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List of works by Eduardo N Taboada

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Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

scientific article
The genetic bases for the variation in the lipo-oligosaccharide of the mucosal pathogen, Campylobacter jejuni. Biosynthesis of sialylated ganglioside mimics in the core oligosaccharide

scientific article published on 31 October 2001
Genome-wide expression analyses of Campylobacter jejuni NCTC11168 reveals coordinate regulation of motility and virulence by flhA.

scientific article published on 25 February 2004
Genome evolution in major Escherichia coli O157:H7 lineages

scientific article published on 16 May 2007
The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

scientific article published on 22 January 2016
Large-scale comparative genomics meta-analysis of Campylobacter jejuni isolates reveals low level of genome plasticity.

scientific article published on October 2004
Molecular subtypes of Campylobacter spp., Salmonella enterica, and Escherichia coli O157:H7 isolated from faecal and surface water samples in the Oldman River watershed, Alberta, Canada

scientific article published in January 2011
Genotypic characterization and prevalence of virulence factors among Canadian Escherichia coli O157:H7 strains

scientific article published on 16 May 2008
The occurrence and sources of Campylobacter spp., Salmonella enterica and Escherichia coli O157:H7 in the Salmon River, British Columbia, Canada

scientific article published on 9 November 2009
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology

scientific article published on 8 June 2017
Development and Validation of a Comparative Genomic Fingerprinting Method for High-Resolution Genotyping of Campylobacter jejuni

scientific article published on December 14, 2011
In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence

scientific article published on 29 June 2009
A systematic review characterizing on-farm sources of Campylobacter spp. for broiler chickens

scientific article
Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni

scientific article
Methodologies towards the development of an oligonucleotide microarray for determination of Salmonella serotypes

scientific article published on 7 June 2007
A new approach for the analysis of bacterial microarray-based Comparative Genomic Hybridization: insights from an empirical study

scientific article
Evaluation of MALDI-TOF mass spectroscopy methods for determination of Escherichia coli pathotypes

scientific article published on June 28, 2013
Comparison of molecular typing methods useful for detecting clusters of Campylobacter jejuni and C. coli isolates through routine surveillance

scientific article published on 7 December 2011
Current methods for molecular typing of Campylobacter species.

scientific article published on 17 July 2013
Transcriptional and translational expression patterns associated with immobilized growth of Campylobacter jejuni

scientific article published on 01 February 2006
Comparative genomic analysis of Campylobacter jejuni associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity

scientific article
The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory.

scientific article
Spatial and temporal drivers of zoonotic pathogen contamination of an agricultural watershed

scientific article published in January 2012
Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access

scientific article
An enhanced technique combining pre-enrichment and passive filtration increases the isolation efficiency of Campylobacter jejuni and Campylobacter coli from water and animal fecal samples

scientific article published on 14 September 2012
Rapid determination of Escherichia coli O157:H7 lineage types and molecular subtypes by using comparative genomic fingerprinting

scientific article published on 12 September 2008
Comparative variation within the genome of Campylobacter jejuni NCTC 11168 in human and murine hosts

scientific article
Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections

scientific article
A framework for assessing the concordance of molecular typing methods and the true strain phylogeny of Campylobacter jejuni and C. coli using draft genome sequence data

scientific article
Comparative genomics profiling of clinical isolates of Aeromonas salmonicida using DNA microarrays.

scientific article
Comparative Detection and Quantification of Arcobacter butzleri in Stools from Diarrheic and Nondiarrheic People in Southwestern Alberta, Canada

scientific article published on 10 February 2016
Genomics-based molecular epidemiology of Campylobacter jejuni isolates from feedlot cattle and from people in Alberta, Canada

scientific article
Comprehensive assessment of the quality of Salmonella whole genome sequence data available in public sequence databases using the Salmonella in silico Typing Resource (SISTR).

scientific article published on 17 January 2018
Source attribution of human campylobacteriosis at the point of exposure by combining comparative exposure assessment and subtype comparison based on comparative genomic fingerprinting

scientific article published on 24 August 2017
Epidemiology of antimicrobial resistant Campylobacter spp. isolated from retail meats in Canada

scientific article published on 29 April 2017
Detection of genetic diversity in Campylobacter jejuni isolated from a commercial turkey flock using flaA typing, MLST analysis and microarray assay

scientific article
Extensive characterization of Campylobacter jejuni chicken isolates to uncover genes involved in the ability to compete for gut colonization

scientific article published on 10 May 2015
Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population.

scientific article
Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.

scientific article published on 10 May 2017
A Genome-Wide Association Study to Identify Diagnostic Markers for Human Pathogenic Campylobacter jejuni Strains

scientific article
Molecular epidemiology of Campylobacter jejuni human and chicken isolates from two health units

scientific article published on 12 November 2013
Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion.

scientific article published on 21 October 2016
Genomic regions conserved in lineage II Escherichia coli O157:H7 strains.

scientific article published on 27 March 2009
Studying Bacterial Genome Dynamics Using Microarray-Based Comparative Genomic Hybridization

article
Integrating Whole-Genome Sequencing Data Into Quantitative Risk Assessment of Foodborne Antimicrobial Resistance: A Review of Opportunities and Challenges.

scientific article
Development of a comparative genomic fingerprinting assay for rapid and high resolution genotyping of Arcobacter butzleri.

scientific article published on 7 May 2015
Efficacy of wastewater treatment on Arcobacter butzleri density and strain diversity

scientific article
Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i:

scientific article published in Scientific Reports
SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli

scientific article
Subtyping of a large collection of historical Listeria monocytogenes strains from Ontario, Canada, by an improved multilocus variable-number tandem-repeat analysis (MLVA).

scientific article published on 16 August 2013

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