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List of works by Morgane Thomas-Chollier

A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs.

scientific article

A naturally occurring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms.

scientific article

A non-tree-based comprehensive study of metazoan Hox and ParaHox genes prompts new insights into their origin and evolution

scientific article

Analyzing multiple data sets by interconnecting RSAT programs via SOAP Web services: an example with ChIP-chip data

scientific article

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors

scientific article published on 26 February 2015

Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni: comment ⬇️

scientific article

Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4+ T cell activation

scientific article published on 16 April 2019

Corrigendum: Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity

scientific article published on 22 November 2016

Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo

scientific article published on 09 December 2020

Histone Chaperone SSRP1 is Essential for Wnt Signaling Pathway Activity During Osteoblast Differentiation

scientific article published on 13 February 2016

HoxPred: automated classification of Hox proteins using combinations of generalised profiles

scientific article

Identification and characterization of DNA sequences that prevent glucocorticoid receptor binding to nearby response elements

scientific article published on 25 March 2016

Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements

scientific article published on 27 July 2017

Logical modeling of lymphoid and myeloid cell specification and transdifferentiation.

scientific article

Logical modelling of <i>in vitro</i> differentiation of human monocytes into dendritic cells unravels novel transcriptional regulatory interactions

scientific article published on 11 June 2021

Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria

scientific article published on 16 May 2019

Molecular insights into the origin of the Hox-TALE patterning system

scientific article published on 18 March 2014

Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics

scientific article (publication date: 2 March 2007)

Origin of Metazoan Patterning Systems and the Role of ANTP-Class Homeobox Genes

article

RSAT 2011: regulatory sequence analysis tools.

scientific article

RSAT 2015: Regulatory Sequence Analysis Tools.

scientific article published on 22 April 2015

RSAT 2018: regulatory sequence analysis tools 20th anniversary.

scientific article published in July 2018

RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections

RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections.

scientific article published on 07 June 2017

RSAT peak-motifs: fast extraction of transcription factor binding motifs from full-size ChIP-seq datasets

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

scientific article published on 8 December 2011

RSAT: regulatory sequence analysis tools

scientific article published on 21 May 2008

Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl

scientific article published on 31 August 2009

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation

scientific article

Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity

scientific article published on September 2016

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise

scientific article published on 14 November 2018

Theoretical and empirical quality assessment of transcription factor-binding motifs

scientific article

Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs

scientific article

Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules

scientific article

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