List of works - Vladimír Sklenář

13C-detected NMR experiments for measuring chemical shifts and coupling constants in nucleic acid bases

scientific article published on 14 August 2007

15N NMR study of isoquinoline alkaloids

1H and13C NMR study of quaternary benzo[c]phenanthridine alkaloids

1H, 13C, and 15N resonance assignment of the N-terminal domain of Mason-Pfizer monkey virus capsid protein, CA 1-140.

scientific article published on 26 March 2008

4D non-uniformly sampled HCBCACON and ¹J(NCα)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins

scientific article published on 13 May 2012

5D 13C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion

scientific article published on 20 March 2011

A-like guanine-guanine stacking in the aqueous DNA duplex of d(GGGGCCCC).

scientific article

An A-type double helix of DNA having B-type puckering of the deoxyribose rings.

scientific article

Assignment of the 31P and 1H resonances in oligonucleotides by two-dimensional NMR spectroscopy

scientific article published on 01 November 1986

Backbone motions of free and pheromone-bound major urinary protein I studied by molecular dynamics simulation

scientific article published on 28 April 2007

Binding sites and dynamics of ammonium ions in a telomere repeat DNA quadruplex.

scientific article

Conformational dynamics and antigenicity in the disordered malaria antigen merozoite surface protein 2

scientific article

Conformational perturbation due to an extra adenosine in a self-complementary oligodeoxynucleotide duplex

scientific article published on 01 December 1987

Cooperation between subunits is essential for high-affinity binding of N-acetyl-D-hexosamines to dimeric soluble and dimeric cellular forms of human CD69

scientific article published on 01 May 2010

Determination of the glycosidic torsion angles in uniformly 13C-labeled nucleic acids from vicinal coupling constants 3J(C2)/4-H1' and 3J(C6)/8-H1'.

scientific article published in May 2002

Direct determination of tautomerism in purine derivatives by low-temperature NMR spectroscopy

Dispersion Interactions Govern the Strong Thermal Stability of a Protein

scientific article published on 01 January 2007

Dissection of binding between a phosphorylated tyrosine hydroxylase peptide and 14-3-3zeta: A complex story elucidated by NMR.

scientific article published on November 2014

Dracophane, a metacyclophane derivative from the resin of Dracaena cinnabari Balf

article

Effect of the carbon source on assessment of degrading bacteria with the spread-plating technique duringin situ bioremediation

scientific article published in February 2000

Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c.

scientific article published on 23 July 2013

Enantioselective effects of alpha-hexachlorocyclohexane (HCH) isomers on androgen receptor activity in vitro.

scientific article published on 2 October 2011

Erratum to: Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions

scientific article published on 23 May 2016

Experiments for correlating quaternary carbons in RNA bases.

scientific article published in August 2004

Exploring non-covalent interactions in guanine- and xanthine-based model DNA quadruplex structures: a comprehensive quantum chemical approach

scientific article published in 2014

Exploring the Structure of a DNA Hairpin with the Help of NMR Spin−Spin Coupling Constants: An Experimental and Quantum Chemical Investigation

article by Vladimír Sychrovský et al published October 2002 in Journal of Physical Chemistry

Gradient-enhanced HSQC experiments for phase-sensitive detection of multiple bond interactions

article published in 1997

Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

scientific article (publication date: November 1992)

HCCCH experiment for through-bond correlation of thymine resonances in 13C-labeled DNA oligonucleotides

scientific article published on 01 April 1999

Hydrogen bonding effects on the (15)N and (1)H shielding tensors in nucleic acid base pairs

scientific article published on 01 July 2000

Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions.

scientific article published on 19 December 2015

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic ¹⁵N chemical shielding anisotropy tensors

scientific article published in December 2012

Investigation of thermal denaturation of barley nonspecific lipid transfer protein 1 (ns-LTP1b) by nuclear magnetic resonance and differential scanning calorimetry.

scientific article published in September 2009

Loss of loop adenines alters human telomere d[AG3(TTAG3)3] quadruplex folding

scientific article

Measurement of long-range 1H-19F scalar coupling constants and their glycosidic torsion dependence in 5-fluoropyrimidine-substituted RNA

scientific article published on May 2006

N.m.r. and c.d. studies of the DNA fragments d(TATATATA) and d(TATATA) in solution

scientific article published on 01 October 1989

NMR Cross-Correlated Relaxation Rates Reveal Ion Coordination Sites in DNA

scientific article published on 7 September 2011

NMR methodology for the study of nucleic acids.

scientific article published in June 2001

NMR structure of the N-terminal domain of capsid protein from the mason-pfizer monkey virus

scientific article

Nucleic Acid Quadruplexes Based on 8-Halo-9-deazaxanthines: Energetics and Noncovalent Interactions in Quadruplex Stems

article

Optimization of triple-resonance HCN experiments for application to larger RNA oligonucleotides

scientific article published on 01 January 1998

Origin of the conformational modulation of the 13C NMR chemical shift of methoxy groups in aromatic natural compounds.

scientific article published on 14 January 2013

Palmatine and Berberine Isolation Artifacts ⬇️

scientific article published on April 1, 2003

Phosphorus NMR spectra of natural DNA fragments in the course of the B-to-A conformational transition

scientific article published on 01 September 1986

Phosphorus chemical shifts in a nucleic acid backbone from combined molecular dynamics and density functional calculations

scientific article published on 12 November 2010

Program MULDER -- a tool for extracting torsion angles from NMR data.

scientific article

Proton nuclear magnetic resonance assignments and structural characterization of an intramolecular DNA triplex

scientific article published on June 5, 1992

Reaction mechanism and stereochemistry of gamma-hexachlorocyclohexane dehydrochlorinase LinA.

scientific article

Refinement of d(GCGAAGC) hairpin structure using one- and two-bond residual dipolar couplings

scientific article

Relationships between 31P chemical shift tensors and conformation of nucleic acid backbone: a DFT study

scientific article published on 22 February 2007

Retraction of Cooperation between Subunits Is Essential for High-Affinity Binding of N-Acetyl-d-hexosamines to Dimeric Soluble and Dimeric Cellular Forms of Human CD69

scientific article published on 15 April 2014

Retraction: Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69⁺ killer lymphocytes upon dimerization via a hydrophilic flexible linker. Journal of Medicinal Chemistry 20

scientific article published on 5 June 2014

Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition.

scientific article

Salt-induced conformational transition of poly[d(A-T)] X poly[d(A-T)]

scientific article published on 01 May 1983

Sanguinarine pseudobase: re-examination of NMR assignments using gradient-enhanced spectroscopy

article by Jiří Dostál et al published November 1998 in Magnetic Resonance in Chemistry

Spectral density mapping at multiple magnetic fields suitable for (13)C NMR relaxation studies.

scientific article

Spectral density mapping protocols for analysis of molecular motions in disordered proteins

scientific article published on 11 February 2014

Strange double helix of poly (dA-dT) in high-salt solution

scientific article published on 01 April 1981

Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments

scientific article

Structural Studies of Chelirubine and Chelilutine Free Bases

Structural study of the partially disordered full-length δ subunit of RNA polymerase from Bacillus subtilis

scientific article

Structure and NMR properties of 6-substituted-5,6-dihydrobenzo[c]phenanthridine alkaloids

Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana

scientific article

Structure of Bombyx mori chemosensory protein 1 in solution

scientific article

Substituting CF2for O4′ in Components of Nucleic Acids: Towards Systems with Reduced Propensity to Form Abasic Lesions

article

Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69+ killer lymphocytes upon dimerization via a hydrophilic flexible linker.

scientific article

Temperature-dependent spectral density analysis applied to monitoring backbone dynamics of major urinary protein-I complexed with the pheromone 2- sec-butyl-4,5-dihydrothiazole.

scientific article published in April 2004

The Eighth Central European Conference "Chemistry towards Biology": Snapshot

scientific article (publication date: 17 October 2016)

The effect of water on NMR spin–spin couplings in DNA: Improvement of calculated values by application of two solvent models

Three-bond sugar-base couplings in purine versus pyrimidine nucleosides: a DFT study of Karplus relationships for (3)J(C2/4-H1') and (3)J(C6/8-H1') in DNA.

scientific article

Through-bond correlation of imino and aromatic resonances in 13C-, 15N-labeled RNA via heteronuclear TOCSY

scientific article published on 01 January 1996

Toward Reproducing Sequence Trends in Phosphorus Chemical Shifts for Nucleic Acids by MD/DFT Calculations

scientific article

Toward optimal-resolution NMR of intrinsically disordered proteins

scientific article published on April 2014

Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids

scientific article published on 01 April 2000

Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins

scientific article

Understanding the NMR properties and conformational behavior of indole vs. azaindole group in protoberberines: NICS and NCS analysis

article

Water suppression in two-dimensional spin-locked NMR experiments using a novel phase-cycling procedure

article

X-ray vs. NMR structure of N-terminal domain of δ-subunit of RNA polymerase

scientific article

List of works by Vladimír Sklenář

13C-detected NMR experiments for measuring chemical shifts and coupling constants in nucleic acid bases

15N NMR study of isoquinoline alkaloids

1H and13C NMR study of quaternary benzo[c]phenanthridine alkaloids

1H, 13C, and 15N resonance assignment of the N-terminal domain of Mason-Pfizer monkey virus capsid protein, CA 1-140.

4D non-uniformly sampled HCBCACON and ¹J(NCα)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins

5D 13C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion

A-like guanine-guanine stacking in the aqueous DNA duplex of d(GGGGCCCC).

An A-type double helix of DNA having B-type puckering of the deoxyribose rings.

Assignment of the 31P and 1H resonances in oligonucleotides by two-dimensional NMR spectroscopy

Backbone motions of free and pheromone-bound major urinary protein I studied by molecular dynamics simulation

Binding sites and dynamics of ammonium ions in a telomere repeat DNA quadruplex.

Conformational dynamics and antigenicity in the disordered malaria antigen merozoite surface protein 2

Conformational perturbation due to an extra adenosine in a self-complementary oligodeoxynucleotide duplex

Cooperation between subunits is essential for high-affinity binding of N-acetyl-D-hexosamines to dimeric soluble and dimeric cellular forms of human CD69

Determination of the glycosidic torsion angles in uniformly 13C-labeled nucleic acids from vicinal coupling constants 3J(C2)/4-H1' and 3J(C6)/8-H1'.

Direct determination of tautomerism in purine derivatives by low-temperature NMR spectroscopy

Dispersion Interactions Govern the Strong Thermal Stability of a Protein

Dissection of binding between a phosphorylated tyrosine hydroxylase peptide and 14-3-3zeta: A complex story elucidated by NMR.

Dracophane, a metacyclophane derivative from the resin of Dracaena cinnabari Balf

Effect of the carbon source on assessment of degrading bacteria with the spread-plating technique duringin situ bioremediation

Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c.

Enantioselective effects of alpha-hexachlorocyclohexane (HCH) isomers on androgen receptor activity in vitro.

Erratum to: Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions

Experiments for correlating quaternary carbons in RNA bases.

Exploring non-covalent interactions in guanine- and xanthine-based model DNA quadruplex structures: a comprehensive quantum chemical approach

Exploring the Structure of a DNA Hairpin with the Help of NMR Spin−Spin Coupling Constants: An Experimental and Quantum Chemical Investigation

Gradient-enhanced HSQC experiments for phase-sensitive detection of multiple bond interactions

Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

HCCCH experiment for through-bond correlation of thymine resonances in 13C-labeled DNA oligonucleotides

Hydrogen bonding effects on the (15)N and (1)H shielding tensors in nucleic acid base pairs

Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions.

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic ¹⁵N chemical shielding anisotropy tensors

Investigation of thermal denaturation of barley nonspecific lipid transfer protein 1 (ns-LTP1b) by nuclear magnetic resonance and differential scanning calorimetry.

Loss of loop adenines alters human telomere d[AG3(TTAG3)3] quadruplex folding

Measurement of long-range 1H-19F scalar coupling constants and their glycosidic torsion dependence in 5-fluoropyrimidine-substituted RNA

N.m.r. and c.d. studies of the DNA fragments d(TATATATA) and d(TATATA) in solution

NMR Cross-Correlated Relaxation Rates Reveal Ion Coordination Sites in DNA

NMR methodology for the study of nucleic acids.

NMR structure of the N-terminal domain of capsid protein from the mason-pfizer monkey virus

Nucleic Acid Quadruplexes Based on 8-Halo-9-deazaxanthines: Energetics and Noncovalent Interactions in Quadruplex Stems

Optimization of triple-resonance HCN experiments for application to larger RNA oligonucleotides

Origin of the conformational modulation of the 13C NMR chemical shift of methoxy groups in aromatic natural compounds.

Palmatine and Berberine Isolation Artifacts ⬇️

Phosphorus NMR spectra of natural DNA fragments in the course of the B-to-A conformational transition

Phosphorus chemical shifts in a nucleic acid backbone from combined molecular dynamics and density functional calculations

Program MULDER -- a tool for extracting torsion angles from NMR data.

Proton nuclear magnetic resonance assignments and structural characterization of an intramolecular DNA triplex

Reaction mechanism and stereochemistry of gamma-hexachlorocyclohexane dehydrochlorinase LinA.

Refinement of d(GCGAAGC) hairpin structure using one- and two-bond residual dipolar couplings

Relationships between 31P chemical shift tensors and conformation of nucleic acid backbone: a DFT study

Retraction of Cooperation between Subunits Is Essential for High-Affinity Binding of N-Acetyl-d-hexosamines to Dimeric Soluble and Dimeric Cellular Forms of Human CD69

Retraction: Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69⁺ killer lymphocytes upon dimerization via a hydrophilic flexible linker. Journal of Medicinal Chemistry 20

Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition.

Salt-induced conformational transition of poly[d(A-T)] X poly[d(A-T)]

Sanguinarine pseudobase: re-examination of NMR assignments using gradient-enhanced spectroscopy

Spectral density mapping at multiple magnetic fields suitable for (13)C NMR relaxation studies.

Spectral density mapping protocols for analysis of molecular motions in disordered proteins

Strange double helix of poly (dA-dT) in high-salt solution

Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments

Structural Studies of Chelirubine and Chelilutine Free Bases

Structural study of the partially disordered full-length δ subunit of RNA polymerase from Bacillus subtilis

Structure and NMR properties of 6-substituted-5,6-dihydrobenzo[c]phenanthridine alkaloids

Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana

Structure of Bombyx mori chemosensory protein 1 in solution

Substituting CF2for O4′ in Components of Nucleic Acids: Towards Systems with Reduced Propensity to Form Abasic Lesions

Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69+ killer lymphocytes upon dimerization via a hydrophilic flexible linker.

Temperature-dependent spectral density analysis applied to monitoring backbone dynamics of major urinary protein-I complexed with the pheromone 2- sec-butyl-4,5-dihydrothiazole.

The Eighth Central European Conference "Chemistry towards Biology": Snapshot

The effect of water on NMR spin–spin couplings in DNA: Improvement of calculated values by application of two solvent models

Three-bond sugar-base couplings in purine versus pyrimidine nucleosides: a DFT study of Karplus relationships for (3)J(C2/4-H1') and (3)J(C6/8-H1') in DNA.

Through-bond correlation of imino and aromatic resonances in 13C-, 15N-labeled RNA via heteronuclear TOCSY

Toward Reproducing Sequence Trends in Phosphorus Chemical Shifts for Nucleic Acids by MD/DFT Calculations

Toward optimal-resolution NMR of intrinsically disordered proteins

Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids

Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins

Understanding the NMR properties and conformational behavior of indole vs. azaindole group in protoberberines: NICS and NCS analysis

Water suppression in two-dimensional spin-locked NMR experiments using a novel phase-cycling procedure

X-ray vs. NMR structure of N-terminal domain of δ-subunit of RNA polymerase