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List of works by Charles D. Johnson

<i>Brucella</i> activates the host RIDD pathway to subvert BLOS1-directed immune defense

scientific article published on 19 May 2022

A Colletotrichum graminicola mutant deficient in the establishment of biotrophy reveals early transcriptional events in the maize anthracnose disease interaction

scientific article

A draft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the Late Pleistocene

scholarly article

Analyzing micro-RNA expression using microarrays

scientific article published on January 2006

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size

scientific article published on 17 July 2017

Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data

scholarly article published 2016

De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp

Differential response in cell proliferation to beta estradiol in coronary arterial vascular smooth muscle cells obtained from mature female versus male animals

scientific article published in November 1996

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens

scientific article

Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline

scientific article published in March 2018

Fast DNA barcode generating algorithm using Radix Coding method

Genetic dissection of end‐use quality traits in two widely adapted wheat cultivars ‘TAM 111’ and ‘TAM 112’

scientific article published in 2021

Genome-scale microRNA and small interfering RNA screens identify small RNA modulators of TRAIL-induced apoptosis pathway

scientific article

Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing

scientific article

Genomic profiles and predictive biological networks in oxidant-induced atherogenesis

scientific article published on 13 May 2003

HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment

scientific article published on 5 September 2017

Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes

scientific article published in Nature Communications

Identification and Analysis of the First 2009 Pandemic H1N1 Influenza Virus from U.S. Feral Swine ⬇️

scientific article published on September 17, 2012

In vitro models to evaluate acute and chronic injury to the heart and vascular systems

scientific article

Insight into redox-regulated gene networks in vascular cells

scientific article published on 10 April 2007

Mapping QTL for Yield and Its Component Traits Using Wheat (Triticum aestivum L.) RIL Mapping Population from TAM 113 × Gallagher

scientific article published in 2023

Modeling the next generation sequencing sample processing pipeline for the purposes of classification

scientific article

Modulation of RNA polymerase II phosphorylation downstream of pathogen perception orchestrates plant immunity

scientific article published on 26 November 2014

Neural crest and mesoderm lineage-dependent gene expression in orofacial development

scientific article

Northern Bobwhite (Colinus virginianus) Mitochondrial Population Genomics Reveals Structure, Divergence, and Evidence for Heteroplasmy

scientific article published on 29 December 2015

Novel genomic targets in oxidant-induced vascular injury

scientific article published on 19 April 2005

Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture

scientific article

OBGene: Optimal barcode generator for NGS experiments

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

scientific article

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

scientific article

The let-7 microRNA represses cell proliferation pathways in human cells

scientific article (publication date: 15 August 2007)

Toxicogenomic profile of 2,3,7,8-tetrachlorodibenzo-p-dioxin in the murine fetal heart: modulation of cell cycle and extracellular matrix genes

scientific article published on 24 August 2005

Translational control of lipogenic enzymes in the cell cycle of synchronous, growing yeast cells

scientific article published on 5 January 2017

Unraveling gene-gene interactions regulated by ligands of the aryl hydrocarbon receptor

scientific article

Unraveling gene-gene interactions regulated by ligands of the aryl hydrocarbon receptor

article

Using RNA sample titrations to assess microarray platform performance and normalization techniques

scientific article

Whole-genome sequencing and genetic variant analysis of a Quarter Horse mare

scientific article

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