List of works by Pankaj Jaiswal

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

scientific article (publication date: 29 May 2013)

A nucleus-encoded maize protein with sigma factor activity accumulates in mitochondria and chloroplasts.

scientific article published in July 2002

AISO: Annotation of Image Segments with Ontologies

scientific article

Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching.

scientific article published on 12 February 2018

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

article

An ontology approach to comparative phenomics in plants

scientific article

Biological ontologies in rice databases. An introduction to the activities in Gramene and Oryzabase

scientific article

Comparative analysis of predicted plastid-targeted proteomes of sequenced higher plant genomes

scientific article

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

scientific article published in 2021

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

scientific article

De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum

scientific article

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides

scientific article

Drought induces epitranscriptome and proteome changes in stem-differentiating xylem of <i>Populus trichocarpa</i>

scientific article published in 2022

Emerging semantics to link phenotype and environment

scientific article

Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis

scientific article published on 3 November 2014

Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis

scientific article published on 8 January 2015

Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.

scientific article

Expression Atlas: gene and protein expression across multiple studies and organisms.

scientific article

Expression, splicing, and evolution of the myosin gene family in plants

scientific article published on 13 January 2011

Finding our way through phenotypes

scientific article

FragariaCyc: A Metabolic Pathway Database for Woodland Strawberry Fragaria vesca

scientific article

Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules

scientific article

Gramene 2013: comparative plant genomics resources.

scientific article

Gramene 2016: comparative plant genomics and pathway resources

scientific article

Gramene 2018: unifying comparative genomics and pathway resources for plant research

scientific article

Gramene Database: Navigating Plant Comparative Genomics Resources

scientific article

Gramene QTL database: development, content and applications

scientific article published on 08 May 2009

Gramene database in 2010: updates and extensions

scientific article (publication date: 2011)

Gramene, a tool for grass genomics

scientific article

Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways

scientific article published on January 2016

Gramene: a bird's eye view of cereal genomes

scientific article

Gramene: a growing plant comparative genomics resource

scientific article

Gramene: a resource for comparative grass genomics

scientific article published on January 2002

Gramene: development and integration of trait and gene ontologies for rice

scientific article published on January 2002

Intraplastidial trafficking of a phage-type RNA polymerase is mediated by a thylakoid RING-H2 protein

scientific article

Involving community in genes and pathway curation

article

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

scientific article published on 22 February 2021

Ontologies as integrative tools for plant science

scientific article

Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study

scientific article

Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages

scientific article

Plant Pathway Databases

article

Plant Reactome Knowledgebase: empowering plant pathway exploration and OMICS data analysis

scientific article published on 20 November 2023

Plant Reactome: a resource for plant pathways and comparative analysis

scientific article published on 30 October 2016

Planteome 2024 Update: Reference Ontologies and Knowledgebase for Plant Biology

scientific article published on 6 December 2023

Planteome annotation wiki

scientific article published on 20 March 2012

QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice.

scientific article

Quantitative Trait Loci Associated with the Tocochromanol (Vitamin E) Pathway in Barley.

scientific article published on 24 July 2015

Sequencing and de novo transcriptome assembly of Brachypodium sylvaticum (Poaceae). ⬇️

scientific article

The Gene Ontology knowledgebase in 2023

scientific article published in 2023

The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems

scientific article published on 25 September 2020

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations

scientific article

The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species

scientific article published on 04 June 2019

The Plant Ontology: A Tool for Plant Genomics

scientific article published on January 2016

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

scientific article

The floral transcriptome of Eucalyptus grandis.

scientific article published on 29 October 2014

The generation challenge programme platform: semantic standards and workbench for crop science

scientific article

The genome of Eucalyptus grandis

scientific article

The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster ⬇️

scientific article

The genome of woodland strawberry (Fragaria vesca)

scientific article

The plant ontology as a tool for comparative plant anatomy and genomic analyses

scientific article published on 5 December 2012

The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant

scientific article

Variant Effect Prediction Analysis Using Resources Available at Gramene Database.

scientific article published on January 2017

VitisCyc: a metabolic pathway knowledgebase for grapevine (Vitis vinifera).

scientific article

Whole-plant growth stage ontology for angiosperms and its application in plant biology

scientific article

WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks

scientific article (publication date: 29 May 2013)

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