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List of works by Panagiotis L. Kastritis

2.7 Å cryo-EM structure of vitrified M. musculus H-chain apoferritin from a compact 200 keV cryo-microscope

scientific article published on 06 May 2020

A structure-based benchmark for protein-protein binding affinity

scientific article

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum

scientific article published on 14 November 2014

Antimicrobial and efflux pump inhibitory activity of caffeoylquinic acids from Artemisia absinthium against gram-positive pathogenic bacteria

scientific article

Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark

scientific article

Blind prediction of interfacial water positions in CAPRI

scientific article

Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server

scientific article published on 19 March 2010

Capturing protein communities by structural proteomics in a thermophilic eukaryote.

scientific article published on 25 July 2017

Clustering biomolecular complexes by residue contacts similarity

scientific article published on 8 May 2012

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

scientific article

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

scientific article

Constructing artificial respiratory chain in polymer compartments: Insights into the interplay between bo 3 oxidase and the membrane

scientific article published on 17 June 2020

Cryo-EM snapshots of a native lysate provide structural insights into a metabolon-embedded transacetylase reaction

scientific article published on 26 November 2021

Defining distance restraints in HADDOCK

scientific article published on 25 June 2018

Defining the limits of homology modeling in information-driven protein docking

scientific article published on 17 October 2013

Explicit treatment of water molecules in data-driven protein-protein docking: the solvated HADDOCKing approach.

scientific article

HADDOCK(2P2I): a biophysical model for predicting the binding affinity of protein-protein interaction inhibitors.

scientific article

Haloadaptation: insights from comparative modeling studies of halophilic archaeal DHFRs.

scientific article published on 19 June 2007

In situ structural analysis of the human nuclear pore complex

scientific article

Insights on cross-species transmission of SARS-CoV-2 from structural modeling

scientific article published on 05 June 2020

Insights on cross-species transmission of SARS-CoV-2 from structural modeling

scientific article published on 03 December 2020

Integrative biology of native cell extracts: a new era for structural characterization of life processes

scientific article published on 01 June 2019

Molecular origins of binding affinity: seeking the Archimedean point

scientific article

New potential peptide therapeutics perturbing CK1δ/α-tubulin interaction

scientific article

Next challenges in protein-protein docking: from proteome to interactome and beyond

scientific article published on 28 September 2011

Non-interacting surface solvation and dynamics in protein-protein interactions.

scientific article published on 21 January 2015

Novel exotic alleles of <i>EARLY FLOWERING 3</i> determine plant development in barley

scientific article published in 2023

On the binding affinity of macromolecular interactions: daring to ask why proteins interact ⬇️

scientific article published on December 12, 2012

PRODIGY: a web server for predicting the binding affinity of protein-protein complexes

scientific article published on 8 August 2016

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

scientific article

Protein-Protein Docking with HADDOCK

scientific article published on 21 March 2012

Proteins feel more than they see: fine-tuning of binding affinity by properties of the non-interacting surface.

scientific article published on 25 April 2014

Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.

scientific article

Solvated protein-DNA docking using HADDOCK.

scientific article

Solvated protein-protein docking using Kyte-Doolittle-based water preferences

scientific article published on 24 December 2012

Spatiotemporal variation of mammalian protein complex stoichiometries.

scientific article published on 14 March 2016

Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.

scientific article

Structural basis for assembly and function of the Nup82 complex in the nuclear pore scaffold

scientific article

Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress

scientific article published on 27 August 2020

Structural models of human ACE2 variants with SARS-CoV-2 Spike protein for structure-based drug design

scientific article published on 16 September 2020

Subnanometre-resolution structure of the doublet microtubule reveals new classes of microtubule-associated proteins

scientific article published on 2 May 2017

The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex

scientific article published on 8 January 2016

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.

scientific article

Unstructured regions of large enzymatic complexes control the availability of metabolites with signaling functions

scientific article published on 26 August 2020

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

scientific article

dMM-PBSA: A New HADDOCK Scoring Function for Protein-Peptide Docking

scientific article

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