List of works - Achilleas S Frangakis

3D Ultrastructural organization of whole Chlamydomonas reinhardtii cells studied by nanoscale soft x-ray tomography

scientific article

A visualization and segmentation toolbox for electron microscopy

scientific article published on 17 May 2008

Alignator: a GPU powered software package for robust fiducial-less alignment of cryo tilt-series

scientific article

Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ

scientific article

Atheroprotective communication between endothelial cells and smooth muscle cells through miRNAs

scientific journal article

Binary Pt–Si Nanostructures Prepared by Focused Electron-Beam-Induced Deposition

scientific article published on 29 November 2011

CENP-A arrays are more condensed than canonical arrays at low ionic strength

scientific article published on February 2014

Classification of cryo-electron sub-tomograms using constrained correlation

scientific article

Classification of electron sub-tomograms with neural networks and its application to template-matching.

scientific article

Computational exploration of structural information from cryo-electron tomograms.

scientific article published on June 2004

Correlative light- and electron microscopy with chemical tags

scientific article published on 31 March 2014

Cryo-electron tomography analyses of terminal organelle mutants suggest the motility mechanism of Mycoplasma genitalium

scientific article published on 24 March 2018

Cryo-electron tomography reveals the cytoskeletal structure of Spiroplasma melliferum

scientific article published on January 2005

Cysteine oxidation and disulfide formation in the ribosomal exit tunnel

scientific article published on 04 November 2020

Cytoplasmic relaxation of active Eph controls ephrin shedding by ADAM10

scientific article (publication date: October 2009)

Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei

scientific article

FhuA-mediated phage genome transfer into liposomes: a cryo-electron tomography study

scientific article published on August 2001

Fiducial-less alignment of cryo-sections

scientific article

Helical arrays of U-shaped ATP synthase dimers form tubular cristae in ciliate mitochondria

scientific article published on 11 July 2016

Heritable yeast prions have a highly organized three-dimensional architecture with interfiber structures

scientific article

Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure

scientific article

Identification of macromolecular complexes in cryoelectron tomograms of phantom cells

scientific article

Immunodominant proteins P1 and P40/P90 from human pathogen Mycoplasma pneumoniae

scientific article published on 14 October 2020

Implementation and performance evaluation of reconstruction algorithms on graphics processors.

scientific article published in September 2006

M-free: Mask-independent scoring of the reference bias

scientific article published on 28 August 2015

M-free: scoring the reference bias in sub-tomogram averaging and template matching.

scientific article

Macromolecular Architecture in Eukaryotic Cells Visualized by Cryoelectron Tomography

scientific article published in Science

Multiple large filament bundles observed in Caulobacter crescentus by electron cryotomography

scientific article

Noise Reduction in Electron Tomographic Reconstructions Using Nonlinear Anisotropic Diffusion

scientific article published on 01 September 2001

Nucleosomes stacked with aligned dyad axes are found in native compact chromatin in vitro

scientific article

PLEKHM1 regulates Salmonella-containing vacuole biogenesis and infection

scientific article published on 11 December 2014

Performance evaluation of image processing algorithms on the GPU.

scientific article published on 24 July 2008

Plastic-embedded protein crystals.

scientific article published on 15 December 2006

Proteome organization in a genome-reduced bacterium

scientific journal article

Quantitative analysis of cytoskeletal reorganization during epithelial tissue sealing by large-volume electron tomography

scientific article published on 20 April 2015

Quantitative and spatio-temporal features of protein aggregation in Escherichia coli and consequences on protein quality control and cellular ageing

scientific article

Reprint of "Fiducial-less alignment of cryo-sections" [J. Struct. Biol. 159 (2007) 413-423].

scientific article

Room temperature L10phase transformation in binary CoPt nanostructures prepared by focused-electron-beam-induced deposition

scientific article published on 13 April 2012

Segmentation of two- and three-dimensional data from electron microscopy using eigenvector analysis.

scientific article

Special issue on electron tomography

scientific article published on 20 March 2012

Structural analysis of Mycoplasma pneumoniae by cryo-electron tomography

scientific article published on 7 May 2006

Structural and functional analysis of the promiscuous AcrB and AdeB efflux pumps suggests different drug binding mechanisms

scientific article published on 25 November 2021

Structural characterization of the NAP; the major adhesion complex of the human pathogen Mycoplasma genitalium.

scientific article published on 3 July 2017

Structural studies on desmosomes.

scientific article published on April 2008

Structure and mechanism of the Nap adhesion complex from the human pathogen Mycoplasma genitalium

scientific article published on 08 June 2020

Structure of RNA polymerase I transcribing ribosomal DNA genes.

scientific article published on 14 November 2016

Structure of reconstituted bacterial membrane efflux pump by cryo-electron tomography.

scientific article

Super-sampling SART with ordered subsets

scientific article

The molecular architecture of cadherins in native epidermal desmosomes

scientific article

The three-dimensional molecular structure of the desmosomal plaque

scientific article

Three-dimensional CTF correction improves the resolution of electron tomograms

scientific article

Three-dimensional visualization of the molecular architecture of cell-cell junctions in situ by cryo-electron tomography of vitreous sections.

scientific article

Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis

scientific article

Visualization of cell microtubules in their native state

scientific article published on January 2007

Visualization of macromolecular structures.

scientific article

Wavelet transform filtering and nonlinear anisotropic diffusion assessed for signal reconstruction performance on multidimensional biomedical data

scientific article

List of works by Achilleas S Frangakis

3D Ultrastructural organization of whole Chlamydomonas reinhardtii cells studied by nanoscale soft x-ray tomography

A visualization and segmentation toolbox for electron microscopy

Alignator: a GPU powered software package for robust fiducial-less alignment of cryo tilt-series

Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ

Atheroprotective communication between endothelial cells and smooth muscle cells through miRNAs

Binary Pt–Si Nanostructures Prepared by Focused Electron-Beam-Induced Deposition

CENP-A arrays are more condensed than canonical arrays at low ionic strength

Classification of cryo-electron sub-tomograms using constrained correlation

Classification of electron sub-tomograms with neural networks and its application to template-matching.

Computational exploration of structural information from cryo-electron tomograms.

Correlative light- and electron microscopy with chemical tags

Cryo-electron tomography analyses of terminal organelle mutants suggest the motility mechanism of Mycoplasma genitalium

Cryo-electron tomography reveals the cytoskeletal structure of Spiroplasma melliferum

Cysteine oxidation and disulfide formation in the ribosomal exit tunnel

Cytoplasmic relaxation of active Eph controls ephrin shedding by ADAM10

Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei

FhuA-mediated phage genome transfer into liposomes: a cryo-electron tomography study

Fiducial-less alignment of cryo-sections

Helical arrays of U-shaped ATP synthase dimers form tubular cristae in ciliate mitochondria

Heritable yeast prions have a highly organized three-dimensional architecture with interfiber structures

Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure

Identification of macromolecular complexes in cryoelectron tomograms of phantom cells

Immunodominant proteins P1 and P40/P90 from human pathogen Mycoplasma pneumoniae

Implementation and performance evaluation of reconstruction algorithms on graphics processors.

M-free: Mask-independent scoring of the reference bias

M-free: scoring the reference bias in sub-tomogram averaging and template matching.

Macromolecular Architecture in Eukaryotic Cells Visualized by Cryoelectron Tomography

Multiple large filament bundles observed in Caulobacter crescentus by electron cryotomography

Noise Reduction in Electron Tomographic Reconstructions Using Nonlinear Anisotropic Diffusion

Nucleosomes stacked with aligned dyad axes are found in native compact chromatin in vitro

PLEKHM1 regulates Salmonella-containing vacuole biogenesis and infection

Performance evaluation of image processing algorithms on the GPU.

Plastic-embedded protein crystals.

Proteome organization in a genome-reduced bacterium

Quantitative analysis of cytoskeletal reorganization during epithelial tissue sealing by large-volume electron tomography

Quantitative and spatio-temporal features of protein aggregation in Escherichia coli and consequences on protein quality control and cellular ageing

Reprint of "Fiducial-less alignment of cryo-sections" [J. Struct. Biol. 159 (2007) 413-423].

Room temperature L10phase transformation in binary CoPt nanostructures prepared by focused-electron-beam-induced deposition

Segmentation of two- and three-dimensional data from electron microscopy using eigenvector analysis.

Special issue on electron tomography

Structural analysis of Mycoplasma pneumoniae by cryo-electron tomography

Structural and functional analysis of the promiscuous AcrB and AdeB efflux pumps suggests different drug binding mechanisms

Structural characterization of the NAP; the major adhesion complex of the human pathogen Mycoplasma genitalium.

Structural studies on desmosomes.

Structure and mechanism of the Nap adhesion complex from the human pathogen Mycoplasma genitalium

Structure of RNA polymerase I transcribing ribosomal DNA genes.

Structure of reconstituted bacterial membrane efflux pump by cryo-electron tomography.

Super-sampling SART with ordered subsets

The molecular architecture of cadherins in native epidermal desmosomes

The three-dimensional molecular structure of the desmosomal plaque

Three-dimensional CTF correction improves the resolution of electron tomograms

Three-dimensional visualization of the molecular architecture of cell-cell junctions in situ by cryo-electron tomography of vitreous sections.

Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis

Visualization of cell microtubules in their native state

Visualization of macromolecular structures.

Wavelet transform filtering and nonlinear anisotropic diffusion assessed for signal reconstruction performance on multidimensional biomedical data