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List of works by Eduardo N Taboada

A Genome-Wide Association Study to Identify Diagnostic Markers for Human Pathogenic Campylobacter jejuni Strains

scientific article

A framework for assessing the concordance of molecular typing methods and the true strain phylogeny of Campylobacter jejuni and C. coli using draft genome sequence data

scientific article

A new approach for the analysis of bacterial microarray-based Comparative Genomic Hybridization: insights from an empirical study

scientific article

A repeated cross-sectional study of the epidemiology of Campylobacter and antimicrobial resistant Enterobacteriaceae in free-living Canada geese in Guelph, Ontario, Canada

article

A strain comparison of Campylobacter isolated from retail poultry and human clinical cases in Atlantic Canada

article

A systematic review characterizing on-farm sources of Campylobacter spp. for broiler chickens

scientific article

An enhanced technique combining pre-enrichment and passive filtration increases the isolation efficiency of Campylobacter jejuni and Campylobacter coli from water and animal fecal samples

scientific article published on 14 September 2012

Analysis of Campylobacter jejuni Subtype Distribution in the Chicken Broiler Production Continuum: Longitudinal Examination of Birds from Three Farms over a 1.5-Year Period in Southwestern Alberta, Canada to Identify Primary Contamination Points

scientific article published on 06 November 2020

Carriage of Campylobacter, Salmonella, and Antimicrobial-Resistant, Nonspecific Escherichia coli by Waterfowl Species Collected from Three Sources in Southern Ontario, Canada

scientific article published on 25 April 2019

Clinically Relevant Campylobacter jejuni Subtypes Are Readily Found and Transmitted within the Cattle Production Continuum but Present a Limited Foodborne Risk

scientific article published on 02 March 2020

Cluster Analysis of Campylobacter jejuni Genotypes Isolated from Small and Medium-Sized Mammalian Wildlife and Bovine Livestock from Ontario Farms.

scientific article published on 5 August 2016

Comparative Detection and Quantification of Arcobacter butzleri in Stools from Diarrheic and Nondiarrheic People in Southwestern Alberta, Canada

scientific article published on 10 February 2016

Comparative genomic analysis of Campylobacter jejuni associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity

scientific article

Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni

scientific article

Comparative genomic fingerprinting of Campylobacter: application in routine public health surveillance and epidemiological investigations

scientific article

Comparative genomics profiling of clinical isolates of Aeromonas salmonicida using DNA microarrays.

scientific article

Comparative variation within the genome of Campylobacter jejuni NCTC 11168 in human and murine hosts

scientific article

Comparison of molecular typing methods useful for detecting clusters of Campylobacter jejuni and C. coli isolates through routine surveillance

scientific article published on 7 December 2011

Comprehensive assessment of the quality of Salmonella whole genome sequence data available in public sequence databases using the Salmonella in silico Typing Resource (SISTR).

scientific article published on 17 January 2018

Current methods for molecular typing of Campylobacter species.

scientific article published on 17 July 2013

Detection of genetic diversity in Campylobacter jejuni isolated from a commercial turkey flock using flaA typing, MLST analysis and microarray assay

scientific article

Development and Validation of a Comparative Genomic Fingerprinting Method for High-Resolution Genotyping of Campylobacter jejuni ⬇️

scientific article published on December 14, 2011

Development of a comparative genomic fingerprinting assay for rapid and high resolution genotyping of Arcobacter butzleri.

scientific article published on 7 May 2015

Efficacy of wastewater treatment on Arcobacter butzleri density and strain diversity

scientific article

Enhanced microbiological surveillance reveals that temporal case clusters contribute to the high rates of campylobacteriosis in a model agroecosystem

scientific article published on 28 April 2019

Epidemiology of Campylobacter, Salmonella and antimicrobial resistant Escherichia coli in free-living Canada geese (Branta canadensis) from three sources in southern Ontario

article

Epidemiology of antimicrobial resistant Campylobacter spp. isolated from retail meats in Canada

scientific article published on 29 April 2017

Evaluation of real-time PCR assays and standard curve optimisation for enhanced accuracy in quantification of Campylobacter environmental water isolates

scientific article published on 30 July 2016

Extensive characterization of Campylobacter jejuni chicken isolates to uncover genes involved in the ability to compete for gut colonization

scientific article published on 10 May 2015

Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access

scientific article

Genome evolution in major Escherichia coli O157:H7 lineages

scientific article

Genome-wide expression analyses of Campylobacter jejuni NCTC11168 reveals coordinate regulation of motility and virulence by flhA.

scientific article published on 25 February 2004

Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i:

scientific article published in Scientific Reports

Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population.

scientific article

Genomic regions conserved in lineage II Escherichia coli O157:H7 strains.

scientific article published on 27 March 2009

Genomics-based molecular epidemiology of Campylobacter jejuni isolates from feedlot cattle and from people in Alberta, Canada

scientific article

Genotypic characterization and prevalence of virulence factors among Canadian Escherichia coli O157:H7 strains

scientific article published on 16 May 2008

In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence

scientific article published on 29 June 2009

Integrating Whole-Genome Sequencing Data Into Quantitative Risk Assessment of Foodborne Antimicrobial Resistance: A Review of Opportunities and Challenges.

scientific article

Large-scale comparative genomics meta-analysis of Campylobacter jejuni isolates reveals low level of genome plasticity.

scientific article published on October 2004

Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.

scientific article published on 10 May 2017

Methodologies towards the development of an oligonucleotide microarray for determination of Salmonella serotypes

scientific article published on 7 June 2007

Molecular and Statistical Analysis of Campylobacter spp. and Antimicrobial-Resistant Campylobacter Carriage in Wildlife and Livestock from Ontario Farms

scientific article published on 27 July 2016

Molecular epidemiology of Campylobacter jejuni human and chicken isolates from two health units

scientific article published on 12 November 2013

Molecular subtypes of Campylobacter spp., Salmonella enterica, and Escherichia coli O157:H7 isolated from faecal and surface water samples in the Oldman River watershed, Alberta, Canada

scientific article published in January 2011

Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion.

scientific article published on 21 October 2016

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

scientific article

Prevalence and diversity of waterborne Arcobacter butzleri in southwestern Alberta, Canada.

scientific article

Rapid determination of Escherichia coli O157:H7 lineage types and molecular subtypes by using comparative genomic fingerprinting

scientific article published on 12 September 2008

SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology

scientific article published on 8 June 2017

Salmonella, Campylobacter, Clostridium difficile, and anti-microbial resistant Escherichia coli in the faeces of sympatric meso-mammals in southern Ontario, Canada

scientific article published on 15 April 2019

Source attribution of human campylobacteriosis at the point of exposure by combining comparative exposure assessment and subtype comparison based on comparative genomic fingerprinting

scientific article published on 24 August 2017

Spatial and temporal drivers of zoonotic pathogen contamination of an agricultural watershed

scientific article published in January 2012

Studying Bacterial Genome Dynamics Using Microarray-Based Comparative Genomic Hybridization

article

Subtype-specific selection for resistance to fluoroquinolones but not to tetracyclines occurs in Campylobacter jejuni from beef cattle in confined feeding operations in Southern Alberta, Canada

scientific article published on 19 January 2018

Subtyping of a large collection of historical Listeria monocytogenes strains from Ontario, Canada, by an improved multilocus variable-number tandem-repeat analysis (MLVA).

scientific article published on 16 August 2013

SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli

scientific article

Tetracycline Resistant Campylobacter jejuni Subtypes Emanating from Beef Cattle Administered Non-Therapeutic Chlortetracycline are Longitudinally Transmitted within the Production Continuum but are Not Detected in Ground Beef

scientific article published on 21 December 2019

The EpiQuant Framework for Computing Epidemiological Concordance of Microbial Subtyping Data

scientific article

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

scientific article published on 22 January 2016

The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory.

scientific article

The genetic bases for the variation in the lipo-oligosaccharide of the mucosal pathogen, Campylobacter jejuni. Biosynthesis of sialylated ganglioside mimics in the core oligosaccharide

scientific article published on 31 October 2001

The occurrence and sources of Campylobacter spp., Salmonella enterica and Escherichia coli O157:H7 in the Salmon River, British Columbia, Canada

scientific article published on 9 November 2009

Therapeutic administration of enrofloxacin in mice does not select for fluoroquinolone resistance in Campylobacter jejuni

scientific article published on 11 May 2018

Transcriptional and translational expression patterns associated with immobilized growth of Campylobacter jejuni

scientific article published on 01 February 2006

Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections

scientific article

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