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List of works by Shogo Nakano

AirID, a novel proximity biotinylation enzyme, for analysis of protein-protein interactions

scientific article published on 11 May 2020

Benchmark Analysis of Native and Artificial NAD+-Dependent Enzymes Generated by a Sequence-Based Design Method with or without Phylogenetic Data

scientific article published on 04 June 2018

Binding of Catechins to Staphylococcal Enterotoxin A

scientific article published on 09 May 2018

Binding of NAD+ and L-Threonine Induces Stepwise Structural and Flexibility Changes in Cupriavidus necator L-Threonine Dehydrogenase

scientific article

Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining

scientific article published on 04 August 2021

Competitive Binding Assay with an Umbelliferone-Based Fluorescent Rexinoid for Retinoid X Receptor Ligand Screening

scientific article published on 18 September 2019

Computational Molecular Docking and X-ray Crystallographic Studies of Catechins in New Drug Design Strategies

scientific article published on 13 August 2018

Convenient Retinoid X Receptor Binding Assay Based on Fluorescence Change of the Antagonist NEt-C343

scientific article published on 30 December 2020

Development of an Analysis Toolkit, AnalysisFMO, to Visualize Interaction Energies Generated by Fragment Molecular Orbital Calculations

scientific article published on 20 December 2018

Discovery of a "Gatekeeper" Antagonist that Blocks Entry Pathway to Retinoid X Receptors (RXRs) without Allosteric Ligand Inhibition in Permissive RXR Heterodimers

scientific article published on 24 December 2020

Dual conformation of the ligand induces the partial agonistic activity of retinoid X receptor α (RXRα)

scientific article published on 21 December 2018

Elucidation of Molecular Mechanism of a Selective PPARα Modulator, Pemafibrate, through Combinational Approaches of X-ray Crystallography, Thermodynamic Analysis, and First-Principle Calculations

scientific article published on 06 January 2020

Following the Evolutionary Track of a Highly Specific l-Arginine Oxidase by Reconstruction and Biochemical Analysis of Ancestral and Native Enzymes

scientific article published on 30 May 2019

Improvement of ST0452 GlcNAc-1-phosphate uridyltransferase activity by the cooperative effect of two single mutations identified through structure-based protein engineering

scientific article published on 30 November 2018

In Silico Identification for α-Amino-ε-Caprolactam Racemases by Using Information on the Structure and Function Relationship

scientific article published on 6 May 2015

In Vitro and In Silico Studies of the Molecular Interactions of Epigallocatechin-3-O-gallate (EGCG) with Proteins That Explain the Health Benefits of Green Tea.

scientific article published on 28 May 2018

Kinetics-Based Structural Requirements of Human Immunoglobulin G Binding Peptides

scientific article published on 28 August 2019

Origin of Stereoselectivity and Substrate/Ligand Recognition in an FAD-Dependent R-Selective Amine Oxidase.

scientific article published on 20 September 2016

Porcine kidney d-amino acid oxidase-derived R-amine oxidases with new substrate specificities

scientific article published on 05 August 2020

Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase

scientific article published on 9 October 2017

Protein evolution analysis of S-hydroxynitrile lyase by complete sequence design utilizing the INTMSAlign software

scientific article published on 3 February 2015

Rational identification of aggregation hotspots based on secondary structure and amino acid hydrophobicity

scientific article published on 25 August 2017

Structural and computational analysis of peptide recognition mechanism of class-C type penicillin binding protein, alkaline D-peptidase from Bacillus cereus DF4-B.

scientific article published on 15 September 2015

Structural and functional analysis of hydroxynitrile lyase from Baliospermum montanum with crystal structure, molecular dynamics and enzyme kinetics

scientific article

Structure-function relationship of assimilatory nitrite reductases from the leaf and root of tobacco based on high-resolution structures

scientific article

Tailoring D-amino acid oxidase from the pig kidney to R-stereoselective amine oxidase and its use in the deracemization of α-methylbenzylamine

scientific article

The hydrophobic core of FliG domain II is the stabilizer in the Salmonella flagellar motor

scientific article published on 9 August 2012

The reductive reaction mechanism of tobacco nitrite reductase derived from a combination of crystal structures and ultraviolet-visible microspectroscopy

scientific article

X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity

scientific article

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