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List of works by Matteo Pellegrini

A Designed Inhibitor of p53 Aggregation Rescues p53 Tumor Suppression in Ovarian Carcinomas

scientific article published on 30 December 2015

A Genome-Wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence

scientific article published on 23 March 2015

A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging

scientific article

A combined algorithm for genome-wide prediction of protein function

scientific article (publication date: 4 November 1999)

A comparative analysis of DNA methylation across human embryonic stem cell lines

scientific article published on 6 July 2011

A comparison between whole transcript and 3' RNA sequencing methods using Kapa and Lexogen library preparation methods

A complex network of interactions governs DNA methylation at telomeric regions

scientific article published on 01 February 2022

A comprehensive resource of genomic, epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum.

scientific article

A high-content screen identifies drugs that restrict tumor cell extravasation across the endothelial barrier

scientific article published on 20 November 2020

A high-throughput screen of inactive X chromosome reactivation identifies the enhancement of DNA demethylation by 5-aza-2'-dC upon inhibition of ribonucleotide reductase

scientific article

A large-scale zebrafish gene knockout resource for the genome-wide study of gene function

scientific article published on 4 February 2013

A multi-tissue full lifespan epigenetic clock for mice

A naïve Bayesian classifier for identifying plant microRNAs

scientific article published on 7 April 2016

A new constrained Langevin method: application to protein crystallographic refinement

article by Matteo Pellegrini et al published December 1998 in Physica A

A panel of CpG methylation sites distinguishes human embryonic stem cells and induced pluripotent stem cells

scientific article published on 26 December 2013

A primer on regression methods for decoding cis-regulatory logic

scientific article

A rat epigenetic clock recapitulates phenotypic aging and co-localizes with heterochromatin

scientific article published on 12 November 2020

A revised mineral nutrient supplement increases biomass and growth rate in Chlamydomonas reinhardtii

scientific article

AID-induced genotoxic stress promotes B cell differentiation in the germinal center via ATM and LKB1 signaling

scientific article published on September 2010

ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing.

scientific article published on 07 June 2009

Abf1 and other general regulatory factors control ribosome biogenesis gene expression in budding yeast

scientific article

Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX.

scientific article published on 15 July 2017

Adenovirus small E1A employs the lysine acetylases p300/CBP and tumor suppressor Rb to repress select host genes and promote productive virus infection.

scientific article published on 12 November 2014

Age-associated DNA methylation changes in <i>Xenopus</i> frogs

scientific article published in 2023

Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data

scientific article

All-trans retinoic acid-triggered antimicrobial activity against Mycobacterium tuberculosis is dependent on NPC2.

scientific article published on 05 February 2014

Altered methylation of specific DNA loci in the liver of Bhmt-null mice results in repression of Iqgap2 and F2rl2 and is associated with development of preneoplastic foci

scientific article

Alu RNA Modulates the Expression of Cell Cycle Genes in Human Fibroblasts

scientific article published on 05 July 2019

An asthma-associated IL4R variant exacerbates airway inflammation by promoting conversion of regulatory T cells to TH17-like cells

scientific article published on August 2016

An epigenetic aging clock for dogs and wolves

scientific article

An epigenetic signature in peripheral blood associated with the haplotype on 17q21.31, a risk factor for neurodegenerative tauopathy

scientific article

An improved method for identifying functionally linked proteins using phylogenetic profiles

scientific article

Anti-inflammatory therapies of amyotrophic lateral sclerosis guided by immune pathways

scientific article published on 28 December 2015

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

scientific article (publication date: 13 April 1999)

Astrocytes Can Adopt Endothelial Cell Fates in a p53-Dependent Manner

scientific article published on 8 July 2016

BS Seeker: precise mapping for bisulfite sequencing

scientific article

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data

scientific article

Biased Expression of the FOXP3Δ3 Isoform in Aggressive Bladder Cancer Mediates Differentiation and Cisplatin Chemotherapy Resistance

scientific article published on 17 May 2016

Bio-crude transcriptomics: gene discovery and metabolic network reconstruction for the biosynthesis of the terpenome of the hydrocarbon oil-producing green alga, Botryococcus braunii race B (Showa)

scientific article (publication date: 30 October 2012)

Bioinformatic challenges for the next decade(s).

scientific article

CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data

scientific article published on 18 September 2017

CRISPR-Mediated VHL Knockout Generates an Improved Model for Metastatic Renal Cell Carcinoma

scientific article published on 30 June 2016

CRISPR/Cas9-Mediated Correction of the Sickle Mutation in Human CD34+ cells

scientific article published on 13 July 2016

Cardiac Fibroblasts Adopt Osteogenic Fates and Can Be Targeted to Attenuate Pathological Heart Calcification.

scientific article published on 15 November 2016

Cardiac fibroblast proliferation rates and collagen expression mature early and are unaltered with advancing age

scientific article published on 12 November 2020

Cell-type deconvolution with immune pathways identifies gene networks of host defense and immunopathology in leprosy

scientific article published on 22 September 2016

Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells

scientific article published on 16 December 2013

Chlamydomonas Genome Resource for Laboratory Strains Reveals a Mosaic of Sequence Variation, Identifies True Strain Histories, and Enables Strain-Specific Studies.

scientific article published on 25 August 2015

Chromosome-level genome assembly and transcriptome of the green alga Chromochloris zofingiensis illuminates astaxanthin production

scientific article

Comparison of molecular signatures from multiple skin diseases identifies mechanisms of immunopathogenesis.

scientific article published on 11 August 2014

Comparison of reprogramming factor targets reveals both species-specific and conserved mechanisms in early iPSC reprogramming

Comparison of the Mitochondrial Genomes and Steady State Transcriptomes of Two Strains of the Trypanosomatid Parasite, Leishmania tarentolae

scientific article published on 23 July 2015

Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

scientific article published in March 2018

Computational method to assign microbial genes to pathways

article

Computational methods for protein function analysis.

scientific article

Conditional Depletion of the Chlamydomonas Chloroplast ClpP Protease Activates Nuclear Genes Involved in Autophagy and Plastid Protein Quality Control

scientific article published on 30 May 2014

Conservation and divergence of methylation patterning in plants and animals

scientific article

Copper response regulator1-dependent and -independent responses of the Chlamydomonas reinhardtii transcriptome to dark anoxia

scientific article published on 6 September 2013

Copy number variation influences gene expression and metabolic traits in mice

scientific article published on 31 July 2009

Corrigendum: SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation

scientific article published on 8 February 2017

Cross-species analysis of genic GC3 content and DNA methylation patterns.

scientific article published on January 2013

Cutaneous wound healing through paradoxical MAPK activation by BRAF inhibitors

scientific article

Cytoreductive conditioning intensity predicts clonal diversity in ADA-SCID retroviral gene therapy patients

scientific article

DNA Methylation Indicates Susceptibility to Isoproterenol-Induced Cardiac Pathology and Is Associated With Chromatin States

scientific article published on 11 January 2016

DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees

scientific article published on 13 March 2012

DNA methylation estimation using methylation-sensitive restriction enzyme bisulfite sequencing (MREBS)

Defining interacting partners for drug discovery

scientific article

Detecting communities based on network topology

scientific article

Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression

scientific article

Detection of parallel functional modules by comparative analysis of genome sequences

scientific article published on 01 February 2005

Determining DNA methylation profiles using sequencing

scientific article

Determining the conservation of DNA methylation in Arabidopsis

scientific article published in February 2009

Development of effective therapy for sporadic ALS

article

Directed strain evolution restructures metabolism for 1-butanol production in minimal media

Discovering communities in complex networks by edge label propagation

scientific article published on March 2016

Distinct Shifts in Microbiota Composition during Drosophila Aging Impair Intestinal Function and Drive Mortality

scientific article published on 26 August 2015

Divergence in Morris Water Maze-Based Cognitive Performance under Chronic Stress Is Associated with the Hippocampal Whole Transcriptomic Modification in Mice

scientific article published on 30 August 2017

Dynamic Changes in the Transcriptome and Methylome of Chlamydomonas reinhardtii throughout Its Life Cycle.

scientific article published on 8 October 2015

Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression

scientific article

Endogenous CCL2 neutralization restricts HIV-1 replication in primary human macrophages by inhibiting viral DNA accumulation

scientific article

Epigenetic Suppression of Transgenic T-cell Receptor Expression via Gamma-Retroviral Vector Methylation in Adoptive Cell Transfer Therapy

scientific article published on 22 July 2020

Epigenetic analysis: ChIP-chip and ChIP-seq

scientific article

Epigenetic changes in T-cell and monocyte signatures and production of neurotoxic cytokines in ALS patients

scientific article published on July 2016

Epigenetic changes mediated by polycomb repressive complex 2 and E2a are associated with drug resistance in a mouse model of lymphoma.

scientific article published on 4 May 2016

Epigenetic differences between shoots and roots in Arabidopsis reveals tissue-specific regulation

scientific article published on 29 October 2013

Epigenetic reprogramming by adenovirus e1a.

scientific article

Epigenome-wide association in adipose tissue from the METSIM cohort

scientific article published on 16 March 2018

Epigenome-wide association in adipose tissue from the METSIM cohort.

scientific article published in July 2018

Epigenome-wide association of liver methylation patterns and complex metabolic traits in mice

scientific article

Erratum to: Endogenous CCL2 neutralization restricts HIV-1 replication in primary human macrophages by inhibiting viral DNA accumulation

scientific article published on 9 June 2015

Estrogen and progesterone together expand murine endometrial epithelial progenitor cells

scientific article published on April 2013

Evolution of an expanded sex-determining locus in Volvox

scientific article

Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli

scientific article

Evolutionary dynamics and information hierarchies in biological systems

scientific article published on 20 May 2013

Expression profile of CREB knockdown in myeloid leukemia cells

scientific article

Extracellular traps released by antimicrobial TH17 cells contribute to host defense

scientific article published on 19 November 2020

FamAnn: an automated variant annotation pipeline to facilitate target discovery for family-based sequencing studies

scientific article published on 13 January 2014

Fibroblasts in heart scar tissue directly regulate cardiac excitability and arrhythmogenesis

scientific article published on 28 September 2023

First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae)

scientific article

Functional reprogramming of regulatory T cells in the absence of Foxp3

scientific article published on 05 August 2019

Gene expression and nucleotide composition are associated with genic methylation level in Oryza sativa

scientific article published on 21 January 2014

Genetic Tagging During Human Mesoderm Differentiation Reveals Tripotent Lateral Plate Mesodermal Progenitors

scientific article published on 02 March 2016

Genetic mechanisms of immune evasion in colorectal cancer

scientific article published on 6 March 2018

Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype

scientific article

Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa

scientific article published on 3 August 2012

Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis

scientific article

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

scientific article published on 09 June 2009

Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study

scientific article published on 14 September 2020

Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana

scientific article

Genome-wide binding map of the HIV-1 Tat protein to the human genome

scientific article

Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency.

scientific article

Genome-wide evaluation of histone methylation changes associated with leaf senescence in Arabidopsis

scientific article

Genome-wide gene order distances support clustering the gram-positive bacteria

scientific article

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

scientific article

Genome-wide signature of local adaptation linked to variable CpG methylation in oak populations

scientific article

Genomewide clonal analysis of lethal mutations in the Drosophila melanogaster eye: comparison of the X chromosome and autosomes

scientific article

Gestational food restriction decreases placental interleukin-10 expression and markers of autophagy and endoplasmic reticulum stress in murine intrauterine growth restriction

scientific article published on 5 August 2016

Global phosphoproteomics reveals crosstalk between Bcr-Abl and negative feedback mechanisms controlling Src signaling

scientific article

Glucose inhibits cardiac muscle maturation through nucleotide biosynthesis

scientific article

Hematopoiesis under telomere attrition at the single-cell resolution

scientific article published on 25 November 2021

High Resolution Mapping of Chromatin Conformation in Cardiac Myocytes Reveals Structural Remodeling of the Epigenome in Heart Failure

scientific article

High-quality genome and methylomes illustrate features underlying evolutionary success of oaks

scientific article published on 19 April 2022

High-throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild iso

scientific article

Human Embryonic Stem Cells Do Not Change Their X Inactivation Status during Differentiation

scientific article published on 15 December 2016

Human antimicrobial cytotoxic T lymphocytes, defined by NK receptors and antimicrobial proteins, kill intracellular bacteria

scientific article published on 01 August 2018

Hybrid mouse diversity panel: a panel of inbred mouse strains suitable for analysis of complex genetic traits

scientific article

Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes

scientific article (publication date: 13 September 2016)

IL-1β Induces the Rapid Secretion of the Antimicrobial Protein IL-26 from Th17 Cells

scientific article published on 24 June 2019

IL-32 is a molecular marker of a host defense network in human tuberculosis.

scientific article published on August 2014

Identification and Characterization of a cis-Regulatory Element for Zygotic Gene Expression in Chlamydomonas reinhardtii.

scientific article published on 26 March 2016

Identification of RNA polymerase III-transcribed Alu loci by computational screening of RNA-Seq data

scientific article

Identification of genes required for de novo DNA methylation in Arabidopsis

scientific article

Identification of novel targets of CSL-dependent Notch signaling in hematopoiesis

scientific article

Identifying cognate binding pairs among a large set of paralogs: the case of PE/PPE proteins of Mycobacterium tuberculosis

scientific article

Imatinib Triggers Phagolysosome Acidification and Antimicrobial Activity against Mycobacterium bovis Bacille Calmette-Guérin in Glucocorticoid-Treated Human Macrophages.

scientific article published on 27 May 2016

Immunotherapy of Mild Cognitive Impairment by ω-3 Supplementation: Why Are Amyloid-β Antibodies and ω-3 Not Working in Clinical Trials?

scientific article published on 30 October 2017

Impact of oxidative stress on ascorbate biosynthesis in Chlamydomonas via regulation of the VTC2 gene encoding a GDP-L-galactose phosphorylase

scientific article published on 5 March 2012

In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse.

scientific article published on 7 April 2015

Increased intermediate M1-M2 macrophage polarization and improved cognition in mild cognitive impairment patients on ω-3 supplementation

scientific article published on 27 September 2016

Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach

scientific article

Inferring protein interactions from phylogenetic distance matrices

scientific article published on 01 November 2003

Insights into the mechanism of cell death induced by saporin delivered into cancer cells by an antibody fusion protein targeting the transferrin receptor 1.

scientific article published on 17 October 2012

Integrative analysis of human protein, function and disease networks

scientific article

Interaction between calpain-1 and HSP90: new insights into the regulation of localization and activity of the protease

scientific article

Intergenerational genomic DNA methylation patterns in mouse hybrid strains

scientific article

Intestinal subepithelial myofibroblasts support the growth of intestinal epithelial stem cells

scientific article published on 6 January 2014

Intrauterine calorie restriction affects placental DNA methylation and gene expression

scientific article published on 21 May 2013

Lethal iron deprivation induced by non-neutralizing antibodies targeting transferrin receptor 1 in malignant B cells

scientific article published on 28 August 2011

Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization

scientific article published on 12 September 2013

Loss of MECP2 Leads to Activation of P53 and Neuronal Senescence.

scientific article published in May 2018

MORC family ATPases required for heterochromatin condensation and gene silencing.

scientific article

Mef2C is a lineage-restricted target of Scl/Tal1 and regulates megakaryopoiesis and B-cell homeostasis

scientific journal article

Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems

scientific article

Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa

scientific article

Modeling solvation contributions to conformational free energy changes of biomolecules using a potential of mean force expansion

article published in 1995

Modeling the regulatory network of histone acetylation in Saccharomyces cerevisiae.

scientific article

Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae

scientific article published on 16 August 2006

Modulation of innate immunity of patients with Alzheimer's disease by omega-3 fatty acids

scientific article

Molecular analyses of human induced pluripotent stem cells and embryonic stem cells

scientific article published on August 2010

Molecular profiling of premalignant lesions in lung squamous cell carcinomas identifies mechanisms involved in stepwise carcinogenesis

scientific article

Mycobacterium tuberculosis Transfer RNA Induces IL-12p70 via Synergistic Activation of Pattern Recognition Receptors within a Cell Network.

scientific article published on 2 April 2018

New transgenic reporters identify somatosensory neuron subtypes in larval zebrafish

scientific article published on 27 September 2012

Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism.

scientific article published on 18 April 2014

Nkx2-5 suppresses the proliferation of atrial myocytes and conduction system

scientific article

Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content.

scientific article published on 31 July 2014

Nonsense-mediated mRNA decay mutes the splicing defects of spliceosome component mutations

scientific article published on 22 October 2009

Novel features of telomere biology revealed by the absence of telomeric DNA methylation

scientific article published on 12 July 2016

Novel stem/progenitor cell population from murine tracheal submucosal gland ducts with multipotent regenerative potential

scientific article

Obsessive–Compulsive Disorder Comorbidity: Clinical Assessment and Therapeutic Implications ⬇️

scientific article published on December 21, 2011

Omega-3 fatty acids increase the unfolded protein response and improve amyloid-β phagocytosis by macrophages of patients with mild cognitive impairment

scientific article published on 20 June 2017

Pancreatic cancer patient survival correlates with DNA methylation of pancreas development genes

scientific article published on 3 June 2015

Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways

scientific article

Phosphoprotein SAK1 is a regulator of acclimation to singlet oxygen in Chlamydomonas reinhardtii

scientific article

Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming

scientific article

Plant hydraulics as a central hub integrating plant and ecosystem function: meeting report for 'Emerging Frontiers in Plant Hydraulics' (Washington, DC, May 2015).

scientific article

Plants regenerated from tissue culture contain stable epigenome changes in rice

scientific article published on 19 March 2013

Plasticity of antimicrobial and phagocytic programs in human macrophages

article by Dennis Montoya et al published 24 October 2018 in Immunology

Potentials of mean force for biomolecular simulations: Theory and test on alanine dipeptide

Prenatal Growth Patterns and Birthweight Are Associated With Differential DNA Methylation and Gene Expression of Cardiometabolic Risk Genes in Human Placentas: A Discovery-Based Approach.

scientific article published on January 2017

Prolinks: a database of protein functional linkages derived from coevolution

scientific article

Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation

scientific article published on February 2008

Propionibacterium acnes bacteriophages display limited genetic diversity and broad killing activity against bacterial skin isolates

scientific article

Protein flexibility in solution and in crystals

article published in 1999

Protein interaction networks

scientific article

Proteomic and genomic approaches reveal critical functions of H3K9 methylation and heterochromatin protein-1γ in reprogramming to pluripotency

scientific article published on 09 June 2013

Pseudotime Analysis Reveals Exponential Trends in DNA Methylation Aging with Mortality Associated Timescales

scientific article published on 22 February 2022

RETRACTED ARTICLE: An apoptosis-enhancing drug overcomes platinum resistance in a tumour-initiating subpopulation of ovarian cancer

retracted scholarly article

RNA-seq analysis of sulfur-deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival

scientific article published on 29 June 2010

Rapid Changes in the Translatome during the Conversion of Growth Cones to Synaptic Terminals

scientific article published on 27 January 2016

Regulation of Marginal Zone B-Cell Differentiation by MicroRNA-146a.

scientific article published on January 2016

Regulation of the yeast metabolic cycle by transcription factors with periodic activities ⬇️

scientific article published on October 12, 2011

Relationship between nucleosome positioning and DNA methylation

scientific article published on 30 May 2010

Remodeling of membrane lipids in iron-starved Chlamydomonas

scientific article published on 27 August 2013

Reorganization of the host epigenome by a viral oncogene

scientific article

Repression of Sox9 by Jag1 is continuously required to suppress the default chondrogenic fate of vascular smooth muscle cells

scientific article

Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival

scientific article

Reversible Regulation of Promoter and Enhancer Histone Landscape by DNA Methylation in Mouse Embryonic Stem Cells

scientific article published on September 2016

Review of the algal biology program within the National Alliance for Advanced Biofuels and Bioproducts

S100A12 Is Part of the Antimicrobial Network against Mycobacterium leprae in Human Macrophages

scientific article

SINGLET OXYGEN RESISTANT 1 links reactive electrophile signaling to singlet oxygen acclimation in Chlamydomonas reinhardtii

scientific article

SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation

scientific article

SaVanT: a web-based tool for the sample-level visualization of molecular signatures in gene expression profiles

scientific article published on 25 October 2017

Scl binds to primed enhancers in mesoderm to regulate hematopoietic and cardiac fate divergence.

scientific article published on 6 January 2015

Scl represses cardiomyogenesis in prospective hemogenic endothelium and endocardium

scientific article published on August 2012

Seed genome hypomethylated regions are enriched in transcription factor genes

article published in the Proceedings of the National Academy of Sciences of the United States of America

Selective demethylation and altered gene expression are associated with ICF syndrome in human-induced pluripotent stem cells and mesenchymal stem cells

scientific article published on 15 July 2014

Sequencing of cancer cell subpopulations identifies micrometastases in a bladder cancer patient

scientific article published on 21 April 2017

Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development

scientific article published on 23 October 2017

Simulations of the thermodynamic properties of a short polyalanine peptide using potentials of mean force

Single-base methylome profiling of the giant kelp Saccharina japonica reveals significant differences in DNA methylation to microalgae and plants

scientific article published on 27 September 2019

Single-cell sequencing of human white adipose tissue identifies new cell states in health and obesity

scientific article

Small molecule inhibition of cAMP response element binding protein in human acute myeloid leukemia cells

scientific article published on 23 May 2016

Species-wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients

scientific article published on 2 February 2016

Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells

scientific article published on 14 February 2013

Stem cell architecture drives myelodysplastic syndrome progression and predicts response to venetoclax-based therapy

scientific article published on 03 March 2022

Systems Nutrigenomics Reveals Brain Gene Networks Linking Metabolic and Brain Disorders.

scientific article published on 13 April 2016

Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage

scientific article published on 5 October 2012

Systems biology approach in Chlamydomonas reveals connections between copper nutrition and multiple metabolic steps

scientific article published on 15 April 2011

Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant

scientific article published on 26 November 2013

Targeted mutagenesis in a human-parasitic nematode

scientific article published on 10 October 2017

The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions

scientific article published on 16 June 2020

The IntAct database: efficient access to fine-grained molecular interaction data

scientific article published on 21 October 2021

The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves

scientific article published on 18 January 2016

The dopamine receptor antagonist trifluoperazine prevents phenotype conversion and improves survival in mouse models of glioblastoma

scientific article published on 01 May 2020

The effects of perinatal testosterone exposure on the DNA methylome of the mouse brain are late-emerging

scientific article

The ontogeny of cKIT+ human primordial germ cells proves to be a resource for human germ line reprogramming, imprint erasure and in vitro differentiation.

scientific article published on 16 December 2012

The path to triacylglyceride obesity in the sta6 strain of Chlamydomonas reinhardtii

scientific article

The proteome of copper, iron, zinc, and manganese micronutrient deficiency in Chlamydomonas reinhardtii

scientific article published on 13 October 2012

Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas

scientific article

Transcriptome and methylome interactions in rice hybrids.

scientific article

Transcriptome sequencing identifies SPL7-regulated copper acquisition genes FRO4/FRO5 and the copper dependence of iron homeostasis in Arabidopsis

scientific article published on 28 February 2012

Transcriptome-wide changes in Chlamydomonas reinhardtii gene expression regulated by carbon dioxide and the CO2-concentrating mechanism regulator CIA5/CCM1.

scientific article

Transcriptomic Modification in the Cerebral Cortex following Noninvasive Brain Stimulation: RNA-Sequencing Approach

scientific article published on 29 December 2016

Unraveling inflammatory responses using systems genetics and gene-environment interactions in macrophages

scientific article

Using Phylogenetic Profiles to Predict Functional Relationships ⬇️

scientific article published on January 1, 2012

Vav3-induced cytoskeletal dynamics contribute to heterotypic properties of endothelial barriers

scientific article published on 01 June 2018

Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps

scientific article

Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis

scientific article

Whole-genome expression analysis of mammalian-wide interspersed repeat elements in human cell lines

scientific article published on 27 December 2016

Widespread use of non-productive alternative splice sites in Saccharomyces cerevisiae

scientific article

X-inactivation in female human embryonic stem cells is in a nonrandom pattern and prone to epigenetic alterations

scholarly article

Zinc deficiency impacts CO2 assimilation and disrupts copper homeostasis in Chlamydomonas reinhardtii

scientific article published on 25 February 2013

let-7 miRNAs can act through notch to regulate human gliogenesis

scientific article

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