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List of works by Valentin Loux

A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins.

scientific article published on 20 March 2017

A unique in vivo experimental approach reveals metabolic adaptation of the probiotic Propionibacterium freudenreichii to the colon environment

scientific article

AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system

scientific article

Accumulation of intracellular glycogen and trehalose by Propionibacterium freudenreichii under conditions mimicking cheese ripening in the cold

scientific article published on 22 June 2012

Bacterial protein signals are associated with Crohn's disease

scientific article

Characterization of the insoluble proteome of Lactococcus lactis by SDS-PAGE LC-MS/MS leads to the identification of new markers of adaptation of the bacteria to the mouse digestive tract

scientific article published on 01 February 2010

CompaGB: An open framework for genome browsers comparison.

scientific article

Comparative genomics of first available bovine Anaplasma phagocytophilum genome obtained with targeted sequence capture.

scientific article

Complete Chromosome Sequence of Carnobacterium maltaromaticum LMA 28

scientific article published on 31 January 2013

Complete Genome Sequence of Flavobacteriumpsychrophilum Strain OSU THCO2-90, Used for Functional Genetic Analysis.

scientific article published on 23 February 2017

Complete Genome Sequence of Lactococcus lactis subsp. lactis A12, a Strain Isolated from Wheat Sourdough

scientific article published on 15 September 2016

Complete Genome Sequence of Leuconostoc citreum Strain NRRL B-742.

scientific article

Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water

scientific article

Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3

scientific article

Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777.

scientific article published on 08 July 2011

Complete genome sequence of the fish pathogen Flavobacterium branchiophilum

scientific article published on 16 September 2011

Complete genome sequence of the fish pathogen Flavobacterium psychrophilum

scientific article published on 24 June 2007

Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232.

scientific article

Complete genome sequence of the probiotic Lactobacillus casei strain BL23.

scientific article published on 26 March 2010

Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products

scientific article

Data from an integrative approach decipher the surface proteome of Propionibacterium freudenreichii.

scientific article

Draft Genome Sequence of Corynebacterium variabile Mu292, Isolated from Munster, a French Smear-Ripened Cheese

scientific article published on 21 July 2016

Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus CFL1, a Lactic Acid Bacterium Isolated from French Handcrafted Fermented Milk.

scientific article published on 3 March 2016

Draft Genome Sequence of Lactobacillus gigeriorum CRBIP 24.85 T , Isolated from a Chicken Crop ⬇️

scientific article published on November 1, 2012

Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine

scientific article published on 22 August 2013

Draft Genome Sequence of Lactobacillus pasteurii CRBIP 24.76T.

scientific article published on 22 August 2013

Draft Genome Sequences of 18 Psychrotolerant and 2 Thermotolerant Strains Representative of Particular Ecotypes in the Bacillus cereus Group

scientific article published on 02 February 2017

Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin

scientific article published on 22 August 2013

Draft Genome Sequences of Lactobacillus equicursoris CIP 110162T and Lactobacillus sp. Strain CRBIP 24.137, Isolated from Thoroughbred Racehorse Feces and Human Urine, Respectively

scientific article published on 22 August 2013

Exploration of sulfur metabolism in the yeast Kluyveromyces lactis.

scientific article published on 28 July 2011

Genome Sequence of "Candidatus Arthromitus" sp. Strain SFB-Mouse-NL, a Commensal Bacterium with a Key Role in Postnatal Maturation of Gut Immune Functions

scientific article

Genome Sequence of Corynebacterium casei UCMA 3821, Isolated from a Smear-Ripened Cheese ⬇️

scientific article published on February 1, 2012

Genome Sequence of Lactobacillus delbrueckii subsp. lactis CNRZ327, a Dairy Bacterium with Anti-Inflammatory Properties

scientific article

Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61.

scientific article published on 16 January 2014

Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis subsp. lactis TOMSC161, Isolated from a Nonscalded Curd Pressed Cheese.

scientific article

Genome Sequence of the Persistent Salmonella enterica subsp. enterica Serotype Senftenberg Strain SS209 ⬇️

scientific article published on May 1, 2012

Genome Sequences of Two Bovine Mastitis-Causing Escherichia coli Strains.

scientific article

Genome sequence of Lactococcus raffinolactis strain 4877, isolated from natural dairy starter culture

scientific article published on November 2012

Genome sequence of Leuconostoc pseudomesenteroides strain 4882, isolated from a dairy starter culture.

scientific article published on December 2012

Genome sequence of Staphylococcus equorum subsp. equorum Mu2, isolated from a French smear-ripened cheese

scientific article

Genome sequence of Weissella confusa LBAE C39-2, isolated from a wheat sourdough

scientific article published on March 2012

Genome sequence of the invasive Salmonella enterica subsp. enterica serotype enteritidis strain LA5. ⬇️

scientific article

Genome sequences of three Leuconostoc citreum strains, LBAE C10, LBAE C11, and LBAE E16, isolated from wheat sourdoughs

scientific article published on March 2012

Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses.

scientific article published on 31 July 2009

Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study

scientific article

Insights into the cyanosphere: capturing the respective metabolisms of cyanobacteria and chemotrophic bacteria in natural conditions?

scientific article published on 24 March 2021

Insyght: navigating amongst abundant homologues, syntenies and gene functional annotations in bacteria, it's that symbol!

scientific article published on 23 September 2014

Inventory of the GH70 enzymes encoded by Leuconostoc citreum NRRL B-1299 - identification of three novel α-transglucosylases

scientific article

Lactobacillus delbrueckii ssp. lactis and ssp. bulgaricus: a chronicle of evolution in action.

scientific article

Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: A reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group

scientific article

Mapping reads on a genomic sequence: an algorithmic overview and a practical comparative analysis

scientific article published on 16 April 2012

Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

scientific article published on 15 April 2015

New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration

scientific article

Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach

scientific article published in 2023

Overview of a surface-ripened cheese community functioning by meta-omics analyses

scientific article

Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20).

scientific article published on 14 January 2016

Prediction of surface exposed proteins in Streptococcus pyogenes, with a potential application to other Gram-positive bacteria

scientific article published in January 2009

Surface proteins of Propionibacterium freudenreichii are involved in its anti-inflammatory properties.

scientific article

Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT.

scientific article published on 24 November 2015

Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems

scientific article published on 13 September 2014

The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese

scientific article

The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications

scientific article

The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution

scholarly article

The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K.

scientific article

Towards a semi-automatic functional annotation tool based on decision-tree techniques

scientific article

Transcriptomic analysis of Staphylococcus xylosus in the presence of nitrate and nitrite in meat reveals its response to nitrosative stress

scientific article

Whole-Genome Sequencing of Seven Strains of Staphylococcus lugdunensis Allows Identification of Mobile Genetic Elements

scientific article

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