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List of works by Han Ming Gan

Absence of evidence is not evidence of absence: Nanopore sequencing and complete assembly of the European lobster (Homarus gammarus) mitogenome uncovers the missing nad2 and a new major gene cluster duplication

article

Analysis of anoxybacillus genomes from the aspects of lifestyle adaptations, prophage diversity, and carbohydrate metabolism

scientific article

Biodegradation of 4-aminobenzenesulfonate by Ralstonia sp. PBA and Hydrogenophaga sp. PBC isolated from textile wastewater treatment plant

scientific article published on 20 November 2010

Biodegradation of thiocyanate by a native groundwater microbial consortium

scientific article published on 26 March 2019

Changes in rumen protozoal community by condensed tannin fractions of different molecular weights from a Leucaena leucocephala hybrid in vitro.

scientific article

Characterisation of 12 microsatellite loci in the Vietnamese commercial clam Lutraria rhynchaena Jonas 1844 (Heterodonta: Bivalvia: Mactridae) through next-generation sequencing

scientific article

Characterization of an autotrophic bioreactor microbial consortium degrading thiocyanate.

scientific article published on 16 May 2017

Characterization of the first mitogenomes of the smallest fish in the world, Paedocypris progenetica, from peat swamp of Peninsular Malaysia, Selangor, and Perak

scientific article published in 2022

Cloning and functional analysis of the genes coding for 4-aminobenzenesulfonate 3,4-dioxygenase from Hydrogenophaga sp. PBC.

scientific article

Commentary: Complete Genome Sequence of 3-Chlorobenzoate-Degrading Bacterium Cupriavidus necator NH9 and Reclassification of the Strains of the Genera Cupriavidus and Ralstonia Based on Phylogenetic and Whole-Genome Sequence Analyses

scientific article published on 28 August 2019

Commentary: Genome Sequence of Vibrio parahaemolyticus VP152 Strain Isolated From Penaeus indicus in Malaysia.

scientific article

Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation.

scientific article

Comparative genomics of closely related Salmonella enterica serovar Typhi strains reveals genome dynamics and the acquisition of novel pathogenic elements

scientific article

Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition

scientific article published on 24 July 2019

Complete genome sequence of Novosphingobium resinovorum SA1, a versatile xenobiotic-degrading bacterium capable of utilizing sulfanilic acid

scientific article published on 13 November 2016

Corrigendum to “MitoPhAST, a new automated mitogenomic phylogeny tool in the post-genomic era with a case study of 89 decapod mitogenomes including eight new freshwater crayfish mitogenomes” [Mol. Phylogenet. Evol. 85 (2015) 180–188]

scholarly article by Mun Hua Tan published in June 2015

DNA metabarcoding of insects and allies: an evaluation of primers and pipelines.

scientific article published on 7 September 2015

Data on whole-genome sequencing of extended-spectrum beta-lactamases producing Enterobacteriaceae isolates from Malaysia

scientific article published on 13 July 2019

De Novo assembly and characterisation of the greentail prawn (Metapenaeus bennettae) hepatopancreas transcriptome - identification of stress response and detoxification transcripts

scientific article published on 12 April 2019

De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read

scientific article published on August 2017

Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses

scientific article

Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and Caridea (Crustacea: Decapoda)

scientific article

Draft Genome Sequence of Clostridium bifermentans Strain WYM, a Promising Biohydrogen Producer Isolated from Landfill Leachate Sludge

scientific article published on 6 March 2014

Draft Genome Sequence of Clostridium perfringens Strain JJC, a Highly Efficient Hydrogen Producer Isolated from Landfill Leachate Sludge

scientific article (publication date: 6 March 2014)

Draft Genome Sequence of Clostridium sp. Strain Ade.TY, a New Biohydrogen- and Biochemical-Producing Bacterium Isolated from Landfill Leachate Sludge

scientific article (publication date: 6 March 2014)

Draft Genome Sequence of Jeotgalibacillus soli DSM 23228, a Bacterium Isolated from Alkaline Sandy Soil.

scientific article published on 21 May 2015

Draft Genome Sequence of Paenibacillus sp. Strain MSt1 with Broad Antimicrobial Activity, Isolated from Malaysian Tropical Peat Swamp Soil.

scientific article

Draft Genome Sequence of Yellow Pigmented Jeotgalibacillus alimentarius JY-13T, the First Halophile Strain of the Genus Jeotgalibacillus

scientific article published on 22 October 2015

Draft Genome Sequences of Six Enterococcus faecalis Strains Isolated from Malaysian Clinical and Environmental Origins

scientific article

Draft Genome Sequences of Two Antimicrobial-Producing Burkholderia sp. Strains, MSh1 and MSh2, Isolated from Malaysian Tropical Peat Swamp Forest Soil

scientific article

Draft genome of Jeotgalibacillus campisalis SF-57(T), a moderate halophilic bacterium isolated from marine saltern

scientific article published on 18 May 2015

Draft genome sequence of Pantoea sp. strain A4, a Rafflesia-associated bacterium that produces N-acylhomoserine lactones as quorum-sensing molecules

scientific article published on December 2012

Elucidating the diet of the island flying fox (Pteropus hypomelanus) in Peninsular Malaysia through Illumina Next-Generation Sequencing

scientific article

Erratum: Author Correction: High-resolution bacterial 16S rRNA gene profile meta-analysis and biofilm status reveal common colorectal cancer consortia

article

Expansion and systematics redefinition of the most threatened freshwater mussel family, the Margaritiferidae

scientific article published on 03 May 2018

Field calibration of blowfly-derived DNA against traditional methods for assessing mammal diversity in tropical forests

scientific article

Finding Nemo: Hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the Clownfish (Amphiprion ocellaris) genome assembly.

scientific article published on 12 January 2018

First Complete Genome Sequence of a Chikungunya Virus Strain Isolated from a Patient Diagnosed with Dengue Virus Infection in Malaysia

scientific article (publication date: 25 August 2016)

First High-Quality Draft Genome Sequence of Pasteurella multocida Sequence Type 128 Isolated from Infected Bone

scientific article published on 3 March 2016

First comprehensive multi-tissue transcriptome of Cherax quadricarinatus (Decapoda: Parastacidae) reveals unexpected diversity of endogenous cellulase

article published in 2015

First genomic insights into carbapenem-resistant Klebsiella pneumoniae from Malaysia

scientific article published on 17 July 2019

Genetic diversity of Enterococcus faecalis isolated from environmental, animal and clinical sources in Malaysia

scientific article

Genome Assembly and Analysis of the Flavonoid and Phenylpropanoid Biosynthetic Pathways in Fingerroot Ginger (Boesenbergia rotunda)

scientific article published in 2022

Genome Sequence of Nitratireductor basaltis Strain UMTGB225, a Marine Bacterium Isolated from a Green Barrel Tunicate in Bidong Island, Malaysia

scientific article published on 9 October 2014

Genome Sequence of Serratia marcescens subsp. sakuensis Strain K27, a Marine Bacterium Isolated from Sponge (Haliclona amboinensis).

scientific article published on 8 February 2018

Genome sequence and comparative genomics analysis of a Vibrio cholerae O1 strain isolated from a cholera patient in Malaysia

scientific article published on December 2012

Genome sequence of Acinetobacter baumannii AC12, a polymyxin-resistant strain isolated from Terengganu, Malaysia

scientific article published on November 2012

Genome sequence of Aureobasidium pullulans AY4, an emerging opportunistic fungal pathogen with diverse biotechnological potential

scientific article published on November 2012

Genome sequence of Citrobacter sp. strain A1, a dye-degrading bacterium

scientific article published on October 2012

Genome sequence of Enterococcus sp. strain C1, an azo dye decolorizer

scientific article published on October 2012

Genome sequence of Hydrogenophaga sp. strain PBC, a 4-aminobenzenesulfonate-degrading bacterium

scientific article published on September 2012

Genome sequence of Novosphingobium sp. strain Rr 2-17, a nopaline crown gall-associated bacterium isolated from Vitis vinifera L. grapevine

scientific article published on September 2012

Genome sequence of Pichia kudriavzevii M12, a potential producer of bioethanol and phytase

scientific article published on October 2012

Genome sequence of Roseomonas sp. strain B5, a quorum-quenching N-acylhomoserine lactone-degrading bacterium isolated from Malaysian tropical soil

scientific article

Genome sequence of multidrug-resistant Escherichia coli EC302/04, isolated from a human tracheal aspirate.

scientific article published on December 2012

Genome sequencing-assisted identification and the first functional validation of N-acyl-homoserine-lactone synthases from the Sphingomonadaceae family.

scientific article published on 30 August 2016

Global MLST of Salmonella Typhi Revisited in Post-genomic Era: Genetic Conservation, Population Structure, and Comparative Genomics of Rare Sequence Types.

scientific article published on 2 March 2016

Health and saliva microbiomes of a semi-urbanized indigenous tribe in Peninsular Malaysia

scientific article published on 11 February 2019

Helicobacter pylori Eradication Causes Perturbation of the Human Gut Microbiome in Young Adults

scientific article

High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall

scientific article published on 06 September 2018

High-Quality Draft Whole-Genome Sequences of Three Strains of Enterobacter Isolated from Jamaican Dioscorea cayenensis (Yellow Yam)

scientific article published on 13 March 2014

High-resolution bacterial 16S rRNA gene profile meta-analysis and biofilm status reveal common colorectal cancer consortia.

scientific article

High-throughput terrestrial biodiversity assessments: mitochondrial metabarcoding, metagenomics or metatranscriptomics?

scientific article published on 29 March 2018

Identification and Partial Characterization of a Novel UDP-N-Acetylenolpyruvoylglucosamine Reductase/UDP-N-Acetylmuramate:l-Alanine Ligase Fusion Enzyme from Verrucomicrobium spinosum DSM 4136(T).

scientific article published on 23 March 2016

Identification of an rsh gene from a Novosphingobium sp. necessary for quorum-sensing signal accumulation

scientific article

Identification of genes involved in the 4-aminobenzenesulfonate degradation pathway of Hydrogenophaga sp. PBC via transposon mutagenesis

scientific article published on 8 March 2011

Impact of dengue virus (DENV) co-infection on clinical manifestations, disease severity and laboratory parameters

scientific article (publication date: 11 August 2016)

Improved genome of type strain provides new taxonomic insight into genomospecies 4

scientific article published on 08 February 2019

In Situ Stimulation of Thiocyanate Biodegradation through Phosphate Amendment in Gold Mine Tailings Water.

scientific article

In-silico Taxonomic Classification of 373 Genomes Reveals Species Misidentification and New Genospecies within the Genus Pseudomonas

scientific article published on 12 July 2017

Insight Into the Microbial Co-occurrence and Diversity of 73 Grapevine (Vitis vinifera) Crown Galls Collected Across the Northern Hemisphere

scientific article published on 13 August 2019

Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian freshwater crayfishes ⬇️

scientific article published on 3 February 2014

Isolation, Identification, Whole-Genome Sequencing, and Annotation of Four Bacillus Species, B. anthracis RIT375, B. circulans RIT379, B. altitudinis RIT380, and B. megaterium RIT381, from Internal Stem Tissue of the Insulin Plant Costus igneus

scientific article published on 30 July 2015

L,L-diaminopimelate aminotransferase (DapL): a putative target for the development of narrow-spectrum antibacterial compounds.

scientific article

Mesozoic mitogenome rearrangements and freshwater mussel (Bivalvia: Unionoidea) macroevolution

scientific article published on 14 June 2019

Metabolomics and 16S rRNA sequencing of human colorectal cancers and adjacent mucosa

scientific article published in PLoS ONE

MicroRNA profiling of mouse liver in response to DENV-1 infection by deep sequencing

scientific article published on 22 April 2019

Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine

scientific article

Microbiome analysis of Pacific white shrimp gut and rearing water from Malaysia and Vietnam: implications for aquaculture research and management

scientific article published on 30 October 2018

MitoPhAST, a new automated mitogenomic phylogeny tool in the post-genomic era with a case study of 89 decapod mitogenomes including eight new freshwater crayfish mitogenomes

scientific article published on 23 February 2015

Mitochondrial genomes of the jungle crow Corvus macrorhynchos (Passeriformes: Corvidae) from shed feathers and a phylogenetic analysis of genus Corvus using mitochondrial protein-coding genes

scientific article published on 15 June 2015

Mitogenome data of Nycticebus coucang insularis Robinson, 1917 (Primate: Lorisidae).

scientific article published on 25 May 2019

Modulatory effects of condensed tannin fractions of different molecular weights from a Leucaena leucocephala hybrid on the bovine rumen bacterial community in vitro.

scientific article

More evolution underground: Accelerated mitochondrial substitution rate in Australian burrowing freshwater crayfishes (Decapoda: Parastacidae).

scientific article published on 28 September 2017

Nanopore Long-Read Guided Complete Genome Assembly of Hydrogenophaga intermedia, and Genomic Insights into 4-Aminobenzenesulfonate, p-Aminobenzoic Acid and Hydrogen Metabolism in the Genus Hydrogenophaga.

scientific article published on 4 October 2017

New Sequence Types of Vibrio parahaemolyticus Isolated from a Malaysian Aquaculture Pond, as Revealed by Whole-Genome Sequencing

scientific article published on 11 May 2017

ORDER within the chaos: Insights into phylogenetic relationships within the Anomura (Crustacea: Decapoda) from mitochondrial sequences and gene order rearrangements

scholarly article by Mun Hua Tan published in October 2018

One More Decade of Agrobacterium Taxonomy.

scientific article published on 3 March 2018

Phylogeography of red muntjacs reveals three distinct mitochondrial lineages

scientific article (publication date: 26 January 2017)

Pleistocene divergence across a mountain range and the influence of selection on mitogenome evolution in threatened Australian freshwater cod species

scientific article published on 17 February 2016

Purifying selection and genetic drift shaped Pleistocene evolution of the mitochondrial genome in an endangered Australian freshwater fish

scientific article published on 4 January 2017

Quorum-sensing signal production by Agrobacterium vitis strains and their tumor-inducing and tartrate-catabolic plasmids.

scientific article

Rapid genotyping of tilapia lake virus (TiLV) using Nanopore sequencing

scientific article published on 08 June 2021

Rapid recovery of nuclear and mitochondrial genes by genome skimming from Northern Hemisphere freshwater crayfish

article

Seawater recirculation through subducting sediments sustains a deeply buried population of sulfate-reducing bacteria

scientific article published on 25 November 2018

Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity.

scientific article

Temporal changes in arthropod activity in tropical anthropogenic forests.

scientific article published on 14 February 2018

The Influence of Modernization and Disease on the Gastric Microbiome of Orang Asli, Myanmars and Modern Malaysians

scientific article published on 14 June 2019

The complete genome sequence of EC1-UPM, a novel N4-like bacteriophage that infects Escherichia coli O78:K80

scientific article

The complete mitochondrial genome of Malayan Gaur (<i>Bos gaurus hubbacki</i>) from Peninsular Malaysia

scientific article published on 13 July 2019

The complete mitochondrial genome of the invasive house crow Corvus splendens (Passeriformes: Corvidae).

scientific article published on 18 June 2014

The complete mitogenome of Cherax monticola (Crustacea: Decapoda: Parastacidae), a large highland crayfish from New Guinea

scientific article

The complete mitogenome of purple mottled shore crab Cyclograpsus granulosus H. Milne-Edwards, 1853 (Crustacea: Decapoda: Grapsoidea).

scientific article published on 26 December 2014

The complete mitogenome of the Australian crayfishGeocharax gracilisClark 1936 (Crustacea: Decapoda: Parastacidae)

article

The complete mitogenome of the Australian freshwater shrimp Paratya australiensis Kemp, 1917 (Crustacea: Decapoda: Atyidae).

scientific article published on 19 February 2015

The complete mitogenome of the Australian land crayfish Engaeus lyelli (Clark 1936) (Crustacea: Decapoda: Parastacidae).

scientific article published on 14 April 2014

The complete mitogenome of the Australian spiny crayfish Euastacus yarraensis (McCoy, 1888) (Crustacea: Decapoda: Parastacidae)

article

The complete mitogenome of the Australian tadpole shrimp Triops australiensis (Spencer & Hall, 1895) (Crustacea: Branchiopoda: Notostraca).

scientific article published on 20 October 2014

The complete mitogenome of the Macquarie perch, Macquaria australasica Cuvier, 1830 (Teleostei: Percichthyidae).

scientific article published on 11 March 2014

The complete mitogenome of the Morton Bay bug Thenus orientalis (Lund, 1793) (Crustacea: Decapoda: Scyllaridae) from a cooked sample and a new mitogenome order for the Decapoda

scientific article published on 8 August 2014

The complete mitogenome of the Murray Cod, Maccullochella peelii (Mitchell, 1838) (Teleostei: Percichthyidae).

scientific article published on 29 April 2014

The complete mitogenome of the New Zealand freshwater crayfish Paranephrops planifrons White 1842 (Crustacea: Decapoda: Parastacidae).

scientific article published on 24 February 2015

The complete mitogenome of the Norway lobster Nephrops norvegicus (Linnaeus, 1758) (Crustacea: Decapoda: Nephropidae).

scientific article

The complete mitogenome of the bluespotted ribbontail ray Taeniura lymma (Forsskål, 1775) (Elasmobranchii: Myliobatiformes: Dasyatidae).

scientific article published on 19 February 2015

The complete mitogenome of the cow tail ray Pastinachus atrus (Macleay, 1883) (Elasmobranchii; Myliobatiformes; Dasyatidae).

scientific article published on 8 August 2014

The complete mitogenome of the crayfish Cherax glaber (Crustacea: Decapoda: Parastacidae)

scientific article published on 03 February 2014

The complete mitogenome of the endangered freshwater crayfish Cherax tenuimanus (Smith 1912) (Crustacea: Decapoda: Parastacidae).

scientific article published on 29 January 2015

The complete mitogenome of the endangered white-clawed freshwater crayfishAustropotamobius pallipes(Lereboullet, 1858) (Crustacea: Decapoda: Astacidae)

article published in 2015

The complete mitogenome of the freshwater crayfish Cherax cainii (Crustacea: Decapoda: Parastacidae).

scientific article published on 17 January 2014

The complete mitogenome of the ghost crab Ocypode ceratophthalmus (Pallas, 1772) (Crustacea: Decapoda: Ocypodidae).

scientific article published on 25 November 2014

The complete mitogenome of the giant clam Tridacna squamosa (Heterodonta: Bivalvia: Tridacnidae).

scientific article published on 4 February 2015

The complete mitogenome of the hermit crab Clibanarius infraspinatus (Hilgendorf, 1869), (Crustacea; Decapoda; Diogenidae) – a new gene order for the Decapoda

article

The complete mitogenome of the invasive spiny-cheek crayfish Orconectes limosus (Rafinesque, 1817) (Crustacea: Decapoda: Cambaridae).

scientific article

The complete mitogenome of the marine bivalve Lutraria rhynchaena Jonas 1844 (Heterodonta: Bivalvia: Mactridae).

scientific article published on 11 March 2014

The complete mitogenome of the minute mudskipper, Periophthalmus minutus Eggert, 1935 (Perciformes: Gobiidae: Oxudercinae).

scientific article published on 20 January 2015

The complete mitogenome of the moon crab Ashtoret lunaris (Forskal, 1775), (Crustacea; Decapoda; Matutidae).

scientific article published on 04 August 2014

The complete mitogenome of the porcelain crab Petrolisthes haswelli Miers, 1884 (Crustacea: Decapoda: Anomura).

scientific article published on 26 December 2014

The complete mitogenome of the red claw crayfish Cherax quadricarinatus (Von Martens, 1868) (Crustacea: Decapoda: Parastacidae).

scientific article published on 11 March 2014

The complete mitogenome of the river blackfish, Gadopsis marmoratus (Richardson, 1848) (Teleostei: Percichthyidae).

scientific article published on 20 October 2014

The complete mitogenome of the rock pool prawn Palaemon serenus (Heller, 1862) (Crustacea: Decapoda: Palaemonidae).

scientific article published on 19 February 2015

The complete mitogenome of the soldier crab Mictyris longicarpus (Latreille, 1806) (Crustacea: Decapoda: Mictyridae)

scientific article published on 25 November 2014

The complete mitogenome of the stone crab Myomenippe fornasinii (Bianconi, 1851) (Crustacea: Decapoda: Menippidae).

scientific article published on 8 August 2014

The complete mitogenome of the swimming crab Thalamita crenata (Rüppell, 1830) (Crustacea; Decapoda; Portunidae).

scientific article published on 4 August 2014

The complete mitogenome of the whale shark parasitic copepod Pandarus rhincodonicus norman, Newbound & Knott (Crustacea; Siphonostomatoida; Pandaridae)--a new gene order for the copepoda.

scientific article published on 29 April 2014

The first Margaritiferidae male (M-type) mitogenome: mitochondrial gene order as a potential character for determining higher-order phylogeny within Unionida (Bivalvia)

article

The male and female complete mitochondrial genome sequences of the Endangered freshwater mussel Potomida littoralis (Cuvier, 1798) (Bivalvia: Unionidae).

scientific article published on 19 August 2015

The male and female complete mitochondrial genomes of the threatened freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758) (Bivalvia: Margaritiferidae)

Transcriptome-Guided Identification of Carbohydrate Active Enzymes (CAZy) from the Christmas Island Red Crab, Gecarcoidea natalis and a Vote for the Inclusion of Transcriptome-Derived Crustacean CAZys in Comparative Studies

scientific article published on 11 July 2018

Two reads to rule them all: Nanopore long read-guided assembly of the iconic Christmas Island red crab, Gecarcoidea natalis (Pocock, 1888), mitochondrial genome and the challenges of AT-rich mitogenomes

scientific article published on 28 March 2019

Whole Genome Sequencing of the Asian Arowana (Scleropages formosus) Provides Insights into the Evolution of Ray-Finned Fishes

scientific article

Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family

scientific article published on January 2014

Whole genome sequencing of Rhodotorula mucilaginosa isolated from the chewing stick (Distemonanthus benthamianus): insights into Rhodotorula phylogeny, mitogenome dynamics and carotenoid biosynthesis.

scientific article

Whole-Genome Sequence and Classification of 11 Endophytic Bacteria from Poison Ivy (Toxicodendron radicans)

scientific article

Whole-Genome Sequences of Salmonella enterica subsp. enterica Serovar Typhimurium Strains TT6675 and TT9097 Employed in the Isolation and Characterization of a Giant Phage Mutant Collection.

scientific article published on 24 August 2017

Whole-Genome Sequences of Two Carbapenem-Resistant Klebsiella quasipneumoniae Strains Isolated from a Tertiary Hospital in Johor, Malaysia.

scientific article published on 10 August 2017

Whole-Genome Sequencing Reveals a New Genospecies of Methylobacterium sp. GXS13, Isolated from Vitis vinifera L. Xylem Sap.

scientific article

Whole-genome sequence of Cupriavidus sp. strain BIS7, a heavy-metal-resistant bacterium

scientific article published on November 2012

Whole-genome sequence of Enterobacter sp. strain SST3, an endophyte isolated from Jamaican sugarcane (Saccharum sp.) stalk tissue

scientific article published on November 2012

Whole-genome sequences of 13 endophytic bacteria isolated from shrub willow (salix) grown in geneva, new york

scientific article

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