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List of works by Søren J Sørensen

454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

scientific article

454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities

scientific article published in 2011

A community resource for paired genomic and metabolomic data mining

scientific article published in 2021

A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

article

A flow cytometry-optimized assay using an SOS-green fluorescent protein (SOS-GFP) whole-cell biosensor for the detection of genotoxins in complex environments

scientific article published on 18 January 2006

A low-cost, multiplexable, automated flow cytometry procedure for the characterization of microbial stress dynamics in bioreactors

scientific article published on 31 October 2013

A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community

scientific article published on 28 November 2017

A new method for determining the metabolic activity of specific bacterial populations in soil using tritiated leucine and immunomagnetic separation

A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil.

scientific article

A post-planktonic era of in vitro infectious models: issues and changes addressed by a clinically relevant wound like media

scientific article published on 21 November 2016

A spatiotemporal view of plasmid loss in biofilms and planktonic cultures

scientific article

A spatiotemporal view of plasmid loss in biofilms and planktonic cultures

article

Acclimation of subsurface microbial communities to mercury

scientific article published on 3 June 2008

Acromyrmex Leaf-Cutting Ants Have Simple Gut Microbiota with Nitrogen-Fixing Potential

scientific article published on 5 June 2015

Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments

scientific article published on 30 November 2012

All IncP-1 plasmid subgroups, including the novel epsilon subgroup, are prevalent in the influent of a Danish wastewater treatment plant

scientific article published on 6 June 2009

Alterations of the murine gut microbiome in allergic airway disease are independent of surfactant protein D

scientific article published on 16 March 2017

Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing

scientific article published on 05 August 2019

An improved method for including upper size range plasmids in metamobilomes

scientific article

An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer

article

An unexpected location of the arginine catabolic mobile element (ACME) in a USA300-related MRSA strain

scientific article

Antagonism correlates with metabolic similarity in diverse bacteria.

scientific article

Application of a mer-lux biosensor for estimating bioavailable mercury in soil

article

Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing

scientific article

Associational Resistance to Predation by Protists in a Mixed Species Biofilm

scientific article published in 2023

Autogenic succession and deterministic recovery following disturbance in soil bacterial communities

scientific article published on 06 April 2017

Back to the Future of Soil Metagenomics

scientific article

Bacterial chitinolytic communities respond to chitin and pH alteration in soil

scientific article published on 26 October 2012

Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment

scientific article published on 30 October 2015

Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass

scientific article published on 04 February 2019

Bacterial community structure in High-Arctic snow and freshwater as revealed by pyrosequencing of 16S rRNA genes and cultivation

article

Bacterial social interactions and the emergence of community-intrinsic properties

scientific article published on 30 November 2017

Bacterial symbiont sharing in Megalomyrmex social parasites and their fungus-growing ant hosts

scientific article

Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil

article

Biodegradation, bioaccessibility, and genotoxicity of diffuse polycyclic aromatic hydrocarbon (PAH) pollution at a motorway site

scientific article published in May 2006

Biofilm growth and near-infrared radiation-driven photosynthesis of the chlorophyll d-containing cyanobacterium Acaryochloris marina

scientific article

Biofilms in chronic infections - a matter of opportunity - monospecies biofilms in multispecies infections

scientific article

Bioinformatic approaches reveal metagenomic characterization of soil microbial community

scientific article

Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes

scientific article published on 30 November 2021

Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community

scientific article published on 17 March 2015

Bulk soil and maize rhizosphere resistance genes, mobile genetic elements and microbial communities are differently impacted by organic and inorganic fertilization

article

CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

scientific article published on 01 May 2022

Cell mass and cell cycle dynamics of an asynchronous budding yeast population: experimental observations, flow cytometry data analysis, and multi-scale modeling

scientific article

Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows

scientific article published on 29 August 2018

Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment

scientific article published on 4 September 2007

Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing

article

Characterization of the gut microbiota in leptin deficient obese mice - Correlation to inflammatory and diabetic parameters.

scientific article

Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium

scientific article published on 10 February 2015

Chromosomal insertion of the entire Escherichia coli lactose operon, into two strains of Pseudomonas, using a modified mini-Tn5 delivery system.

scientific article

Coexistence facilitates interspecific biofilm formation in complex microbial communities

scientific article

Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period

scientific article

Community-intrinsic properties enhance keratin degradation from bacterial consortia

scientific article published on 31 January 2020

Comparative Genomic Analysis Reveals Ecological Differentiation in the Genus Carnobacterium

scientific article published on 08 March 2017

Complete Genome Sequences of Four Novel Lactococcus lactis Phages Distantly Related to the Rare 1706 Phage Species

scientific article

Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes

scientific article published in 2013

Conjugative plasmid conferring resistance to olaquindox

scientific article

Conjugative plasmids: vessels of the communal gene pool

scientific article published on August 2009

Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat.

scientific article published on 3 November 2006

Construction and use of flow cytometry optimized plasmid-sensor strains

scientific article published in January 2009

Construction of a ColD cda promoter-based SOS-green fluorescent protein whole-cell biosensor with higher sensitivity toward genotoxic compounds than constructs based on recA, umuDC, or sulA promoters.

scientific article

Construction of an extended range whole-cell tetracycline biosensor by use of the tet(M) resistance gene

scientific article published on 7 October 2005

Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure

scientific article published on 18 August 2016

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

scientific article published on 2 October 2017

Critical Assessment of Metagenome Interpretation: the second round of challenges

scientific article published in April 2022

Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among gram-positive and gram-negative bacteria indigenous to the barley rhizosphere

scientific article

Culture-dependent and -independent investigations of microbial diversity on urinary catheters

scientific article

Current strategies for mobilome research

scientific article published on January 2014

DNA- and RNA-SIP Reveal Nitrospira spp. as Key Drivers of Nitrification in Groundwater-Fed Biofilters

scientific article published on 05 November 2019

DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque

scientific article

Deciphering conjugative plasmid permissiveness in wastewater microbiomes

scientific article published on 8 April 2017

Deciphering links between bacterial interactions and spatial organization in multispecies biofilms

scientific article published on 27 August 2019

Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma

scientific article published on 01 November 2020

Design and synthesis of a quintessential self-transmissible IncX1 plasmid, pX1.0

scientific article (publication date: 2011)

Design of growth-dependent biosensors based on destabilized GFP for the detection of physiological behavior of Escherichia coli in heterogeneous bioreactors

scientific article published on 18 March 2013

Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps

article

Direct Detection and Quantification of Horizontal Gene Transfer by Using Flow Cytometry and gfp as a Reporter Gene ⬇️

scientific article published on August 1, 2003

Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements

scientific article published on 06 November 2020

Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation

scientific article published on 9 August 2016

Diverse gene functions in a soil mobilome

article

Diversity and characterization of mercury-resistant bacteria in snow, freshwater and sea-ice brine from the High Arctic

scientific article

Draft Genome Assembly of Two Pseudoclavibacter helvolus Strains, G8 and W3, Isolated from Slaughterhouse Environments

scientific article

Draft Genome Sequence of Burkholderia sordidicola S170, a Potential Plant Growth Promoter Isolated from Coniferous Forest Soil in the Czech Republic

scientific article published on 14 August 2014

Draft Genome Sequences of Two Kocuria Isolates, K. salsicia G1 and K. rhizophila G2, Isolated from a Slaughterhouse in Denmark

scientific article

Draft genome sequence of the soil bacterium Burkholderia terrae strain BS001, which interacts with fungal surface structures

scientific article published on August 2012

Draft genome sequences of two protease-producing strains of arsukibacterium, isolated from two cold and alkaline environments

scientific article published on 4 June 2015

Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse

scientific article published on 10 May 2012

Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters

scientific article published on 8 March 2016

Ecological succession in the vaginal microbiota during pregnancy and birth

scientific article published on 02 June 2020

Effect of long-term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce

scientific article published on 29 April 2019

Effect of tetracycline on transfer and establishment of the tetracycline-inducible conjugative transposon Tn916 in the guts of gnotobiotic rats

scientific article

Effects of Soil Pre-Treatment with Basamid® Granules, Brassica juncea, Raphanus sativus, and Tagetes patula on Bacterial and Fungal Communities at Two Apple Replant Disease Sites

scientific article published on September 2017

Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing

article published in 2013

Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis

scientific article published on 18 November 2021

Endolithic chlorophyll d-containing phototrophs.

scientific article published on 16 December 2010

Enhanced bacterial mutualism through an evolved biofilm phenotype

scientific article published on 05 July 2018

Enhanced biofilm formation and increased resistance to antimicrobial agents and bacterial invasion are caused by synergistic interactions in multispecies biofilms

scientific article

Enhanced degradation of phenoxyacetic acid in soil by horizontal transfer of the tfdA gene encoding a 2,4-dichlorophenoxyacetic acid dioxygenase

scientific article published on 01 March 2001

Enhanced plasmid loss in bacterial populations exposed to the antimicrobial compound irgasan delivered from interpenetrating polymer network silicone hydrogels

scientific article published on 12 October 2016

Enrichment and characterization of an environmental microbial consortium displaying efficient keratinolytic activity

scientific article published on 04 September 2018

Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota

scientific article published on 07 August 2020

Erratum: Corrigendum: The microbiome of New World vultures

scientific article published in Nature Communications

Establishment and Early Succession of a Multispecies Biofilm Composed of Soil Bacteria

article by Mette Burmølle et al published 26 June 2007 in Microbial Ecology

Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community

article by Liguan Li et al published 2 April 2018 in Environmental science & technology letters

Experimental methods and modeling techniques for description of cell population heterogeneity.

scientific article published on 19 April 2011

Exploring the complex response to linuron of bacterial communities from biopurification systems by means of cultivation-independent methods

scientific article published on 23 December 2015

Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance

scientific article

Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models

scientific article

Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

scientific article published on 25 April 2019

Fluorescence recovery allows the implementation of a fluorescence reporter gene platform applicable for the detection and quantification of horizontal gene transfer in anoxic environments

scientific article published on 12 January 2018

Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease

article by Xorla Kanfra et al published 2018 in Frontiers in Plant Science

Genetic barcoding of dark-spored myxomycetes (Amoebozoa)-Identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies

scientific article published on 12 October 2017

Genome Sequence of Arthrobacter antarcticus Strain W2, Isolated from a Slaughterhouse

scientific article

Genome Sequence of Kocuria palustris Strain W4.

scientific article

Genome Sequence of Kocuria varians G6 Isolated from a Slaughterhouse in Denmark

scientific article

Genome Sequence of Leuconostoc mesenteroides subsp. cremoris Strain T26, Isolated from Mesophilic Undefined Cheese Starter

scientific article published on 5 June 2014

Genome Sequence of Psychrobacter cibarius Strain W1.

scientific article published on 26 May 2016

Genome Sequences of Two Leuconostoc pseudomesenteroides Strains Isolated from Danish Dairy Starter Cultures

scientific article published on 5 June 2014

Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases

scientific article published in February 2016

Green fluorescent protein (GFP) leakage from microbial biosensors provides useful information for the evaluation of the scale-down effect

scientific article published on 21 June 2011

Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse

scientific article

Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites

article

Heterogeneity in recombinant protein production

article

High diversity of bacterial mercuric reductase genes from surface and sub-surface floodplain soil (Oak Ridge, USA).

scientific article

High frequencies of antibiotic resistance genes in infants' meconium and early fecal samples

scientific article published on 10 September 2015

High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation

scientific article

High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions.

scientific article

Host-specific microbial communities in three sympatric North Sea sponges

scientific article

How Microbial Aggregates Protect against Nanoparticle Toxicity

article

Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome

scientific article

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

scientific article published on 6 July 2014

Identification of the Amidase BbdA That Initiates Biodegradation of the Groundwater Micropollutant 2,6-dichlorobenzamide (BAM) in Aminobacter sp. MSH1

scientific article published on 10 September 2015

Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment

scientific article

Identifying the core microbial community in the gut of fungus-growing termites.

scientific article published on 27 August 2014

Impact of DNA extraction method on bacterial community composition measured by denaturing gradient gel electrophoresis

article

Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations.

scientific article

Impact of intensive lifestyle intervention on gut microbiota composition in type 2 diabetes: a <i>post-hoc</i> analysis of a randomized clinical trial

scientific article published on 01 January 2022

Impact of long-term agricultural management practices on soil prokaryotic communities

Improvement of pesticide removal in contaminated media using aqueous extracts from contaminated biopurification systems

scientific article published on 07 July 2019

In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina

scientific article published on 31 October 2017

In vivo detection and quantification of tetracycline by use of a whole-cell biosensor in the rat intestine

scientific article published on April 2004

Inducible gene expression by nonculturable bacteria in milk after pasteurization

scientific article published on April 2002

Infant airway microbiota and topical immune perturbations in the origins of childhood asthma

scientific article published on 01 November 2019

Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential

scientific article published on 7 September 2011

Interactions in multispecies biofilms: do they actually matter?

scientific article published on 15 January 2014

Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment

scientific article published on 30 April 2015

Interspecific Bacterial Interactions are Reflected in Multispecies Biofilm Spatial Organization

scientific article

Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam

article

Investigating the diversity of pseudomonas spp. in soil using culture dependent and independent techniques

scientific article

Investigation of diversity of plasmids carrying the blaTEM-52 gene

scientific article published on 10 August 2011

Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches.

scientific article

Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny

scientific article published on 10 May 2013

It is elemental: soil nutrient stoichiometry drives bacterial diversity

scientific article

Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies.

scientific article

Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation

scientific article published on 25 September 2017

Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome.

scientific article published on 28 September 2017

Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages

scientific article published in 2018

Loss of microbial diversity in soils is coincident with reductions in some specialized functions.

scientific article published on 15 January 2014

Low-abundant species facilitates specific spatial organization that promotes multispecies biofilm formation

scientific article published on 15 June 2017

Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere

article

Making bio-sense of toxicity: new developments in whole-cell biosensors

scientific article

Manure and Doxycycline Affect the Bacterial Community and Its Resistome in Lettuce Rhizosphere and Bulk Soil

scientific article published in 2019

Maturation of the gut microbiome and risk of asthma in childhood

scientific article published on 10 January 2018

Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine

scientific article

Metabolic variability in bioprocessing: implications of microbial phenotypic heterogeneity

Metagenomes provide valuable comparative information on soil microeukaryotes

scientific article

Metagenomic Analysis of Dairy Bacteriophages: Extraction Method and Pilot Study on Whey Samples Derived from Using Undefined and Defined Mesophilic Starter Cultures.

scientific article published on 28 July 2017

Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner

scientific article published on 2 August 2016

Metamobilomics – expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing ⬇️

scientific article published on July 1, 2012

Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts

scientific article

Methods for Detection of Conjugative Plasmid Transfer in Aquatic Environments ⬇️

scientific article published on 01 October 1998

Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm

scientific article published in 2018

Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil

scientific article

Microbial diversity and PAH catabolic genes tracking spatial heterogeneity of PAH concentrations

scientific article

Microbial diversity and dynamics throughout manufacturing and ripening of surface ripened semi-hard Danish Danbo cheeses investigated by culture-independent techniques

scientific article published on 25 September 2015

Microbial diversity in a permanently cold and alkaline environment in Greenland

scientific article published on 27 April 2015

Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella

scientific article

Microbial indicators for soil quality

Microbiomes associated with infective stages of root-knot and lesion nematodes in soil

scientific article

Microbiomes in Dishwashers: Analysis of the microbial diversity and putative opportunistic pathogens in dishwasher biofilm communities.

scientific article

Mineralisation of 2,6-dichlorobenzamide (BAM) in dichlobenil-exposed soils and isolation of a BAM-mineralising Aminobacter sp.

scientific article published on 2 March 2006

Mining of unexplored habitats for novel chitinases--chiA as a helper gene proxy in metagenomics

scientific article published on 25 April 2012

Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives

Natural decay process affects the abundance and community structure of Bacteria and Archaea in Picea abies logs.

scientific article

Natural hot spots for gain of multiple resistances: arsenic and antibiotic resistances in heterotrophic, aerobic bacteria from marine hydrothermal vent fields

scientific article

Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria

scientific article

Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux

scientific article published on 28 April 2008

Nutrient Fortification of Human Donor Milk Affects Intestinal Function and Protein Metabolism in Preterm Pigs

scientific article published on 01 March 2018

Persistence and progression of staphylococcal infection in the presence of public goods

scientific article published on 27 November 2020

Persistence mechanisms of conjugative plasmids

scientific article published on January 2009

Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law.

scientific article published on 14 July 2015

Physiological heterogeneities in microbial populations and implications for physical stress tolerance

scientific article published on 16 July 2012

Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients

scientific article

Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning

scientific article published in 2023

Plasmid-encoded multidrug efflux pump conferring resistance to olaquindox in Escherichia coli

scientific article published on September 2004

Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes

scientific article published on 04 February 2020

Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp. lactis Bi-07.

scientific article

Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial

scientific article published on 22 January 2020

Presence of N-acyl homoserine lactones in soil detected by a whole-cell biosensor and flow cytometry.

scientific article published on 28 March 2003

Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing

scientific article published on 8 February 2012

Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood

scientific article published on 13 February 2018

Quantification of bioavailable chlortetracycline in pig feces using a bacterial whole-cell biosensor

scientific article

Quantification of plasmid loss in Escherichia coli cells by use of flow cytometry

scientific article published on March 2004

Quantitative metagenomic analyses based on average genome size normalization

scientific article published on 11 February 2011

Rapid TaqMan-based quantification of chlorophyll d-containing cyanobacteria in the genus Acaryochloris

scientific article

Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season

scientific article

Rifaximin has minor effects on bacterial composition, inflammation and bacterial translocation in cirrhosis; A randomized trial

scientific article

Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms

scientific article published on 03 March 2020

Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments

scientific article published on 06 September 2019

Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure

scientific article

Sequence and comparative analysis of Leuconostoc dairy bacteriophages

scientific article published on 5 February 2014

Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae

scientific article published on 23 July 2012

Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal: microbial community composition and dynamics

scientific article

Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year

scientific article

Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming

article

Short- and long-term impacts of azithromycin treatment on the gut microbiota in children: A double-blind, randomized, placebo-controlled trial

scientific article published on 23 November 2018

Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission

scientific article published on 2 March 2015

Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes

scientific article published on 27 September 2013

Soil amendment with sewage sludge affects soil prokaryotic community composition, mobilome and resistome

article

Soil bacteria show different tolerance ranges to an unprecedented disturbance

Specificity and stability of the Acromyrmex-Pseudonocardia symbiosis.

scientific article

Stability and resilience of the intestinal microbiota in children in daycare - a 12 month cohort study

scientific article published on 22 December 2018

Studying Bacterial Multispecies Biofilms: Where to Start?

scientific article published on 19 March 2016

Studying plasmid horizontal transfer in situ: a critical review

scientific article

Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria

scientific article published on 24 May 2007

Survival of Escherichia coli K12 in seawater

scholarly article by Søren J Sørensen published April 1991 in FEMS Microbiology Ecology

Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids: a randomized, double-blinded cross-over trial

scientific article

Synergistic Interactions in Microbial Biofilms Facilitate the Establishment of Opportunistic Pathogenic Fungi in Household Dishwashers

scientific article published on 30 January 2018

Synergistic Interactions within a Multispecies Biofilm Enhance Individual Species Protection against Grazing by a Pelagic Protozoan

scientific article published in January 2017

Tailings microbial community profile and prediction of its functionality in basins of tungsten mine

scientific article published on 20 December 2019

Temporal oral microbiome changes with brushing in children with cleft lip and palate

scientific article published on 18 March 2021

The Effect of Longterm Exposure to Mercury on the Bacterial Community in Marine Sediment ⬇️

scientific article published on 01 May 1998

The Effect of the lacY Gene on the Induction of IPTG Inducible Promoters, Studied in Escherichia coli and Pseudomonas fluorescens ⬇️

scientific article published on June 1, 1998

The Use of Whole-Cell Biosensors to Detect and Quantify Compounds or Conditions Affecting Biological Systems

scientific article published on 01 December 2001

The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains.

scientific article published on 22 November 2012

The bacterial microbiota in first-void urine from men with and without idiopathic urethritis

scientific article published in PLoS ONE

The cda GenoTox assay: a new and sensitive method for detection of environmental genotoxins, including nitroarenes and aromatic amines

scientific article published on 21 April 2007

The developing hypopharyngeal microbiota in early life

scientific article published on 30 December 2016

The diversity and function of soil microbial communities exposed to different disturbances.

scientific article published on 30 April 2002

The effect of acetate on population heterogeneity in different cellular characteristics of Escherichia coli in aerobic batch cultures

article

The effect of long-term mercury pollution on the soil microbial community

scientific article published on 01 June 2001

The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR.

scientific article published on 20 November 2011

The fate of mercury in Arctic terrestrial and aquatic ecosystems, a review

article

The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors

scientific article published on 02 June 2011

The giraffe (Giraffa camelopardalis) rumen microbiome

scientific article

The impact of the conjugative IncP-1 plasmid pKJK5 on multispecies biofilm formation is dependent on the plasmid host

scientific article published on 3 June 2013

The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity

scientific article published on 04 September 2020

The interconnection between biofilm formation and horizontal gene transfer

scientific article published on 23 April 2012

The microbiome of captive hamadryas baboons

scientific article published on 16 July 2020

The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established α, β and δ sub-groups

scholarly article by Martin Iain Bahl et al published July 2007 in Plasmid

The murine lung microbiome in relation to the intestinal and vaginal bacterial communities

scientific article

The needle mycobiome of Picea glauca – A dynamic system reflecting surrounding environment and tree phenological traits

scientific article published on 08 July 2019

The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria

scientific article

The prevalence of the OqxAB multidrug efflux pump amongst olaquindox-resistant Escherichia coli in pigs

scientific article published in January 2005

The scent of symbiosis: gut bacteria may affect social interactions in leaf-cutting ants

The treasure inside barley seeds: microbial diversity and plant beneficial bacteria

scientific article published on 28 October 2021

Transfer of plasmid RP4 in the spermosphere and rhizosphere of barley seedling

scientific article published on 01 January 1998

Type 3 Fimbriae Encoded on Plasmids Are Expressed from a Unique Promoter without Affecting Host Motility, Facilitating an Exceptional Phenotype That Enhances Conjugal Plasmid Transfer

scientific article

Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains

scientific article

Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids

scientific article published on 01 February 2020

Use of a PNA probe to block DNA-mediated PCR product formation in prokaryotic RT-PCR.

scientific article published on May 2007

Use of a whole-cell biosensor and flow cytometry to detect AHL production by an indigenous soil community during decomposition of litter

scientific article

Utilization of phenoxyacetic acid, by strains using either the ortho or meta cleavage of catechol during phenol degradation, after conjugal transfer of tfdA , the gene encoding a 2,4-dichlorophenoxyacetic acid/2-oxoglutarate dioxygenase

article

Vitamin D and allergic airway disease shape the murine lung microbiome in a sex-specific manner

scientific article published on 21 September 2016

Whole-Genome Sequence of Pseudomonas fluorescens EK007-RG4, a Promising Biocontrol Agent against a Broad Range of Bacteria, Including the Fire Blight Bacterium Erwinia amylovora

scientific article published on 30 March 2017

coagulases are exploitable yet stable public goods in clinically relevant conditions

scientific article

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