamics and antigenicity in the disordered malaria antigen merozoite surface protein 2

scientific article

Cooperation between subunits is essential for high-affinity binding of N-acetyl-D-hexosamines to dimeric soluble and dimeric cellular forms of human CD69

scientific article published on 01 May 2010

Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c.

scientific article published on 23 July 2013

Exploring the Structure of a DNA Hairpin with the Help of NMR Spin−Spin Coupling Constants: An Experimental and Quantum Chemical Investigation

article by Vladimír Sychrovský et al published October 2002 in Journal of Physical Chemistry

Hydroperoxidic inhibitor of horse liver alcohol dehydrogenase activity, tightly bound to the enzyme-NAD+ complex, characteristically degrades the coenzyme

scientific article published on January 1, 1992

Multiple recognition motifs in nucleoporin Nup159 provide a stable and rigid Nup159-Dyn2 assembly

scientific article published on 8 December 2012

NMR assignment of intrinsically disordered self-processing module of the FrpC protein of Neisseria meningitidis

scientific article published on 3 July 2015

NMR determines transient structure and dynamics in the disordered C-terminal domain of WASp interacting protein

scientific article

Quantitative Conformational Analysis of Functionally Important Electrostatic Interactions in the Intrinsically Disordered Region of Delta Subunit of Bacterial RNA Polymerase

scientific article published on 10 October 2019

Quantitative mapping of microtubule-associated protein 2c (MAP2c) phosphorylation and regulatory protein 14-3-3ζ-binding sites reveals key differences between MAP2c and its homolog Tau.

scientific article published on June 2017

Retraction of Cooperation between Subunits Is Essential for High-Affinity Binding of N-Acetyl-d-hexosamines to Dimeric Soluble and Dimeric Cellular Forms of Human CD69

scientific article published on 15 April 2014

Retraction: Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69⁺ killer lymphocytes upon dimerization via a hydrophilic flexible linker. Journal of Medicinal Chemistry 20

scientific article published on 5 June 2014

Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition.

scientific article

Role of SH3b binding domain in a natural deletion mutant of Kayvirus endolysin LysF1 with a broad range of lytic activity

scientific article published on 29 August 2017

Soluble recombinant CD69 receptors optimized to have an exceptional physical and chemical stability display prolonged circulation and remain intact in the blood of mice

scientific article

Solution Structure of Domain 1.1 of the σ(A) Factor from Bacillus subtilis is Preformed for Binding to the RNA Polymerase Core

scientific article published on 24 May 2017

Stabilization of the β-hairpin in Mason-Pfizer monkey virus capsid protein- a critical step for infectivity

scientific article

Structural Aspects of Multistep Phosphorelay-Mediated Signaling in Plants

scientific article

Structural study of the partially disordered full-length δ subunit of RNA polymerase from Bacillus subtilis

scientific article

Structure and Functions of Microtubule Associated Proteins Tau and MAP2c: Similarities and Differences

scientific article published on 16 March 2019

Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana

scientific article

Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69+ killer lymphocytes upon dimerization via a hydrophilic flexible linker.

scientific article

The Eighth Central European Conference "Chemistry towards Biology": Snapshot

scientific article (publication date: 17 October 2016)

The effect of water on NMR spin–spin couplings in DNA: Improvement of calculated values by application of two solvent models

The influence of Mg2+ coordination on 13C and 15N chemical shifts in CKI1RD protein domain from experiment and molecular dynamics/density functional theory calculations.

scientific article

The δ subunit of RNA polymerase is required for rapid changes in gene expression and competitive fitness of the cell

scientific article published on 29 March 2013

Toward optimal-resolution NMR of intrinsically disordered proteins

scientific article published on April 2014

X-ray vs. NMR structure of N-terminal domain of δ-subunit of RNA polymerase

scientific article

List of works by Lukáš Žídek

Conformational Entropy from SRLS Analysis of (15)N-H Relaxation in Proteins: Application to Pheromone Binding to MUP-I in the 283-308 K Temperature Range

Conformational dynamics and antigenicity in the disordered malaria antigen merozoite surface protein 2

Cooperation between subunits is essential for high-affinity binding of N-acetyl-D-hexosamines to dimeric soluble and dimeric cellular forms of human CD69

Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c.

Exploring the Structure of a DNA Hairpin with the Help of NMR Spin−Spin Coupling Constants: An Experimental and Quantum Chemical Investigation

Hydroperoxidic inhibitor of horse liver alcohol dehydrogenase activity, tightly bound to the enzyme-NAD+ complex, characteristically degrades the coenzyme

Multiple recognition motifs in nucleoporin Nup159 provide a stable and rigid Nup159-Dyn2 assembly

NMR assignment of intrinsically disordered self-processing module of the FrpC protein of Neisseria meningitidis

NMR determines transient structure and dynamics in the disordered C-terminal domain of WASp interacting protein

Quantitative Conformational Analysis of Functionally Important Electrostatic Interactions in the Intrinsically Disordered Region of Delta Subunit of Bacterial RNA Polymerase

Quantitative mapping of microtubule-associated protein 2c (MAP2c) phosphorylation and regulatory protein 14-3-3ζ-binding sites reveals key differences between MAP2c and its homolog Tau.

Retraction of Cooperation between Subunits Is Essential for High-Affinity Binding of N-Acetyl-d-hexosamines to Dimeric Soluble and Dimeric Cellular Forms of Human CD69

Retraction: Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69⁺ killer lymphocytes upon dimerization via a hydrophilic flexible linker. Journal of Medicinal Chemistry 20

Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition.

Role of SH3b binding domain in a natural deletion mutant of Kayvirus endolysin LysF1 with a broad range of lytic activity

Soluble recombinant CD69 receptors optimized to have an exceptional physical and chemical stability display prolonged circulation and remain intact in the blood of mice

Solution Structure of Domain 1.1 of the σ(A) Factor from Bacillus subtilis is Preformed for Binding to the RNA Polymerase Core

Stabilization of the β-hairpin in Mason-Pfizer monkey virus capsid protein- a critical step for infectivity

Structural Aspects of Multistep Phosphorelay-Mediated Signaling in Plants

Structural study of the partially disordered full-length δ subunit of RNA polymerase from Bacillus subtilis

Structure and Functions of Microtubule Associated Proteins Tau and MAP2c: Similarities and Differences

Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana

Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69+ killer lymphocytes upon dimerization via a hydrophilic flexible linker.

The Eighth Central European Conference "Chemistry towards Biology": Snapshot

The effect of water on NMR spin–spin couplings in DNA: Improvement of calculated values by application of two solvent models

The influence of Mg2+ coordination on 13C and 15N chemical shifts in CKI1RD protein domain from experiment and molecular dynamics/density functional theory calculations.

The δ subunit of RNA polymerase is required for rapid changes in gene expression and competitive fitness of the cell

Toward optimal-resolution NMR of intrinsically disordered proteins

X-ray vs. NMR structure of N-terminal domain of δ-subunit of RNA polymerase