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List of works by Brett Trost

A Comparison of the Chicken and Turkey Proteomes and Phosphoproteomes in the Development of Poultry-Specific Immuno-Metabolism Kinome Peptide Arrays

scientific article published on 13 November 2014

A Comprehensive Workflow for Read Depth-Based Identification of Copy-Number Variation from Whole-Genome Sequence Data

scientific article published in January 2018

A large data resource of genomic copy number variation across neurodevelopmental disorders

scientific article published on 07 October 2019

A systematic approach for analysis of peptide array kinome data

scientific article

Analysis and comparison of the pan-genomic properties of sixteen well-characterized bacterial genera

scientific article

Bacterial peptides are intensively present throughout the human proteome

scientific article published on January 2010

Case study: using sequence homology to identify putative phosphorylation sites in an evolutionarily distant species (honeybee).

scientific article published on 6 November 2014

Characterization of the host response to pichinde virus infection in the Syrian golden hamster by species-specific kinome analysis

scientific article

Chromosomal-level reference genome assembly of the North American wolverine (<i>Gulo gulo luscus</i>): a resource for conservation genomics

scientific article published in 2022

Codon number shapes peptide redundancy in the universal proteome composition

article

Comparing the similarity of different groups of bacteria to the human proteome

scientific article

Complex Autism Spectrum Disorder with Epilepsy, Strabismus and Self-Injurious Behaviors in a Patient with a De Novo Heterozygous <i>POLR2A</i> Variant

scientific article published on 07 March 2022

Computational Analysis of the Predicted Evolutionary Conservation of Human Phosphorylation Sites

scientific article

Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights ⬇️

scientific article published on January 22, 2013

Computational prediction of eukaryotic phosphorylation sites ⬇️

scientific article published on September 16, 2011

Concordance between RNA-sequencing data and DNA microarray data in transcriptome analysis of proliferative and quiescent fibroblasts

scientific article

Conservation of kinase-phosphorylation site pairings: Evidence for an evolutionarily dynamic phosphoproteome

scientific article published in PLoS ONE

DAPPLE: a pipeline for the homology-based prediction of phosphorylation sites.

scientific article

De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis)

scientific article

Divergent Immune Responses to Mycobacterium avium subsp. paratuberculosis Infection Correlate with Kinome Responses at the Site of Intestinal Infection ⬇️

scientific article published on May 28, 2013

Ebola virus modulates transforming growth factor β signaling and cellular markers of mesenchyme-like transition in hepatocytes

scientific article

EpIC: a rational pipeline for epitope immunogenicity characterization

scientific article

Equivalent input produces different output in the UniFrac significance test

scientific article published on 13 August 2014

Genome-wide detection of tandem DNA repeats that are expanded in autism

scientific article published on 27 July 2020

Glutaminase Deficiency Caused by Short Tandem Repeat Expansion in

scientific article published on 01 April 2019

Impact of DNA source on genetic variant detection from human whole-genome sequencing data

scientific article published on 12 September 2019

Induction of tissue- and stressor-specific kinomic responses in chickens exposed to hot and cold stresses

scientific article published on April 2015

Investigation of the cause of geographic disparities in IDEXX ELISA sensitivity in serum samples from Mycobacterium bovis-infected cattle.

scientific article published on 7 March 2016

Length of Uninterrupted CAG, Independent of Polyglutamine Size, Results in Increased Somatic Instability, Hastening Onset of Huntington Disease

scientific article published on 16 May 2019

No human protein is exempt from bacterial motifs, not even one.

scientific article published on October 2010

PIIKA 2: an expanded, web-based platform for analysis of kinome microarray data

scientific article

Pentamers not found in the universal proteome can enhance antigen specific immune responses and adjuvant vaccines

scientific article

Peptidology: short amino acid modules in cell biology and immunology.

scientific article published on 2 November 2006

Rapamycin reduces fibroblast proliferation without causing quiescence and induces STAT5A/B-mediated cytokine production

scientific article published on 10 December 2015

Rare peptide segments are found significantly more often in proto-oncoproteins than control proteins: implications for immunology and oncology

scientific article published on January 2009

Rare tandem repeat expansions associate with genes involved in synaptic and neuronal signaling functions in schizophrenia

scientific article published in 2022

Statistical characterization of the GxxxG glycine repeats in the flagellar biosynthesis protein FliH and its Type III secretion homologue YscL

scientific article

Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools

scientific article published on 24 March 2007

Systems Kinomics Demonstrates Congo Basin Monkeypox Virus Infection Selectively Modulates Host Cell Signaling Responses as Compared to West African Monkeypox Virus ⬇️

scientific article published on December 28, 2011

The Personal Genome Project Canada: findings from whole genome sequences of the inaugural 56 participants

scientific article published in February 2018

Transcriptome analysis of response to Plasmodiophora brassicae infection in the Arabidopsis shoot and root

scientific article published on 5 January 2018

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