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Authors whose works are in public domain in at least one jurisdiction

List of works by Michael P. Washburn

A chemoproteomic portrait of the oncometabolite fumarate

scientific article published on 04 February 2019

A label free quantitative proteomic analysis of the Saccharomyces cerevisiae nucleus

scientific article published on 8 November 2008

A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex

scientific article

A mammalian mediator subunit that shares properties with Saccharomyces cerevisiae mediator subunit Cse2

scientific article

A metazoan ATAC acetyltransferase subunit that regulates mitogen-activated protein kinase signaling is related to an ancient molybdopterin synthase component

scientific article

A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression

scientific article

A role for Yin Yang-1 (YY1) in the assembly of snRNA transcription complexes

scientific article

A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology

scientific article

A structured workflow for mapping human Sin3 histone deacetylase complex interactions using Halo-MudPIT AP-MS.

scientific article published on 29 March 2018

AFF4, a component of the ELL/P-TEFb elongation complex and a shared subunit of MLL chimeras, can link transcription elongation to leukemia

scientific article

ATAC is a double histone acetyltransferase complex that stimulates nucleosome sliding

scientific article published on 9 March 2008

ATXN7L3 and ENY2 Coordinate Activity of Multiple H2B Deubiquitinases Important for Cellular Proliferation and Tumor Growth.

scientific article published on 27 April 2016

Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions

scientific article published on 4 November 2004

Advances in shotgun proteomics and the analysis of membrane proteomes.

scientific article published on 23 August 2010

Affinity purification of protein complexes for analysis by multidimensional protein identification technology.

scientific article published on 24 September 2012

An automated multidimensional protein identification technology for shotgun proteomics

scientific article (publication date: December 2001)

Analysis of protein composition using multidimensional chromatography and mass spectrometry.

scientific article

Analysis of quantitative proteomic data generated via multidimensional protein identification technology

scientific article

Analysis of the heterochromatin protein 1 (HP1) interactome in Drosophila

scientific article published on 25 March 2014

Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors

scientific article

Assembly of the Elongin A Ubiquitin Ligase Is Regulated by Genotoxic and Other Stresses

scientific article published on 15 April 2015

Ataxin-7 and Non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization

scientific article published on 26 July 2019

Author Correction: Merkel cell polyomavirus activates LSD1-mediated blockade of non-canonical BAF to regulate transformation and tumorigenesis

scientific article published on 15 May 2020

BRK phosphorylates SMAD4 for proteasomal degradation and inhibits tumor suppressor FRK to control SNAIL, SLUG, and metastatic potential

scientific article published on 23 October 2019

Binding of Drosophila Polo kinase to its regulator Matrimony is noncanonical and involves two separate functional domains.

scientific article published on 11 March 2013

Biochemical Reduction of the Topology of the Diverse WDR76 Protein Interactome

scientific article published on 09 August 2019

Building protein-protein interaction networks with proteomics and informatics tools.

scientific article

CHD8 associates with human Staf and contributes to efficient U6 RNA polymerase III transcription

scientific article

Characterization of Cullin-box sequences that direct recruitment of Cul2-Rbx1 and Cul5-Rbx2 modules to Elongin BC-based ubiquitin ligases

scientific article published on 10 January 2008

Characterization of a highly conserved histone related protein, Ydl156w, and its functional associations using quantitative proteomic analyses

scientific article published on 22 December 2011

Characterization of human cyclin-dependent kinase 12 (CDK12) and CDK13 complexes in C-terminal domain phosphorylation, gene transcription, and RNA processing

scientific article

Characterization of the yeast trimeric-SAS acetyltransferase complex

scientific article published on 18 January 2005

Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange

scientific article

Chromatin remodeller Fun30Fft3 induces nucleosome disassembly to facilitate RNA polymerase II elongation

scientific article published on 20 February 2017

Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes

scientific article

Conserved abundance and topological features in chromatin-remodeling protein interaction networks

scientific article

Construction of protein interaction networks based on the label-free quantitative proteomics

scientific article published on 01 January 2011

Controlling for gene expression changes in transcription factor protein networks

scientific article

Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

article

Ctk complex-mediated regulation of histone methylation by COMPASS.

scientific article published on 6 November 2006

Cyclin F-mediated degradation of ribonucleotide reductase M2 controls genome integrity and DNA repair

scientific article

Cyclin-dependent kinase-mediated Sox2 phosphorylation enhances the ability of Sox2 to establish the pluripotent state

scientific article

CyclinA2-Cyclin-dependent Kinase Regulates SAMHD1 Protein Phosphohydrolase Domain

scientific article published on 6 April 2015

DNA-PKcs-PIDDosome: a nuclear caspase-2-activating complex with role in G2/M checkpoint maintenance

scientific journal article

DYRK1A protein kinase promotes quiescence and senescence through DREAM complex assembly

scientific article

Deacetylase inhibitors dissociate the histone-targeting ING2 subunit from the Sin3 complex

scientific article

Deciphering the combinatorial histone code

scientific article published on 01 June 2007

Degradation of Cep68 and PCNT cleavage mediate Cep215 removal from the PCM to allow centriole separation, disengagement and licensing.

scientific article published on 15 December 2014

Delayed correlation of mRNA and protein expression in rapamycin-treated cells and a role for Ggc1 in cellular sensitivity to rapamycin

scientific article

Determination of protein interactome of transcription factor Sox2 in embryonic stem cells engineered for inducible expression of four reprogramming factors.

scientific article published on 9 February 2012

Determining protein complex connectivity using a probabilistic deletion network derived from quantitative proteomics

scientific article

Differential HDAC1/2 network analysis reveals a role for prefoldin/CCT in HDAC1/2 complex assembly

scientific article published in Scientific Reports

Differential complex formation via paralogs in the human Sin3 protein interaction network

scientific article published on 28 May 2020

Distinct modes of regulation of the Uch37 deubiquitinating enzyme in the proteasome and in the Ino80 chromatin-remodeling complex

scientific article

Driving biochemical discovery with quantitative proteomics.

scientific article published on 27 September 2010

Driving integrative structural modeling with serial capture affinity purification

scientific article published on 30 November 2020

Drosophila ELMO/CED-12 interacts with Myoblast city to direct myoblast fusion and ommatidial organization

scientific article

Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping

scientific article published on 17 June 2020

Dynamic and Combinatorial Landscape of Histone Modifications during the Intraerythrocytic Developmental Cycle of the Malaria Parasite.

scientific article published on 12 June 2016

Ebselen has dehydroascorbate reductase and thioltransferase-like activities

scientific article published in March 2002

Effect of dynamic exclusion duration on spectral count based quantitative proteomics

scientific article published in August 2009

Endoplasmic reticulum stress-responsive transcription factor ATF6α directs recruitment of the Mediator of RNA polymerase II transcription and multiple histone acetyltransferase complexes

scientific article

Enriching quantitative proteomics with SI(N).

scientific article published in January 2010

Evaluation of clustering algorithms for protein complex and protein interaction network assembly.

scientific article published in June 2009

Evolutionarily conserved multisubunit RBL2/p130 and E2F4 protein complex represses human cell cycle-dependent genes in quiescence

scientific article

Examining the complexity of human RNA polymerase complexes using HaloTag technology coupled to label free quantitative proteomics.

scientific article

FBH1 promotes DNA double-strand breakage and apoptosis in response to DNA replication stress

scientific article

FBH1 promotes DNA double-strand breakage and apoptosis in response to DNA replication stress.

scientific article

FBXL2- and PTPL1-mediated degradation of p110-free p85β regulatory subunit controls the PI(3)K signalling cascade

scientific article

Gcn5 regulates the dissociation of SWI/SNF from chromatin by acetylation of Swi2/Snf2.

scientific article published on December 2010

Gene duplication and neofunctionalization: POLR3G and POLR3GL

scientific article

Generation and analysis of multidimensional protein identification technology datasets

scientific article published in January 2009

Genome comparison and proteomic characterization of Thermus thermophilus bacteriophages P23-45 and P74-26: siphoviruses with triplex-forming sequences and the longest known tails

scientific article published on 15 February 2008

Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage

scientific article published on 11 January 2008

Glutathione dependent reduction of alloxan to dialuric acid catalyzed by thioltransferase (glutaredoxin): a possible role for thioltransferase in alloxan toxicity

scientific article published on 01 January 1997

Glutathione: dehydroascorbate oxidoreductases

scientific article published on 01 January 1995

HIV-1 and HIV-2 exhibit divergent interactions with HLTF and UNG2 DNA repair proteins

scientific article published on 22 June 2016

Harnessing Ionic Selectivity in Acetyltransferase Chemoproteomic Probes

scientific article published on 29 December 2020

Heterochromatin protein 1 (HP1) connects the FACT histone chaperone complex to the phosphorylated CTD of RNA polymerase II.

scientific article

Heterochromatin protein 1a stimulates histone H3 lysine 36 demethylation by the Drosophila KDM4A demethylase

scientific article published on December 2008

Highly reproducible label free quantitative proteomic analysis of RNA polymerase complexes

scientific article

Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling

scientific article published in August 2014

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

scientific article

Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS.

scientific article

Host cell factor and an uncharacterized SANT domain protein are stable components of ATAC, a novel dAda2A/dGcn5-containing histone acetyltransferase complex in Drosophila

scientific article

Human CCAAT/enhancer-binding protein β interacts with chromatin remodeling complexes of the imitation switch subfamily

scientific article published on 23 January 2012

Human family with sequence similarity 60 member A (FAM60A) protein: a new subunit of the Sin3 deacetylase complex

scientific article

Human mediator subunit MED26 functions as a docking site for transcription elongation factors

scientific article

INTS3 controls the hSSB1-mediated DNA damage response

scientific article published on 28 September 2009

Identification and Characterization of a Schizosaccharomyces pombe RNA Polymerase II Elongation Factor with Similarity to the Metazoan Transcription Factor ELL.

scientific article

Identification of FAM111A as an SV40 host range restriction and adenovirus helper factor

scientific article

Identification of stem cells from large cell populations with topological scoring

scientific article published on 14 September 2020

Identification of the dehydroascorbic acid reductase and thioltransferase (Glutaredoxin) activities of bovine erythrocyte glutathione peroxidase

scientific article published on 01 April 1999

Improving Proteomics Mass Accuracy by Dynamic Offline Lock Mass

scientific article published on 16 November 2011

Improving label-free quantitative proteomics strategies by distributing shared peptides and stabilizing variance

scientific article published on 13 April 2015

Lentiviral Vpr usurps Cul4-DDB1[VprBP] E3 ubiquitin ligase to modulate cell cycle

scientific article

Lentiviral Vpx accessory factor targets VprBP/DCAF1 substrate adaptor for cullin 4 E3 ubiquitin ligase to enable macrophage infection

scientific article

Linking H3K79 trimethylation to Wnt signaling through a novel Dot1-containing complex (DotCom)

scientific article

Loss of Drosophila Ataxin-7, a SAGA subunit, reduces H2B ubiquitination and leads to neural and retinal degeneration

scientific article published on February 2014

Loss of KLHL6 promotes diffuse large B-cell lymphoma growth and survival by stabilizing the mRNA decay factor roquin2

scientific article published on 25 April 2018

Merkel cell polyomavirus activates LSD1-mediated blockade of non-canonical BAF to regulate transformation and tumorigenesis

scientific article published on 13 April 2020

Mnd1/Hop2 facilitates Dmc1-dependent interhomolog crossover formation in meiosis of budding yeast

scientific article

Moco biosynthesis and the ATAC acetyltransferase engage translation initiation by inhibiting latent PKR activity

scientific article published on 23 December 2015

Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS

scientific article

Molecular regulation of histone H3 trimethylation by COMPASS and the regulation of gene expression

scientific article published in September 2005

Neuralized-like 1 (Neurl1) targeted to the plasma membrane by N-myristoylation regulates the Notch ligand Jagged1.

scientific article published on 12 December 2007

Nuclear cGMP-dependent kinase regulates gene expression via activity-dependent recruitment of a conserved histone deacetylase complex

scientific article

PARC and CUL7 form atypical cullin RING ligase complexes

scientific article published in March 2007

Parallel identification of new genes in Saccharomyces cerevisiae

scientific article published on August 2002

Perturbation of BRMS1 interactome reveals pathways that impact metastasis

scientific article published on 17 November 2021

Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler

scientific article

Polycomb repressive complex 2-dependent and -independent functions of Jarid2 in transcriptional regulation in Drosophila

scientific article

Polyhydroxybenzoates inhibit ascorbic acid activation of mitochondrial glycerol-3-phosphate dehydrogenase: implications for glucose metabolism and insulin secretion

scientific article published in November 2000

Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation

scientific article published on July 2011

Principles and applications of multidimensional protein identification technology

scientific article published on 01 October 2004

Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics

scholarly article

Proteasome recruitment and activation of the Uch37 deubiquitinating enzyme by Adrm1.

scientific article

Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae

scholarly article

Proteins interacting with cloning scars: a source of false positive protein-protein interactions

scientific article

Proteomic analysis of Sox2-associated proteins during early stages of mouse embryonic stem cell differentiation identifies Sox21 as a novel regulator of stem cell fate.

scientific article published on October 2010

Proteomic and Genomic Analyses of the Rvb1 and Rvb2 Interaction Network upon Deletion of R2TP Complex Components

scientific article published on February 2016

Proteomic survey of metabolic pathways in rice

scientific article

Proteomics reveals a physical and functional link between hepatocyte nuclear factor 4alpha and transcription factor IID.

scientific article published on 05 October 2009

Purification and characterization of a glutathione dependent dehydroascorbate reductase from human erythrocytes

scientific article published on 01 April 1996

Purification of a human SRCAP complex that remodels chromatin by incorporating the histone variant H2A.Z into nucleosomes

scientific article

Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors

scholarly article

Quantitative proteomics

scientific article published in October 2013

Quantitative proteomics demonstrates that the RNA polymerase II subunits Rpb4 and Rpb7 dissociate during transcriptional elongation

scientific article published on 15 February 2013

Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors

scientific article published on 10 April 2007

RUNX proteins desensitize multiple myeloma to lenalidomide via protecting IKZFs from degradation

scientific article published on 13 February 2019

Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins

scientific article published in March 2010

Regulation of H3K4 trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1.

scientific article published on 27 April 2009

Regulation of the CRL4(Cdt2) ubiquitin ligase and cell-cycle exit by the SCF(Fbxo11) ubiquitin ligase

scientific article published on 7 March 2013

Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology

scientific article

Reshaping the Chromatin and Epigenetic Landscapes with Quantitative Mass Spectrometry

scientific article published on 26 January 2016

Role for human mediator subunit MED25 in recruitment of mediator to promoters by endoplasmic reticulum stress-responsive transcription factor ATF6α.

scientific article published on 17 July 2013

Rtr1 is a CTD phosphatase that regulates RNA polymerase II during the transition from serine 5 to serine 2 phosphorylation

scientific article

SCF(Cyclin F) controls centrosome homeostasis and mitotic fidelity through CP110 degradation

scientific article

STRIPAK directs PP2A activity toward MAP4K4 to promote oncogenic transformation of human cells

scientific article published on 08 January 2020

Sample preparation and in-solution protease digestion of proteins for chromatography-based proteomic analysis

scientific article published on 01 August 2008

Scm3 is essential to recruit the histone h3 variant cse4 to centromeres and to maintain a functional kinetochore

scientific article

Serine and SAM Responsive Complex SESAME Regulates Histone Modification Crosstalk by Sensing Cellular Metabolism

scientific article

Shaggy/glycogen synthase kinase 3β and phosphorylation of Sarah/regulator of calcineurin are essential for completion of Drosophila female meiosis

scientific article published on 15 March 2012

Shotgun identification of protein modifications from protein complexes and lens tissue

scientific article

Soft landing for protein chips ⬇️

scientific article published on October 1, 2003

Ssu72 phosphatase-dependent erasure of phospho-Ser7 marks on the RNA polymerase II C-terminal domain is essential for viability and transcription termination.

scientific article

Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex

scientific article

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

article

Statistical similarities between transcriptomics and quantitative shotgun proteomics data

scientific article

Structural analyses of the chromatin remodelling enzymes INO80-C and SWR-C

scientific article published on 12 May 2015

Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicing

scientific article published on 08 November 2021

Structural changes in TAF4b-TFIID correlate with promoter selectivity

scientific article

Suberoylanilide hydroxamic acid (SAHA)-induced dynamics of a human histone deacetylase protein interaction network

scientific article

Subunit composition and substrate specificity of a MOF-containing histone acetyltransferase distinct from the male-specific lethal (MSL) complex

scientific article

Subunit organization of the human INO80 chromatin remodeling complex: an evolutionarily conserved core complex catalyzes ATP-dependent nucleosome remodeling

scientific article

Swi/Snf dynamics on stress-responsive genes is governed by competitive bromodomain interactions

scientific article

TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions.

scientific article published on 08 September 2016

TRIM29 regulates the assembly of DNA repair proteins into damaged chromatin

scientific article

Temporal regulation of gene expression of the Thermus thermophilus bacteriophage P23-45.

scientific article

The ATAC acetyltransferase complex coordinates MAP kinases to regulate JNK target genes

scientific article published on September 2010

The COMPASS family of H3K4 methylases in Drosophila

scientific article

The Enok acetyltransferase complex interacts with Elg1 and negatively regulates PCNA unloading to promote the G1/S transition

scientific article published on 19 May 2016

The H-index of 'an approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database'.

scientific article

The HIR corepressor complex binds to nucleosomes generating a distinct protein/DNA complex resistant to remodeling by SWI/SNF.

scientific article

The Integrator complex controls the termination of transcription at diverse classes of gene targets

scientific article

The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells

scientific article

The Spliceosomal Protein SF3B5 is a Novel Component of Drosophila SAGA that Functions in Gene Expression Independent of Splicing

scientific article

The TDH-GCN5L1-Fbxo15-KBP axis limits mitochondrial biogenesis in mouse embryonic stem cells

scientific article published on 20 March 2017

The ULK1-FBXW5-SEC23B nexus controls autophagy

scientific article published on 31 December 2018

The WHHERE coactivator complex is required for retinoic acid-dependent regulation of embryonic symmetry.

scientific article published on 28 September 2017

The catalytic mechanism of the glutathione-dependent dehydroascorbate reductase activity of thioltransferase (glutaredoxin)

scientific article published on 01 January 1999

The chromatin bound proteome of the human malaria parasite.

scientific article published on 04 February 2020

The continuing evolution of shotgun proteomics.

scientific article

The deubiquitylation activity of Ubp8 is dependent upon Sgf11 and its association with the SAGA complex

scientific article

The essential gene wda encodes a WD40 repeat subunit of Drosophila SAGA required for histone H3 acetylation

scientific article published on October 2006

The human cytoplasmic dynein interactome reveals novel activators of motility.

scientific article published on 18 July 2017

The inhibition of polo kinase by matrimony maintains G2 arrest in the meiotic cell cycle

scientific article

The little elongation complex functions at initiation and elongation phases of snRNA gene transcription

scientific article

The little elongation complex regulates small nuclear RNA transcription

scientific article

The mammalian Mediator complex

scientific article

The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes

scientific article

The role of Mediator and Little Elongation Complex in transcription termination

scientific article published on 26 February 2020

The super elongation complex family of RNA polymerase II elongation factors: gene target specificity and transcriptional output

scientific article

The tumour antigen PRAME is a subunit of a Cul2 ubiquitin ligase and associates with active NFY promoters

scientific article

There is no human interactome.

scientific article published on 14 March 2016

Thermus thermophilus bacteriophage phiYS40 genome and proteomic characterization of virions

scientific article published on 6 September 2006

Topological scoring of protein interaction networks

scientific article published on 08 March 2019

Unraveling the dynamics of protein interactions with quantitative mass spectrometry.

scientific article published on 26 March 2011

Unraveling the ubiquitome of the human malaria parasite

scientific article published on 19 September 2011

Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein

scientific article

WDR76 Co-Localizes with Heterochromatin Related Proteins and Rapidly Responds to DNA Damage

scientific article (publication date: 2016)

YY1 functions with INO80 to activate transcription

scientific article published on 26 August 2007

Yeast Nuak1 phosphorylates histone H3 threonine 11 in low glucose stress by the cooperation of AMPK and CK2 signaling

scientific article published on 29 December 2020

Zic2 is an enhancer-binding factor required for embryonic stem cell specification

scientific article published on February 2015

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