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List of works by Pier Luigi Buttigieg

A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses

scientific article

Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability

scientific article published on 3 October 2023

Aligning Standards Communities: Sustainable Darwin Core MIxS Interoperability

scientific article published in 2021

Applying graph theoretic approaches to microbial metagenomes

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

scientific article (publication date: 5 February 2014)

Biogeographic patterns of bacterial microdiversity in Arctic deep-sea sediments (HAUSGARTEN, Fram Strait).

scientific article published on January 2014

CDinFusion--submission-ready, on-line integration of sequence and contextual data

scientific article

Cathepsin B is essential for regeneration of scratch-wounded normal human epidermal keratinocytes

scientific article published on 24 July 2007

Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions

scientific article published on 03 December 2018

Clarifying concepts and terms in biodiversity informatics

scientific article

Comparison of Two 16S rRNA Primers (V3-V4 and V4-V5) for Studies of Arctic Microbial Communities

scientific article published on 16 February 2021

Diazotroph Diversity in the Sea Ice, Melt Ponds, and Surface Waters of the Eurasian Basin of the Central Arctic Ocean

scientific article

Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities

scientific article published on 27 January 2020

EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation

scientific article (publication date: 2016)

Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes

scientific article

Emerging semantics to link phenotype and environment

scientific article

FAIR.ReD: Semantic knowledge graph infrastructure for the life sciences

scientific article published on 18 June 2019

FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration

scientific article published on 18 December 2018

Gene expression and ultrastructure of meso- and thermophilic methanotrophic consortia

scientific article published on 22 February 2018

Hydrographic fronts shape productivity, nitrogen fixation, and microbial community composition in the southern Indian Ocean and the Southern Ocean

scientific article published in 2021

Integrating ABCD and DarwinCore: Toward a better foundation for biodiversity information standards

scientific article published in 2019

Mainstreaming Molecular Biodiversity: A call for a unified and interoperable framework

scientific article published on 25 June 2019

Marine microbes in 4D-using time series observation to assess the dynamics of the ocean microbiome and its links to ocean health

scientific article published on 21 February 2018

Meeting report: advancing practical applications of biodiversity ontologies

scientific article

Megx.net: integrated database resource for marine ecological genomics.

scientific article

MetaBar - a tool for consistent contextual data acquisition and standards compliant submission

scientific article

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

scientific article

Modelling plankton ecosystems in the meta-omics era. Are we ready?

scientific article

MyOSD 2014: Evaluating Oceanographic Measurements Contributed by Citizen Scientists in Support of Ocean Sampling Day

scientific article

New molecular methods to assess biodiversity. Potentials and pitfalls of DNA metabarcoding: a workshop report

article by Maria Kahlert et al published 8 August 2019 in Research Ideas and Outcomes

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

scientific article published on 13 October 2021

Perspectives on presentation and pedagogy in aid of bioinformatics education ⬇️

scientific article published on August 19, 2010

Quantifying the effect of environment stability on the transcription factor repertoire of marine microbes

scientific article published on 7 September 2011

Recurrent patterns of microdiversity in a temperate coastal marine environment.

scientific article published on 24 October 2017

Semantic Interoperability Solutions for the Essential Variables: Focus on biodiversity

scientific article

Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies

scientific article

Streamlined Conversion of Omics Metadata into Manuscript Facilitates Publishing and Reuse of Omics Data

scientific article published on 28 September 2020

The Bari Manifesto: An interoperability framework for essential biodiversity variables

scientific article published in 2019

The Global Omics Observatory Network: Shaping standards for long-term molecular observation

scientific article published in 2019

The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems

scientific article published on 25 September 2020

The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data

scientific article

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation

scientific article

The environment ontology: contextualising biological and biomedical entities

article

The founding charter of the Omic Biodiversity Observation Network (Omic BON)

scientific article published in 2022

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Towards an Ontology of Comparative Biogeography: New insights into the semantics of biodiversity conservation

scientific article published in 2019

Transforming the study of organisms: Phenomic data models and knowledge bases

scientific article published on 24 November 2020

Ultra-high-resolution paleoenvironmental records via direct laser-based analysis of lipid biomarkers in sediment core samples

scientific article

Unifying European Biodiversity Informatics (BioUnify)

scientific article published on 15 January 2016

Unifying the known and unknown microbial coding sequence space

scientific article published on 31 March 2022

Value, but high costs in post-deposition data curation

scientific article

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