List of works - Haiquan Li

A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations

scientific article published on November 2017

A nearest neighbor approach for automated transporter prediction and categorization from protein sequences.

scientific article

Breakthroughs in genomics data integration for predicting clinical outcome

scientific article (publication date: December 2012)

Conquering computational challenges of omics data and post-ENCODE paradigms

scientific article published on 23 August 2013

Convergent downstream candidate mechanisms of independent intergenic polymorphisms between co-classified diseases implicate epistasis among noncoding elements

scientific article

Curation-free biomodules mechanisms in prostate cancer predict recurrent disease

scientific article

Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival

scientific article published on June 2015

Genomic inventory and transcriptional analysis of Medicago truncatula transporters

scientific article published on 18 December 2009

Hypothesis Generation from Heterogeneous Datasets

In Silico cancer cell versus stroma cellularity index computed from species-specific human and mouse transcriptome of xenograft models: towards accurate stroma targeting therapy assessment.

scientific article

Integrative genomics analyses unveil downstream biological effectors of disease-specific polymorphisms buried in intergenic regions

scientific article published on 27 April 2016

MET-IDEA version 2.06; improved efficiency and additional functions for mass spectrometry-based metabolomics data processing

N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes

scientific article

Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases

scientific article (publication date: 2013)

Oligo- and polymetastatic progression in lung metastasis(es) patients is associated with specific microRNAs

scientific article

Prognostic implication of pulmonary function at the beginning of postoperative radiotherapy in non-small cell lung cancer.

scientific article published on 28 November 2014

Random Forest Classification of Multitemporal Landsat 8 Spectral Data and Phenology Metrics for Land Cover Mapping in the Sonoran and Mojave Deserts

scientific article published in 2023

The mechanism of cancer drug addiction in ALK-positive T-Cell lymphoma

scientific article published on 05 December 2019

The mitochondrial cardiolipin remodeling enzyme lysocardiolipin acyltransferase is a novel target in pulmonary fibrosis

scientific article

The rise of translational bioinformatics

scientific article published on 31 August 2012

TransportTP: a two-phase classification approach for membrane transporter prediction and characterization

scientific article

iDEG: A single-subject method for assessing gene differential expression from two transcriptomes of an individual

article

kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects

scientific article published on 19 December 2016

List of works by Haiquan Li

A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations

A nearest neighbor approach for automated transporter prediction and categorization from protein sequences.

Breakthroughs in genomics data integration for predicting clinical outcome

Conquering computational challenges of omics data and post-ENCODE paradigms

Convergent downstream candidate mechanisms of independent intergenic polymorphisms between co-classified diseases implicate epistasis among noncoding elements

Curation-free biomodules mechanisms in prostate cancer predict recurrent disease

Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival

Genomic inventory and transcriptional analysis of Medicago truncatula transporters

Hypothesis Generation from Heterogeneous Datasets

In Silico cancer cell versus stroma cellularity index computed from species-specific human and mouse transcriptome of xenograft models: towards accurate stroma targeting therapy assessment.

Integrative genomics analyses unveil downstream biological effectors of disease-specific polymorphisms buried in intergenic regions

MET-IDEA version 2.06; improved efficiency and additional functions for mass spectrometry-based metabolomics data processing

N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes

Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases

Oligo- and polymetastatic progression in lung metastasis(es) patients is associated with specific microRNAs

Prognostic implication of pulmonary function at the beginning of postoperative radiotherapy in non-small cell lung cancer.

Random Forest Classification of Multitemporal Landsat 8 Spectral Data and Phenology Metrics for Land Cover Mapping in the Sonoran and Mojave Deserts

The mechanism of cancer drug addiction in ALK-positive T-Cell lymphoma

The mitochondrial cardiolipin remodeling enzyme lysocardiolipin acyltransferase is a novel target in pulmonary fibrosis

The rise of translational bioinformatics

TransportTP: a two-phase classification approach for membrane transporter prediction and characterization

iDEG: A single-subject method for assessing gene differential expression from two transcriptomes of an individual

kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects