List of works - David E. Crowley

16S rDNA fingerprinting of rhizosphere bacterial communities associated with healthy and Phytophthora infected avocado roots

scientific article published on 01 April 2001

Abundance, composition and activity of ammonia oxidizer and denitrifier communities in metal polluted rice paddies from South China

scientific article

Accelerated decolorization of structurally different azo dyes by newly isolated bacterial strains

scientific article published on 15 December 2007

Analysis of bacterial community composition by oligonucleotide fingerprinting of rRNA genes

scientific article

Anescherichia colibioassay of individual siderophores in soil

article published in 1988

Application of Organic Amendments To Reduce Volatile Pesticide Emissions from Soil

article

Arbuscular mycorrhizal infection changes the bacterial 16 S rDNA community composition in the rhizosphere of maize

scientific article

Artificial neural network modeling of microbial community structures in the Atlantic Forest of Brazil

article

Assessing the soil quality of long-term reclaimed wastewater-irrigated cropland

article by Z Wang et al published June 2003 in Geoderma

Assimilable organic carbon (AOC) in soil water extracts using Vibrio harveyi BB721 and its implication for microbial biomass.

scientific article

Atrazine dealkylation on a manganese oxide surface

Bacterial Diversity in Tree Canopies of the Atlantic Forest

Bacterial community assemblages associated with the phyllosphere, dermosphere, and rhizosphere of tree species of the Atlantic forest are host taxon dependent

scientific article

Bacterial diversity and composition in major fresh produce growing soils affected by physiochemical properties and geographic locations.

scientific article

Bacterial diversity in tree canopies of the Atlantic forest.

scientific article

Bacterial diversity of terra preta and pristine forest soil from the Western Amazon

Bacterial functional redundancy along a soil reclamation gradient

scientific article

Biochar effects on soil biota – A review

article

Biochar has no effect on soil respiration across Chinese agricultural soils

scientific article

Biodegradation of diphenyl ether and transformation of selected brominated congeners by Sphingomonas sp. PH-07.

scientific article published on 11 August 2007

Biodegradation potential of pure and mixed bacterial cultures for removal of 4-nitroaniline from textile dye wastewater

scientific article published on 11 December 2008

Bioremediation of atrazine-contaminated soil by repeated applications of atrazine-degrading bacteria

scientific article published on June 1999

Bioremediation of polychlorinated biphenyl-contaminated soil using carvone and surfactant-grown bacteria.

scientific article

Biosorption of the metal-complex dye Acid Black 172 by live and heat-treated biomass of Pseudomonas sp. strain DY1: kinetics and sorption mechanisms

scientific article

Biostimulation of PAH degradation with plants containing high concentrations of linoleic acid

scientific article

Changes in microbial biomass and the metabolic quotient with biochar addition to agricultural soils: A Meta-analysis

article

Characterization of Culturable PAH and BTEX Degrading Bacteria from Heavy Oil of the Rancho La Brea Tarpits

article

Characterization of Organic Acids Recovered from Rhizosphere of Corn Grown on Biosolids‐Treated Medium

article

Chelation effects on the iron reduction and uptake by low‐iron stress tolerant and non‐tolerant citrus rootstocks

Closing the loop on organic waste management: biochar for agricultural land application and climate change mitigation

scientific article published in June 2010

Comparison of PCR-DGGE and selective plating methods for monitoring the dynamics of a mixed culture population in synthetic brewery wastewater

scientific article

Comprehensive Analysis of Organic Ligands in Whole Root Exudates Using Nuclear Magnetic Resonance and Gas Chromatography–Mass Spectrometry ⬇️

scientific article published on August 15, 1997

Comprehensive chemical profiling of gramineous plant root exudates using high-resolution NMR and MS.

scientific article

Computational identification and analysis of the key biosorbent characteristics for the biosorption process of reactive black 5 onto fungal biomass

scientific article

Contribution of earthworms to PCB bioremediation

Contribution of ethylamine degrading bacteria to atrazine degradation in soils

scientific article published in November 2006

Cooperative catabolic pathways within an atrazine-degrading enrichment culture isolated from soil

scientific article

Coupling between Pentachlorophenol Dechlorination and Soil Redox As Revealed by Stable Carbon Isotope, Microbial Community Structure, and Biogeochemical Data

scientific article

Culture-independent investigation of the microbiome associated with the nematode Acrobeloides maximus

scientific article

DNA extraction methodology for biochar-amended sand and clay

Decline in topsoil microbial quotient, fungal abundance and C utilization efficiency of rice paddies under heavy metal pollution across South China.

scientific article

Decolorization of Reactive Black-5 by Shewanella sp. in the Presence of Metal Ions and Salts

scientific article published on 01 July 2015

Decolorization of azo dyes by Shewanella sp. under saline conditions

scientific article published on 7 May 2008

Detoxification of azo dyes by bacterial oxidoreductase enzymes.

scientific article published on 10 February 2015

Differential enantioselective transformation of atropisomeric polychlorinated biphenyls by multiple bacterial strains with different inducing compounds

scientific article

Direct detection of rhizosphere-colonizing Pseudomonas sp. using an Escherichia coli rRNA promoter in a Tn7-lux system

scholarly article by M Brennerova et al published September 1994 in FEMS Microbiology Ecology

Does metal pollution matter with C retention by rice soil?

scientific article

Draft genome sequence of Rahnella aquatilis strain HX2, a plant growth-promoting rhizobacterium isolated from vineyard soil in Beijing, China ⬇️

scientific article published on December 1, 2012

Duration of lag phase of Pseudomonas fluorescens 2-79RL starved in isolation or in the presence of soil microorganisms

Dynamic changes in nahAc gene copy numbers during degradation of naphthalene in PAH-contaminated soils.

scientific article

Effect of Repetitive Applications of the Biocontrol Bacterium Pseudomonas putida 06909-rif/nal on Citrus Soil Microbial Communities

scientific article

Effect of activated carbon on microbial bioavailability of phenanthrene in soils

scientific article published in November 2009

Effect of biochar amendment on yield and methane and nitrous oxide emissions from a rice paddy from Tai Lake plain, China

article

Effect of planting covers on herbicide persistence in landscape soils.

scientific article published on June 2003

Effects of biochar and Arbuscular mycorrhizae on bioavailability of potentially toxic elements in an aged contaminated soil

scientific article published on 27 August 2015

Effects of cowpea (Vigna unguiculata) root mucilage on microbial community response and capacity for phenanthrene remediation.

scientific article published on 13 April 2015

Exotic annuals reduce soil heterogeneity in coastal sage scrub soil chemical and biological characteristics

Extractable nitrogen and microbial community structure respond to grassland restoration regardless of historical context and soil composition

scientific article

Genome Sequence Analysis of the Naphthenic Acid Degrading and Metal Resistant Bacterium Cupriavidus gilardii CR3.

scientific article published on 24 August 2015

Geochemical Aspects of Phytosiderophore‐Promoted Iron Acquisition by Plants

article

Global gene expression responses to cadmium toxicity in Escherichia coli

scientific article

Growth promotion of the edible fungus Pleurotus ostreatus by fluorescent pseudomonads

scientific article published in January 2003

Hydrocarbon emissions from natural vegetation in California's South Coast Air Basin

Identification of β-propeller phytase-encoding genes in culturable Paenibacillus and Bacillus spp. from the rhizosphere of pasture plants on volcanic soils.

scientific article published on 12 November 2010

Impact of fumigants on soil microbial communities.

scientific article

Impact of the plant rhizosphere and augmentation on remediation of polychlorinated biphenyl contaminated soil

scientific article published in September 2003

Impacts of Metals and Metalloids on Soil Microbial Diversity and Ecosystem Function

scholarly article by David E. Crowley published in January 2008

Influence of bacterial communities based on 454-pyrosequencing on the survival of Escherichia coli O157:H7 in soils.

scientific article

Inoculum banding, inoculum age and fertilization rate in relation to production of container-grown shortleaf pine seedlings mycorrhizal with Pisolithus tinctorius

Interactions of earthworms with indigenous and bioaugmented PCB-degrading bacteria

scientific article published in September 2002

Interactions of earthworms with indigenous and bioaugmented PCB-degrading bacteria

scientific article published in 2002

Iron Stress and Pyoverdin Production by a Fluorescent Pseudomonad in the Rhizosphere of White Lupine (Lupinus albus L.) and Barley (Hordeum vulgare L.).

scientific article

Iron nutrition of cucumber and maize: Effect of Pseudomonas putida YC 3 and its siderophore

Isolation and characterization of pyrene metabolizing microbial consortia from the plant rhizoplane

scientific article

Isolation of biosurfactant-producing bacteria from the Rancho La Brea Tar Pits

scientific article published in August 2012

Leaf and root responses to iron deficiency in avocado1

article

Mechanisms of Heavy Metal Sequestration in Soils: Plant-Microbe Interactions and Organic Matter Aging

article

Mechanisms of iron acquisition from siderophores by microorganisms and plants

article

Microarray analysis of bacterial diversity and distribution in aggregates from a desert agricultural soil

article

Microbial Siderophores in the Plant Rhizosphere

article

Microbial diversity along a transect of agronomic zones

scientific article published in March 2002

Microbial diversity along a transect of agronomic zones

scientific article published in 2002

Microbial diversity in natural asphalts of the Rancho La Brea Tar Pits

scientific article (publication date: July 2007)

Microbial phyllosphere populations are more complex than previously realized.

scholarly article

Microbial transformation of pyrethroid insecticides in aqueous and sediment phases

scientific article published on January 2004

Microcosm enrichment of 1,3-dichloropropene-degrading soil microbial communities in a compost-amended soil.

scientific article

Microorganisms form exocellular structures, trophosomes, to facilitate biodegradation of oil in aqueous media

article

Modifications of the cell wall of yeasts grown on hexadecane and under starvation conditions

scientific article

Molecular Basis of a Bacterial Consortium: Interspecies Catabolism of Atrazine.

scientific article

Molecular basis of a bacterial consortium: interspecies catabolism of atrazine

scientific article

Nested PCR bias: a case study of Pseudomonas spp. in soil microcosms

scientific article published on 16 February 2010

Nitrogen deposition effects on carbon storage and fungal:bacterial ratios in coastal sage scrub soils of southern California

scientific article published on 29 October 2009

Normalization of soil DNA extraction for accurate quantification of target genes by real-time PCR and DGGE.

scientific article published in April 2005

PLANT RHIZOSPHERE EFFECTS ON METAL MOBILIZATION AND TRANSPORT

article

Persistence of Escherichia coli O157 and non-O157 strains in agricultural soils.

scientific article published on 5 June 2014

Persistence of Escherichia coli O157:H7 and its mutants in soils

scientific article

Persistence of Escherichia coli O157:H7 in major leafy green producing soils.

scientific article published on 18 October 2012

Phyllosphere Metaproteomes of Trees from the Brazilian Atlantic Forest Show High Levels of Functional Redundancy

scientific article published on 16 November 2016

Phylogenetic diversity of fluorescent pseudomonads in agricultural soils from Korea

scientific article published on 01 January 2005

Physiological activity of a bioluminescent Pseudomonas fluorescens (strain 2–79) in the rhizosphere of mycorrhizal and non-mycorrhizal pepper (Capsicum annuum L.)

scholarly article by Petra Marschner et al published July 1996 in Soil Biology and Biochemistry

Phytate addition to soil induces changes in the abundance and expression of Bacillus β-propeller phytase genes in the rhizosphere

scientific article

Phytosiderophore release in relation to micronutrient metal deficiencies in barley

scholarly article by Dirk Gries et al published 1995 in Plant and Soil

Phytosiderophores decrease iron stress and pyoverdine production of Pseudomonas fluorescens PF-5 (pvd-inaZ)

article

Phytosiderophores influence on cadmium mobilization and uptake by wheat and barley plants

scientific article published in November 2001

Plant Rhizosphere Effects on Metal Mobilization and Transport

article

Plant compounds that induce polychlorinated biphenyl biodegradation by Arthrobacter sp. strain B1B.

scientific article

Plant growth-promoting rhizobacteria associated with ancient clones of creosote bush (Larrea tridentata).

scientific article published on 26 May 2012

Pyrene effects on rhizoplane bacterial communities

scientific article published in September 2009

Regulation of Microbial Processes by Soil pH

Repeated application of carvone-induced bacteria to enhance biodegradation of polychlorinated biphenyls in soil.

scientific article published in October 1998

Rhizosphere microbial community structure in relation to root location and plant iron nutritional status.

scientific article

Root System Response to Flooding in Three Desert Shrub Species

article

Root colonization and iron nutritional status of a Pseudomonas fluorescens in different plant species

article published in 1997

Root exudation and physiological status of a root-colonizing fluorescent pseudomonad in mycorrhizal and non-mycorrhizal pepper (Capsicum annuum L.)

article

Root responses of sterile‐grown onion plants to iron deficiency1

article

Secondary plant metabolites in phytoremediation and biotransformation

scientific article

Siderophore Involvement in Plant Iron Nutrition

article

Soil and plant specific effects on bacterial community composition in the rhizosphere

article

Study of phenanthrene utilizing bacterial consortia associated with cowpea (Vigna unguiculata) root nodules

scientific article published on 20 January 2015

The endophytic bacterium Serratia sp. PW7 degrades pyrene in wheat

scientific article published on 12 January 2017

The stability of textile azo dyes in soil and their impact on microbial phospholipid fatty acid profiles

scientific article published on 11 June 2015

Topological data analysis of Escherichia coli O157:H7 and non-O157 survival in soils.

scientific article

Utilization of Microbial Siderophores in Iron Acquisition by Oat

scientific article published on 01 July 1988

Yeast extract promotes decolorization of azo dyes by stimulating azoreductase activity in Shewanella sp. strain IFN4.

scientific article published on 7 October 2015

Zinc deficiency-induced phytosiderophore release by the Triticaceae is not consistently expressed in solution culture

scientific article published on June 2000

List of works by David E. Crowley

16S rDNA fingerprinting of rhizosphere bacterial communities associated with healthy and Phytophthora infected avocado roots

Abundance, composition and activity of ammonia oxidizer and denitrifier communities in metal polluted rice paddies from South China

Accelerated decolorization of structurally different azo dyes by newly isolated bacterial strains

Analysis of bacterial community composition by oligonucleotide fingerprinting of rRNA genes

Anescherichia colibioassay of individual siderophores in soil

Application of Organic Amendments To Reduce Volatile Pesticide Emissions from Soil

Arbuscular mycorrhizal infection changes the bacterial 16 S rDNA community composition in the rhizosphere of maize

Artificial neural network modeling of microbial community structures in the Atlantic Forest of Brazil

Assessing the soil quality of long-term reclaimed wastewater-irrigated cropland

Assimilable organic carbon (AOC) in soil water extracts using Vibrio harveyi BB721 and its implication for microbial biomass.

Atrazine dealkylation on a manganese oxide surface

Bacterial Diversity in Tree Canopies of the Atlantic Forest

Bacterial Diversity in Tree Canopies of the Atlantic Forest

Bacterial community assemblages associated with the phyllosphere, dermosphere, and rhizosphere of tree species of the Atlantic forest are host taxon dependent

Bacterial diversity and composition in major fresh produce growing soils affected by physiochemical properties and geographic locations.

Bacterial diversity in tree canopies of the Atlantic forest.

Bacterial diversity of terra preta and pristine forest soil from the Western Amazon

Bacterial functional redundancy along a soil reclamation gradient

Biochar effects on soil biota – A review

Biochar has no effect on soil respiration across Chinese agricultural soils

Biodegradation of diphenyl ether and transformation of selected brominated congeners by Sphingomonas sp. PH-07.

Biodegradation potential of pure and mixed bacterial cultures for removal of 4-nitroaniline from textile dye wastewater

Bioremediation of atrazine-contaminated soil by repeated applications of atrazine-degrading bacteria

Bioremediation of polychlorinated biphenyl-contaminated soil using carvone and surfactant-grown bacteria.

Biosorption of the metal-complex dye Acid Black 172 by live and heat-treated biomass of Pseudomonas sp. strain DY1: kinetics and sorption mechanisms

Biostimulation of PAH degradation with plants containing high concentrations of linoleic acid

Changes in microbial biomass and the metabolic quotient with biochar addition to agricultural soils: A Meta-analysis

Characterization of Culturable PAH and BTEX Degrading Bacteria from Heavy Oil of the Rancho La Brea Tarpits

Characterization of Organic Acids Recovered from Rhizosphere of Corn Grown on Biosolids‐Treated Medium

Chelation effects on the iron reduction and uptake by low‐iron stress tolerant and non‐tolerant citrus rootstocks

Closing the loop on organic waste management: biochar for agricultural land application and climate change mitigation

Comparison of PCR-DGGE and selective plating methods for monitoring the dynamics of a mixed culture population in synthetic brewery wastewater

Comprehensive Analysis of Organic Ligands in Whole Root Exudates Using Nuclear Magnetic Resonance and Gas Chromatography–Mass Spectrometry ⬇️

Comprehensive chemical profiling of gramineous plant root exudates using high-resolution NMR and MS.

Computational identification and analysis of the key biosorbent characteristics for the biosorption process of reactive black 5 onto fungal biomass

Contribution of earthworms to PCB bioremediation

Contribution of ethylamine degrading bacteria to atrazine degradation in soils

Cooperative catabolic pathways within an atrazine-degrading enrichment culture isolated from soil

Coupling between Pentachlorophenol Dechlorination and Soil Redox As Revealed by Stable Carbon Isotope, Microbial Community Structure, and Biogeochemical Data

Culture-independent investigation of the microbiome associated with the nematode Acrobeloides maximus

DNA extraction methodology for biochar-amended sand and clay

Decline in topsoil microbial quotient, fungal abundance and C utilization efficiency of rice paddies under heavy metal pollution across South China.

Decolorization of Reactive Black-5 by Shewanella sp. in the Presence of Metal Ions and Salts

Decolorization of azo dyes by Shewanella sp. under saline conditions

Detoxification of azo dyes by bacterial oxidoreductase enzymes.

Differential enantioselective transformation of atropisomeric polychlorinated biphenyls by multiple bacterial strains with different inducing compounds

Direct detection of rhizosphere-colonizing Pseudomonas sp. using an Escherichia coli rRNA promoter in a Tn7-lux system

Does metal pollution matter with C retention by rice soil?

Draft genome sequence of Rahnella aquatilis strain HX2, a plant growth-promoting rhizobacterium isolated from vineyard soil in Beijing, China ⬇️

Duration of lag phase of Pseudomonas fluorescens 2-79RL starved in isolation or in the presence of soil microorganisms

Dynamic changes in nahAc gene copy numbers during degradation of naphthalene in PAH-contaminated soils.

Effect of Repetitive Applications of the Biocontrol Bacterium Pseudomonas putida 06909-rif/nal on Citrus Soil Microbial Communities

Effect of activated carbon on microbial bioavailability of phenanthrene in soils

Effect of biochar amendment on yield and methane and nitrous oxide emissions from a rice paddy from Tai Lake plain, China

Effect of planting covers on herbicide persistence in landscape soils.

Effects of biochar and Arbuscular mycorrhizae on bioavailability of potentially toxic elements in an aged contaminated soil

Effects of cowpea (Vigna unguiculata) root mucilage on microbial community response and capacity for phenanthrene remediation.

Exotic annuals reduce soil heterogeneity in coastal sage scrub soil chemical and biological characteristics

Extractable nitrogen and microbial community structure respond to grassland restoration regardless of historical context and soil composition

Genome Sequence Analysis of the Naphthenic Acid Degrading and Metal Resistant Bacterium Cupriavidus gilardii CR3.

Geochemical Aspects of Phytosiderophore‐Promoted Iron Acquisition by Plants

Global gene expression responses to cadmium toxicity in Escherichia coli

Growth promotion of the edible fungus Pleurotus ostreatus by fluorescent pseudomonads

Hydrocarbon emissions from natural vegetation in California's South Coast Air Basin

Identification of β-propeller phytase-encoding genes in culturable Paenibacillus and Bacillus spp. from the rhizosphere of pasture plants on volcanic soils.

Impact of fumigants on soil microbial communities.

Impact of the plant rhizosphere and augmentation on remediation of polychlorinated biphenyl contaminated soil

Impacts of Metals and Metalloids on Soil Microbial Diversity and Ecosystem Function

Influence of bacterial communities based on 454-pyrosequencing on the survival of Escherichia coli O157:H7 in soils.

Inoculum banding, inoculum age and fertilization rate in relation to production of container-grown shortleaf pine seedlings mycorrhizal with Pisolithus tinctorius

Interactions of earthworms with indigenous and bioaugmented PCB-degrading bacteria

Interactions of earthworms with indigenous and bioaugmented PCB-degrading bacteria

Iron Stress and Pyoverdin Production by a Fluorescent Pseudomonad in the Rhizosphere of White Lupine (Lupinus albus L.) and Barley (Hordeum vulgare L.).

Iron nutrition of cucumber and maize: Effect of Pseudomonas putida YC 3 and its siderophore

Isolation and characterization of pyrene metabolizing microbial consortia from the plant rhizoplane

Isolation of biosurfactant-producing bacteria from the Rancho La Brea Tar Pits

Leaf and root responses to iron deficiency in avocado1

Mechanisms of Heavy Metal Sequestration in Soils: Plant-Microbe Interactions and Organic Matter Aging

Mechanisms of iron acquisition from siderophores by microorganisms and plants