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List of works by Joseph Deasy

4D-CT motion estimation using deformable image registration and 5D respiratory motion modeling.

scientific article published in October 2008

A 'quad-phantom' film dosimeter for use as a multi-planar verification tool for PRESAGE/optical-CT.

scientific article published on January 2010

A Bayesian network approach for modeling local failure in lung cancer.

scientific article

A Combination of Radiation and the Hypoxia-Activated Prodrug Evofosfamide (TH-302) is Efficacious against a Human Orthotopic Pancreatic Tumor Model.

scientific article published on 21 July 2017

A Comparison of Cytotoxicity after Whole- or Partial-Cell Irradiation with Synchrotron-Produced Ultrasoft X Rays

scientific article published on 01 November 1998

A Factor Analysis Approach for Clustering Patient Reported Outcomes

scientific article

A Validated Prediction Model for Overall Survival From Stage III Non-Small Cell Lung Cancer: Toward Survival Prediction for Individual Patients

scientific article published on 30 April 2015

A Voxel-Based Approach to Explore Local Dose Differences Associated With Radiation-Induced Lung Damage

scientific article published on 7 May 2016

A bioinformatics approach for biomarker identification in radiation-induced lung inflammation from limited proteomics data

scientific article

A bioinformatics filtering strategy for identifying radiation response biomarker candidates

scientific article

A case-control study using motion-inclusive spatial dose-volume metrics to account for genito-urinary toxicity following high-precision radiotherapy for prostate cancer

article

A comparison of Monte Carlo dose calculation denoising techniques

scientific article published on 17 February 2005

A fast inverse consistent deformable image registration method based on symmetric optical flow computation

scientific article published on 14 October 2008

A fast inverse consistent deformable image registration method based on symmetric optical flow computation

A geometric atlas to predict lung tumor shrinkage for radiotherapy treatment planning

scientific article published on 10 January 2017

A literature mining-based approach for identification of cellular pathways associated with chemoresistance in cancer

scientific article published on 27 July 2015

A microRNA expression signature for cervical cancer prognosis

scientific article

A multiple-image-based method to evaluate the performance of deformable image registration in the pelvis

scientific article published on 29 July 2016

A nomogram to predict radiation pneumonitis, derived from a combined analysis of RTOG 9311 and institutional data

scientific article

A novel representation of inter-site tumour heterogeneity from pre-treatment computed tomography textures classifies ovarian cancers by clinical outcome

scientific article published on 13 March 2017

A proof that uniform dose gives the greatest TCP for fixed integral dose in the planning target volume

scientific article published on 01 November 1994

A prospective study of differences in duodenum compared to remaining small bowel motion between radiation treatments: implications for radiation dose escalation in carcinoma of the pancreas

scientific article

A prospective study of salivary function sparing in patients with head-and-neck cancers receiving intensity-modulated or three-dimensional radiation therapy: initial results

scientific article published on 01 March 2001

A proton dose calculation algorithm for conformal therapy simulations based on Molière's theory of lateral deflections ⬇️

scientific article published on April 1, 1998

A radiobiological model of radiotherapy response and its correlation with prognostic imaging variables

scientific article

A research agenda for radiation oncology: results of the radiation oncology institute's comprehensive research needs assessment

scientific article published on 19 March 2012

A simple magnetic spectrometer for radiotherapy electron beams

scientific article published on 01 November 1994

A treatment planning study comparing HDR and AGIMRT for cervical cancer

scientific article published on 01 April 2004

Absence of multiple local minima effects in intensity modulated optimization with dose-volume constraints

scientific article published in January 2003

Accelerating Monte Carlo simulations of radiation therapy dose distributions using wavelet threshold de-noising

scientific article published on October 2002

Accurate accumulation of dose for improved understanding of radiation effects in normal tissue

scientific article published on March 2010

Adaptation, Commissioning, and Evaluation of a 3D Treatment Planning System for High-Resolution Small-Animal Irradiation

scientific article published on 6 May 2015

Advanced technologies in the radiotherapy clinic: system fundamentals

scientific article published on 20 May 2011

Advancing our quantitative understanding of radiotherapy normal tissue morbidity

scientific article published on May 2014

An investigation of tomotherapy beam delivery

scientific article published on 01 March 1997

Appearance Constrained Semi-Automatic Segmentation from DCE-MRI is Reproducible and Feasible for Breast Cancer Radiomics: A Feasibility Study

scientific article published on 19 March 2018

Are unsatisfactory outcomes after concurrent chemoradiotherapy for locally advanced non-small cell lung cancer due to treatment-related immunosuppression?

scientific article published on 12 October 2019

Associations between volume changes and spatial dose metrics for the urinary bladder during local versus pelvic irradiation for prostate cancer

scientific article published on 12 April 2017

Automated 4D lung computed tomography reconstruction during free breathing for conformal radiation therapy

Automated Estimation of the Biophysical Target for Radiotherapy Treatment Planning using Multimodality Image Analysis

Automatic classification of prostate cancer Gleason scores from multiparametric magnetic resonance images

scientific article

Automatic detection and tracking of longitudinal changes of multiple bone metastases from dual energy CT

scientific article published on 01 April 2016

Beyond bixels: generalizing the optimization parameters for intensity modulated radiation therapy

scientific article published in October 2002

Beyond the margin recipe: the probability of correct target dosage and tumor control in the presence of a dose limiting structure

scientific article published on 23 August 2017

Bioinformatics methods for learning radiation-induced lung inflammation from heterogeneous retrospective and prospective data

scientific article published on 28 May 2009

Biomarkers and surrogate endpoints for normal-tissue effects of radiation therapy: the importance of dose-volume effects

scientific article

Breast cancer molecular subtype classifier that incorporates MRI features

scientific article

Breast cancer subtype intertumor heterogeneity: MRI-based features predict results of a genomic assay.

scientific article published on 7 April 2015

CERR: a computational environment for radiotherapy research

scientific article

Characterizing Cancer Drug Response and Biological Correlates: A Geometric Network Approach.

scientific article

Clinical and dosimetric predictors of acute hematologic toxicity in rectal cancer patients undergoing chemoradiotherapy

scientific article published on 7 October 2014

Combining multiple models to generate consensus: application to radiation-induced pneumonitis prediction

scientific article

Comments on the use of the Lyman-Kutcher-Burman model to describe tissue response to nonuniform irradiation

scientific article published in July 2000

Comparing primary tumors and metastatic nodes in head and neck cancer using intravoxel incoherent motion imaging: a preliminary experience.

scientific article published on May 2013

Complication probability models for radiation-induced heart valvular dysfunction: do heart-lung interactions play a role?

scientific article

Computational methods using genome-wide association studies to predict radiotherapy complications and to identify correlative molecular processes

scientific article published on 24 February 2017

Concurrent multimodality image segmentation by active contours for radiotherapy treatment planning

scientific article published in December 2007

Correlation Between Tumor Metabolism and Semiquantitative Perfusion Magnetic Resonance Imaging Metrics in Non-Small Cell Lung Cancer

scientific article published on 2 March 2018

Current role of PET in oncology: Potentials and challenges in the management of non-small cell lung cancer

Datamining approaches for modeling tumor control probability

scientific article published on 2 March 2010

Deblurring of breathing motion artifacts in thoracic PET images by deconvolution methods

scientific article published on 01 October 2006

Decision Fusion of Machine Learning Models to Predict Radiotherapy-Induced Lung Pneumonitis

scholarly article published 2008

Deformable registration of abdominal kilovoltage treatment planning CT and tomotherapy daily megavoltage CT for treatment adaptation

scientific article published on February 2009

Denoising of electron beam Monte Carlo dose distributions using digital filtering techniques

Denoising of electron beam Monte Carlo dose distributions using digital filtering techniques.

scientific article published on July 2000

Development, external validation and clinical usefulness of a practical prediction model for radiation-induced dysphagia in lung cancer patients

scientific article published in December 2010

Direct Comparison of Respiration-Correlated Four-Dimensional Magnetic Resonance Imaging Reconstructed Using Concurrent Internal Navigator and External Bellows

scientific article published on 9 November 2016

Dose Verification of Stereotactic Radiosurgery Treatment for Trigeminal Neuralgia with Presage 3D Dosimetry System

scientific article published on December 2010

Dose escalation, not “new biology,” can account for the efficacy of stereotactic body radiation therapy with non-small cell lung cancer. In regard to Brown et al.

scientific article published on July 2014

Dose response explorer: an integrated open-source tool for exploring and modelling radiotherapy dose-volume outcome relationships

scientific article published on 19 October 2006

Dose-volume factors correlating with trismus following chemoradiation for head and neck cancer

scientific article published on 29 April 2015

Dose-volume modeling of salivary function in patients with head-and-neck cancer receiving radiotherapy

scientific article published in July 2005

Dose/volume-response relations for rectal morbidity using planned and simulated motion-inclusive dose distributions

scientific article

Dosimetric Predictors of Radiation-Induced Vaginal Stenosis After Pelvic Radiation Therapy for Rectal and Anal Cancer

scientific article published on 28 April 2015

Dosimetric and workflow evaluation of first commercial synthetic CT software for clinical use in pelvis

scientific article

Dosimetric correlates for acute esophagitis in patients treated with radiotherapy for lung carcinoma

scientific article published on 01 March 2004

Estimate of the impact of FDG-avidity on the dose required for head and neck radiotherapy local control

scientific article published on 12 May 2014

Exploring feature-based approaches in PET images for predicting cancer treatment outcomes.

scientific article published on June 2009

Extrapolation chamber measurements of 90 Sr+90 Y beta-particle ophthalmic applicator dose rates

scientific article published on 01 January 1994

Feasibility of in situ, high-resolution correlation of tracer uptake with histopathology by quantitative autoradiography of biopsy specimens obtained under 18F-FDG PET/CT guidance.

scientific article published on 26 February 2015

Feasibility of small animal cranial irradiation with the microRT system

scientific article published on October 2008

Functional Data Analysis Applied to Modeling of Severe Acute Mucositis and Dysphagia Resulting From Head and Neck Radiation Therapy

scientific article

Functional network analysis reveals an immune tolerance mechanism in cancer

scientific article published on 29 June 2020

Geometric interpretation of the gamma dose distribution comparison technique: interpolation-free calculation

scientific article published in March 2008

Heart irradiation as a risk factor for radiation pneumonitis.

scientific article

How Can We Effect Culture Change Toward Data-Driven Medicine?

scientific article published on 21 December 2015

IMRT QA using machine learning: A multi-institutional validation

scientific article

IMRT treatment planning based on prioritizing prescription goals

scientific article published on 27 February 2007

IMRT treatment planning for prostate cancer using prioritized prescription optimization and mean-tail-dose functions

scientific article published on March 2008

Identifying radiation-induced survivorship syndromes affecting bowel health in a cohort of gynecological cancer survivors

scientific article

Image-based Data Mining to Probe Dosimetric Correlates of Radiation-induced Trismus

scientific article published in November 2018

Image-guided radiotherapy reduces the risk of under-dosing high-risk prostate cancer extra-capsular disease and improves biochemical control

scientific article published on 12 April 2018

Impact of dose to the bladder trigone on long-term urinary function after high-dose intensity modulated radiation therapy for localized prostate cancer.

scientific article published on February 2014

Improved long-term outcomes with IMRT: is it better technology or better physics?

scientific article published on December 2013

Improvement in toxicity in high risk prostate cancer patients treated with image-guided intensity-modulated radiotherapy compared to 3D conformal radiotherapy without daily image guidance

scientific article published on 04 February 2014

Improving Clinical Relevance in Ensemble Support Vector Machine Models of Radiation Pneumonitis Risk

Improving normal tissue complication probability models: the need to adopt a "data-pooling" culture.

scientific article

Independent test of a model to predict severe acute esophagitis.

scientific article

Influence of image slice thickness on rectal dose-response relationships following radiotherapy of prostate cancer

scientific article

Intensity-modulated radiation therapy for oropharyngeal carcinoma: impact of tumor volume

scientific article published on 01 May 2004

Inter-institutional analysis demonstrates the importance of lower than previously anticipated dose regions to prevent late rectal bleeding following prostate radiotherapy.

scientific article published on 9 March 2018

Internal and external generalizability of temporal dose-response relationships for xerostomia following IMRT for head and neck cancer.

scientific article

International Spine Radiosurgery Consortium consensus guidelines for target volume definition in spinal stereotactic radiosurgery

scientific article published on 19 May 2012

Intravoxel incoherent motion diffusion-weighted MRI at 3.0 T differentiates malignant breast lesions from benign lesions and breast parenchyma

scientific article published on 22 November 2013

Intravoxel incoherent motion diffusion-weighted MRI during chemoradiation therapy to characterize and monitor treatment response in human papillomavirus head and neck squamous cell carcinoma

scientific article

Introducing the Medical Physics Dataset Article

scientific article published on 01 February 2017

Investigating the Robustness Neighborhood Gray Tone Difference Matrix and Gray Level Co-occurrence Matrix Radiomic Features on Clinical Computed Tomography Systems Using Anthropomorphic Phantoms: Evidence From a Multivendor Study

scientific article published on 13 July 2017

Letter in response to “optimization of radiation therapy and the development of multileaf collimation” by Anders Brahme

article

Level set motion assisted non-rigid 3D image registration

MRI features predictive of negative surgical margins in patients with HER2 overexpressing breast cancer undergoing breast conservation

scientific article published on 10 January 2018

Machine Learning on a Genome-wide Association Study to Predict Late Genitourinary Toxicity After Prostate Radiation Therapy

scientific article published on 31 January 2018

Measured electron energy and angular distributions from clinical accelerators

scientific article published on 01 May 1996

Methodological issues in radiation dose-volume outcome analyses: summary of a joint AAPM/NIH workshop

scientific article

Modeling positioning uncertainties of prostate cancer external beam radiation therapy using pre-treatment data

scientific article

Modeling radiation pneumonitis risk with clinical, dosimetric, and spatial parameters

scientific article

Modeling radiation-induced lung injury risk with an ensemble of support vector machines

Modeling the Cellular Response of Lung Cancer to Radiation Therapy for a Broad Range of Fractionation Schedules

scientific article

Modeling the relationship between fluorodeoxyglucose uptake and tumor radioresistance as a function of the tumor microenvironment

scientific article published on 8 September 2014

Modeling the risk of radiation-induced acute esophagitis for combined Washington University and RTOG trial 93-11 lung cancer patients

scientific article published on 14 June 2011

Modification and validation of an analytical source model for external beam radiotherapy Monte Carlo dose calculations

scientific article published on August 2016

Motion correction of multi-b-value diffusion-weighted imaging in the liver.

scientific article published on 8 September 2012

Multi-institutional validation of a novel textural analysis tool for preoperative stratification of suspected thyroid tumors on diffusion-weighted MRI

scientific article

Multiatlas approach with local registration goodness weighting for MRI-based electron density mapping of head and neck anatomy

scientific article published on 26 April 2017

Multiple Resolution Residually Connected Feature Streams for Automatic Lung Tumor Segmentation From CT Images

Multiple local minima in radiotherapy optimization problems with dose–volume constraints ⬇️

scientific article published on July 1, 1997

Multivariable modeling of radiotherapy outcomes, including dose-volume and clinical factors

scientific article

Nonlinear Kernel-Based Approaches for Predicting Normal Tissue Toxicities

article

Normal Tissue Complication Probability (NTCP) modeling of late rectal bleeding following external beam radiotherapy for prostate cancer: A Test of the QUANTEC-recommended NTCP model

scientific article published on October 2010

Novel Super-Resolution Approach to Time-Resolved Volumetric 4-Dimensional Magnetic Resonance Imaging With High Spatiotemporal Resolution for Multi-Breathing Cycle Motion Assessment

scientific article

Operations research applied to radiotherapy, an NCI-NSF-sponsored workshop February 7-9, 2002.

scientific article published on November 2003

Optimization of the temporal pattern of radiation: an IMRT based study.

scientific article published in November 2006

Parotid gland fat related Magnetic Resonance image biomarkers improve prediction of late radiation-induced xerostomia

scientific article published on 26 June 2018

Partial tumor boosts: even more attractive than theory predicts?

scientific article published on 01 September 2001

Patterns and predictors of amelioration of genitourinary toxicity after high-dose intensity-modulated radiation therapy for localized prostate cancer: implications for defining postradiotherapy urinary toxicity

scientific article published on 14 February 2013

Pediatric Sarcoma Data Forms a Unique Cluster Measured via the Earth Mover's Distance

scientific article

Poisson formulas for tumor control probability with clonogen proliferation

scientific article published in March 1996

Preconditioned Random Forest Regression

Predicting Local Failure in Lung Cancer Using Bayesian Networks

Predicting hypoxia status using a combination of contrast-enhanced computed tomography and [18F]-Fluorodeoxyglucose positron emission tomography radiomics features.

scientific article published on 19 December 2017

Predicting radiation-induced valvular heart damage

scientific article published on 24 March 2015

Predicting radiotherapy outcomes using statistical learning techniques.

scientific article

Predictive modeling of outcomes following definitive chemoradiotherapy for oropharyngeal cancer based on FDG-PET image characteristics.

scientific article published on 12 June 2017

Predictive treatment management: incorporating a predictive tumor response model into robust prospective treatment planning for non-small cell lung cancer

scientific article

Predictors of acute throat or esophageal patient reported pain during radiation therapy for head and neck cancer

Predictors of acute toxicities during definitive chemoradiation using intensity-modulated radiotherapy for anal squamous cell carcinoma

scientific article published on 18 May 2015

Progress toward a microradiation therapy small animal conformal irradiator

scientific article published in October 2006

Qualitative evaluation of fiducial markers for radiotherapy imaging.

scientific article

Quantitative Analyses of Normal Tissue Effects in the Clinic (QUANTEC): an introduction to the scientific issues

scientific article

Quantitative apparent diffusion coefficient measurement obtained by 3.0Tesla MRI as a potential noninvasive marker of tumor aggressiveness in breast cancer

scientific article published on 28 June 2016

Radiation Dose to the Penile Structures and Patient-Reported Sexual Dysfunction in Long-Term Prostate Cancer Survivors

scientific article published on 13 November 2015

Radiation dose-volume effects and the penile bulb

scientific article published on March 2010

Radiation dose-volume effects in radiation-induced rectal injury

scientific article published in March 2010

Radiation dose-volume effects in the esophagus

scientific article published on March 2010

Radiation dose-volume effects in the lung.

scientific article published on March 2010

Radiomics analysis of pulmonary nodules in low-dose CT for early detection of lung cancer

scientific article published on 19 February 2018

Radiotherapy dose-volume effects on salivary gland function

scientific article

Relationships between dose to the gastro-intestinal tract and patient-reported symptom domains after radiotherapy for localized prostate cancer

scientific article published on 4 September 2015

Repeatability Investigation of Reduced Field-of-View Diffusion-Weighted Magnetic Resonance Imaging on Thyroid Glands

scientific article published on May 2015

Response and Rebuttal to Editorial Comment on “Radiation Dose to the Penile Structures and Patient-Reported Sexual Dysfunction in Long-Term Prostate Cancer Survivors”

Retrospective monte carlo dose calculations with limited beam weight information

scientific article published in January 2007

Reverse-Contrast Imaging and Targeted Radiation Therapy of Advanced Pancreatic Cancer Models.

scientific article

SITDEM: a simulation tool for disease/endpoint models of association studies based on single nucleotide polymorphism genotypes

scientific article published on 19 December 2013

STROGAR - STrengthening the Reporting Of Genetic Association studies in Radiogenomics

scientific article published on 27 August 2013

Simulating intrafraction prostate motion with a random walk model

scientific article published on 28 March 2017

Simultaneous segmentation and iterative registration method for computing ADC with reduced artifacts from DW-MRI.

scientific article

Sparing the region of the salivary gland containing stem cells preserves saliva production after radiotherapy for head and neck cancer.

scientific article published on September 2015

Spatial rectal dose/volume metrics predict patient-reported gastro-intestinal symptoms after radiotherapy for prostate cancer

scientific article published on 8 September 2017

Statistical simulations to estimate motion-inclusive dose-volume histograms for prediction of rectal morbidity following radiotherapy

scientific article published on 4 December 2012

Survival Among Men With Clinically Localized Prostate Cancer Treated With Radical Prostatectomy or Radiation Therapy in the Prostate Specific Antigen Era

scientific article published on 14 February 2012

Technical Note: Extension of CERR for computational radiomics: A comprehensive MATLAB platform for reproducible radiomics research

scientific article published on 13 June 2018

Technical Note: Scintillation well counters and particle counting digital autoradiography devices can be used to detect activities associated with genomic profiling adequacy of biopsy specimens obtained after a low activity 18 F-FDG injection

scientific article published on 26 February 2018

Technical note: DIRART--A software suite for deformable image registration and adaptive radiotherapy research.

scientific article

Technical note: deformable image registration on partially matched images for radiotherapy applications

scientific article published on January 2010

Temporal patterns of patient-reported trismus and associated mouth-opening distances in radiotherapy for head and neck cancer: A prospective cohort study.

scientific article published on 30 April 2017

The Prediction of Radiotherapy Toxicity Using Single Nucleotide Polymorphism-Based Models: A Step Toward Prevention

scientific article

The denoising of Monte Carlo dose distributions using convolution superposition calculations

scientific article published on 9 August 2007

The distance discordance metric-a novel approach to quantifying spatial uncertainties in intra- and inter-patient deformable image registration

scientific article published on 20 January 2014

The dose distribution produced by a 32P source for endovascular irradiation

scientific article published in November 1996

The generalized equivalent uniform dose function as a basis for intensity-modulated treatment planning

scientific article published in October 2002

The lessons of QUANTEC: recommendations for reporting and gathering data on dose-volume dependencies of treatment outcome.

scientific article

The role of parotid gland irradiation in the development of severe hyposalivation (xerostomia) after intensity-modulated radiation therapy for head and neck cancer: Temporal patterns, risk factors, and testing the QUANTEC guidelines.

scientific article published on 31 January 2017

The spectral dependence of electron central-axis depth-dose curves

scientific article published on 01 September 1994

The use and QA of biologically related models for treatment planning: short report of the TG-166 of the therapy physics committee of the AAPM.

scientific article published on March 2012

Tolerance doses for late adverse events after hypofractionated radiotherapy for prostate cancer on trial NRG Oncology/RTOG 0415

scholarly article by Maria Thor et al published June 2019 in Radiotherapy and Oncology

Tomotherapy: a new concept for the delivery of dynamic conformal radiotherapy

scientific article published in November 1993

Toronto Workshop on Late Recurrence in Estrogen Receptor-Positive Breast Cancer: Part 1: Late Recurrence: Current Understanding, Clinical Considerations

scientific article published on 10 August 2019

Toronto Workshop on Late Recurrence in Estrogen Receptor-Positive Breast Cancer: Part 2: Approaches to Predict and Identify Late Recurrence, Research Directions

scientific article published on 10 August 2019

Toward personalized dose-prescription in locally advanced non-small cell lung cancer: Validation of published normal tissue complication probability models

scientific article published on 27 May 2019

Transcriptional Responses to Ultraviolet and Ionizing Radiation: An Approach Based on Graph Curvature

scientific article published on December 2016

Treatment planning constraints to avoid xerostomia in head-and-neck radiotherapy: an independent test of QUANTEC criteria using a prospectively collected dataset

scientific article

Treatment planning evaluation and optimization should be biologically and not dose/volume based

scientific article published on June 2015

Tumor-aware, Adversarial Domain Adaptation from CT to MRI for Lung Cancer Segmentation

Uncertainties in model-based outcome predictions for treatment planning ⬇️

scientific article published on December 1, 2001

Unpaired Cross-Modality Educed Distillation (CMEDL) for Medical Image Segmentation

scientific article published on 02 May 2022

Urinary bladder dose-response relationships for patient-reported genitourinary morbidity domains following prostate cancer radiotherapy

scientific article

Use of normal tissue complication probability models in the clinic

scientific article published on March 2010

Using diffusion-weighted MRI to predict aggressive histological features in papillary thyroid carcinoma: a novel tool for pre-operative risk stratification in thyroid cancer

scientific article published on 21 April 2015

Validating a Predictive Atlas of Tumor Shrinkage for Adaptive Radiotherapy of Locally Advanced Lung Cancer

scientific article published on 02 June 2018

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