List of works - Jing He

A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data

scientific article

A constraint logic programming approach to associate 1D and 3D structural components for large protein complexes.

scientific article published in January 2007

A distance- and orientation-dependent energy function of amino acid key blocks

scientific article

A machine learning approach for the identification of protein secondary structure elements from electron cryo-microscopy density maps.

scientific article published on September 2012

An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent

scientific article published in January 2009

Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions

article published in 2012

Combining image processing and modeling to generate traces of beta-strands from cryo-EM density images of beta-barrels

scientific article

Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Density Maps

scientific article published on 07 April 2020

DERIVING TOPOLOGY AND SEQUENCE ALIGNMENT FOR THE HELIX SKELETON IN LOW-RESOLUTION PROTEIN DENSITY MAPS

scientific article published on 01 February 2008

Estimating loop length from CryoEM images at medium resolutions

scientific article

Finding and using local symmetry in identifying lower domain movements in hexon subunits of the herpes simplex virus type 1 B capsid

scientific article published in June 2001

From isotropic to anisotropic side chain representations: comparison of three models for residue contact estimation

scientific article

Improved efficiency in cryo-EM secondary structure topology determination from inaccurate data

scientific article

Intensity-based skeletonization of CryoEM gray-scale images using a true segmentation-free algorithm.

scientific article

Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps

scientific article

Native secondary structure topology has near minimum contact energy among all possible geometrically constrained topologies

scientific article published in October 2009

Numerical geometry of map and model assessment.

scientific article

Ranking valid topologies of the secondary structure elements using a constraint graph

scientific article published on June 2011

Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures

scientific article

Solving the Secondary Structure Matching Problem in Cryo-EM De Novo Modeling Using a Constrained K-Shortest Path Graph Algorithm

scientific article published on March 2014

The 3rd Computational Structural Bioinformatics Workshop

scientific article (publication date: 2010)

The 6th Computational Structural Bioinformatics Workshop

scientific article published on 8 November 2013

The 7th Computational Structural Bioinformatics Workshop

scientific article

Tracing Beta Strands Using StrandTwister from Cryo-EM Density Maps at Medium Resolutions

scientific article published on 09 October 2014

Understanding on the residue contact network using the log-normal cluster model and the multilevel wheel diagram

scientific article published in October 2010

List of works by Jing He

A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data

A constraint logic programming approach to associate 1D and 3D structural components for large protein complexes.

A distance- and orientation-dependent energy function of amino acid key blocks

A machine learning approach for the identification of protein secondary structure elements from electron cryo-microscopy density maps.

An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent

Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions

Combining image processing and modeling to generate traces of beta-strands from cryo-EM density images of beta-barrels

Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Density Maps

DERIVING TOPOLOGY AND SEQUENCE ALIGNMENT FOR THE HELIX SKELETON IN LOW-RESOLUTION PROTEIN DENSITY MAPS

Estimating loop length from CryoEM images at medium resolutions

Finding and using local symmetry in identifying lower domain movements in hexon subunits of the herpes simplex virus type 1 B capsid

From isotropic to anisotropic side chain representations: comparison of three models for residue contact estimation

Improved efficiency in cryo-EM secondary structure topology determination from inaccurate data

Intensity-based skeletonization of CryoEM gray-scale images using a true segmentation-free algorithm.

Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps

Native secondary structure topology has near minimum contact energy among all possible geometrically constrained topologies

Numerical geometry of map and model assessment.

Ranking valid topologies of the secondary structure elements using a constraint graph

Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures

Solving the Secondary Structure Matching Problem in Cryo-EM De Novo Modeling Using a Constrained K-Shortest Path Graph Algorithm

The 3rd Computational Structural Bioinformatics Workshop

The 6th Computational Structural Bioinformatics Workshop

The 7th Computational Structural Bioinformatics Workshop

Tracing Beta Strands Using StrandTwister from Cryo-EM Density Maps at Medium Resolutions

Understanding on the residue contact network using the log-normal cluster model and the multilevel wheel diagram