List of works by Tsutomu Suzuki

5-Hydroxymethylcytosine plays a critical role in glioblastomagenesis by recruiting the CHTOP-methylosome complex

scientific journal article

A Comprehensive Genomic Analysis Reveals the Genetic Landscape of Mitochondrial Respiratory Chain Complex Deficiencies

scientific journal article

A biochemical landscape of A-to-I RNA editing in the human brain transcriptome.

scientific article published on 09 January 2014

A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification.

scientific article

A gene involved in modifying transfer RNA is required for fungal pathogenicity and stress tolerance of Colletotrichum lagenarium

article

A hydantoin isoform of cyclic N6-threonylcarbamoyladenosine (ct6A) is present in tRNAs

scientific article

A new method for identifying the amino acid attached to a particular RNA in the cell

scientific article published on 01 March 1996

A novel screening system for self-mRNA targeting proteins.

scientific article

Accurate estimation of 5-methylcytosine in mammalian mitochondrial DNA.

scientific article published on 11 April 2018

Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis

scientific article published on 27 August 2018

Acquisition of the wobble modification in mitochondrial tRNALeu(CUN) bearing the G12300A mutation suppresses the MELAS molecular defect.

scientific article published on 30 January 2006

An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA.

scientific article

An ancient type of MnmA protein is an iron-sulfur cluster-dependent sulfurtransferase for tRNA anticodons

scientific article published on 04 December 2019

An extra tRNAGly(U*CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine

scientific article

Antibiotic susceptibility of mammalian mitochondrial translation

scientific article published on 2 November 2005

Aquifex aeolicus tRNA (N2,N2-guanine)-dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA.

scientific article

Biochemical and Transcriptome-Wide Identification of A-to-I RNA Editing Sites by ICE-Seq

scientific article published on 9 July 2015

Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA.

scientific article published on 24 April 2017

Biochemical identification of A-to-I RNA editing sites by the inosine chemical erasing (ICE) method.

scientific article

Biogenesis and functions of aminocarboxypropyluridine in tRNA

scientific article published on 05 December 2019

Biogenesis and growth phase-dependent alteration of 5-methoxycarbonylmethoxyuridine in tRNA anticodons.

scientific article published on 17 December 2015

Biogenesis and iron-dependency of ribosomal RNA hydroxylation

scientific article published on 23 October 2017

Biogenesis of 2-agmatinylcytidine catalyzed by the dual protein and RNA kinase TiaS.

scientific article

CO2-sensitive tRNA modification associated with human mitochondrial disease.

scientific article

Cdk5rap1-mediated 2-methylthio modification of mitochondrial tRNAs governs protein translation and contributes to myopathy in mice and humans

scientific journal article

Cell-free translation reconstituted with purified components

scientific article published in August 2001

Chaplet column chromatography: isolation of a large set of individual RNAs in a single step

scientific article published on January 2007

Characterization of serine and leucine tRNAs in an asporogenic yeast Candida cylindracea and evolutionary implications of genes for tRNA(Ser)CAG responsible for translation of a non-universal genetic code.

scientific article

Chemical synthesis and properties of 5-taurinomethyluridine and 5-taurinomethyl-2-thiouridine

scientific article published in March 2009

Codon-specific translational defect caused by a wobble modification deficiency in mutant tRNA from a human mitochondrial disease

scholarly article

Complete chemical structures of human mitochondrial tRNAs

scientific article published on 28 August 2020

Comprehensive genetic selection revealed essential bases in the peptidyl-transferase center

scientific article

Conserved bases in the TPsi C loop of tRNA are determinants for thermophile-specific 2-thiouridylation at position 54.

scientific article published on 12 August 2002

Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity

scientific article

Convergent evolution of AUA decoding in bacteria and archaea

scientific article

Correction: Mitochondrial 16S rRNA Is Methylated by tRNA Methyltransferase TRMT61B in All Vertebrates

scientific article published on 19 January 2017

Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification ⬇️

scientific article published on October 23, 2010

Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNA(Glu).

scientific article published on 10 March 2006

Crystallization and preliminary X-ray diffraction analysis of an archaeal tRNA-modification enzyme, TiaS, complexed with tRNA(Ile2) and ATP

scientific article

Crystallization and preliminary X-ray diffraction study of mammalian mitochondrial seryl-tRNA synthetase

scientific article published on 22 June 2004

Decoding mechanism of non-universal genetic codes in Loligo bleekeri mitochondria

scientific article published on 28 January 2013

Decoding system for the AUA codon by tRNAIle with the UAU anticodon in Mycoplasma mobile.

scientific article published on 7 January 2013

Decreased CCA-addition in human mitochondrial tRNAs bearing a pathogenic A4317G or A10044G mutation

scientific article published on 5 March 2003

Defect in modification at the anticodon wobble nucleotide of mitochondrial tRNA(Lys) with the MERRF encephalomyopathy pathogenic mutation.

scientific article published in February 2000

Defective Mitochondrial tRNA Taurine Modification Activates Global Proteostress and Leads to Mitochondrial Disease

scientific article published in January 2018

Deficit of tRNA(Lys) modification by Cdkal1 causes the development of type 2 diabetes in mice

scientific journal article

Defining fundamental steps in the assembly of the Drosophila RNAi enzyme complex.

scientific article

Depletion of S-adenosylmethionine impacts on ribosome biogenesis through hypomodification of a single rRNA methylation

scientific article published on 01 May 2019

Destabilization of microRNAs in human cells by 3' deadenylation mediated by PARN and CUGBP1.

scientific article

Discovery and characterization of tRNAIle lysidine synthetase (TilS).

scientific article published on January 2010

Discovery of the β-barrel-type RNA methyltransferase responsible for N6-methylation of N6-threonylcarbamoyladenosine in tRNAs

scientific journal article

Distinct tRNA modifications in the thermo-acidophilic archaeon, Thermoplasma acidophilum

scientific article

Dual mode recognition of two isoacceptor tRNAs by mammalian mitochondrial seryl-tRNA synthetase.

scientific article

Dual pathways of tRNA hydroxylation ensure efficient translation by expanding decoding capability

scientific article published on 28 June 2019

Duplication of Drosophila melanogaster mitochondrial EF-Tu: pre-adaptation to T-arm truncation and exclusion of bulky aminoacyl residues

scientific article published on 27 January 2017

Expanding Role of the Jumonji C Domain as an RNA Hydroxylase ⬇️

scientific article published on August 25, 2010

Functional Compatibility of Elongation Factors Between Mammalian Mitochondrial and Bacterial Ribosomes: Characterization of GTPase Activity and Translation Elongation by Hybrid Ribosomes Bearing Heterologous L7/12 Proteins

scientific article published on 01 February 2004

Functional genetic selection of Helix 66 in Escherichia coli 23S rRNA identified the eukaryotic-binding sequence for ribosomal protein L2.

scientific article published on 6 June 2007

Hsc70/Hsp90 chaperone machinery mediates ATP-dependent RISC loading of small RNA duplexes

scientific article published on 3 June 2010

Human BCDIN3D monomethylates cytoplasmic histidine transfer RNA

scientific article published on 23 January 2017

Human Mitochondrial mRNAs Are Stabilized with Polyadenylation Regulated by Mitochondria-specific Poly(A) Polymerase and Polynucleotide Phosphorylase

scientific article published in Journal of Biological Chemistry

Hydroxylation of a conserved tRNA modification establishes non-universal genetic code in echinoderm mitochondria.

scientific article published on 7 August 2017

Identification and Functional Analysis of the Pre-piRNA 3' Trimmer in Silkworms

scientific article published on February 2016

Identification and characterization of mammalian mitochondrial tRNA nucleotidyltransferases

scientific article

Identification of 2-methylthio cyclic N6-threonylcarbamoyladenosine (ms2ct6A) as a novel RNA modification at position 37 of tRNAs

scientific article

Identification of the residues involved in the unique serine specificity of Caenorhabditis elegans mitochondrial EF-Tu2.

scientific article published in September 2006

Identification of two tRNA thiolation genes required for cell growth at extremely high temperatures

scientific article published on 17 March 2006

Inosine cyanoethylation identifies A-to-I RNA editing sites in the human transcriptome

scientific article published on 12 September 2010

Intrinsic Ribosome Destabilization Underlies Translation and Provides an Organism with a Strategy of Environmental Sensing

scientific article published in November 2017

Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation.

scientific article published in January 2006

Iron-sulfur proteins responsible for RNA modifications

scientific article

LRPPRC/SLIRP suppresses PNPase-mediated mRNA decay and promotes polyadenylation in human mitochondria

scientific article

Measuring mRNA decay in human mitochondria

scientific article published in January 2008

Mechanism of aminoacyl-tRNA acetylation by an aminoacyl-tRNA acetyltransferase AtaT from enterohemorrhagic E. coli

scientific article published on 28 October 2020

Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions.

scientific article

Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions

scientific article published in January 2006

Mitochondrial 16S rRNA Is Methylated by tRNA Methyltransferase TRMT61B in All Vertebrates

scientific journal article

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding

scientific article

Mtu1-Mediated Thiouridine Formation of Mitochondrial tRNAs Is Required for Mitochondrial Translation and Is Involved in Reversible Infantile Liver Injury

scientific article

Mutation in TRMU related to transfer RNA modification modulates the phenotypic expression of the deafness-associated mitochondrial 12S ribosomal RNA mutations

scientific article

Nucleoside Analysis by Hydrophilic Interaction Liquid Chromatography Coupled with Mass Spectrometry.

scientific article published on 2 June 2015

Poly(A)-specific ribonuclease mediates 3'-end trimming of Argonaute2-cleaved precursor microRNAs

scientific article published on 24 October 2013

Polyadenylation in mammalian mitochondria: insights from recent studies.

scientific article

Precursors of tRNAs are stabilized by methylguanosine cap structures

scientific article

Proteolytic fragmentation of polypeptide release factor 1 of Thermus thermophilus and crystallization of the stable fragments

scientific article published on 01 August 2000

Quantification of methylation efficiency at a specific N6-methyladenosine position in rRNA by using BNA probes

scientific article published on 01 August 2018

RNA editing enzyme ADAR2 is a mediator of neuropathic pain after peripheral nerve injury

scientific article published on 26 January 2017

RNA modifications: what have we learned and where are we headed?

scientific article published on 3 May 2016

Rectifier of aberrant mRNA splicing recovers tRNA modification in familial dysautonomia

scientific article

Regulation of A-to-I RNA editing and stop codon recoding to control selenoprotein expression during skeletal myogenesis

scientific article published on 06 May 2022

Regulation of gene expression via retrotransposon insertions and the noncoding RNA 4.5S RNAH.

scientific article published on 3 September 2015

Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance

scientific article published on 27 April 2022

Reversible infantile respiratory chain deficiency: a clinical and molecular study.

scientific article published on December 2010

Ribosomal RNA methyltransferases contribute to Staphylococcus aureus virulence

scientific article published on 7 May 2015

Ribosomal RNAs are tolerant toward genetic insertions: evolutionary origin of the expansion segments

scientific article

RlmCD-mediated U747 methylation promotes efficient G748 methylation by methyltransferase RlmAII in 23S rRNA in Streptococcus pneumoniae; interplay between two rRNA methylations responsible for telithromycin susceptibility

scientific article published on 13 September 2015

S-Adenosylmethionine Synthesis Is Regulated by Selective N6-Adenosine Methylation and mRNA Degradation Involving METTL16 and YTHDC1.

scientific article published in December 2017

S-peptide as a potent peptidyl linker for protein cross-linking by microbial transglutaminase from Streptomyces mobaraensis

scientific article published in March 2003

Snapshots of tRNA sulphuration via an adenylated intermediate.

scientific article

Specific correlation between the wobble modification deficiency in mutant tRNAs and the clinical features of a human mitochondrial disease

scientific article

Specific residues at every third position of siRNA shape its efficient RNAi activity

scientific article published on 26 January 2007

Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases

scientific article published on 8 December 2016

Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex.

scientific article published in February 2006

Structural basis of tRNA agmatinylation essential for AUA codon decoding

scientific article

Structure-function analysis of human TYW2 enzyme required for the biosynthesis of a highly modified Wybutosine (yW) base in phenylalanine-tRNA.

scientific article

Structures of tRNAs with an expanded anticodon loop in the decoding center of the 30S ribosomal subunit

scientific article

Substrate specificities of Escherichia coli ItaT that acetylates aminoacyl-tRNAs

scientific article published on 05 June 2020

Substrate tRNA recognition mechanism of tRNA (m7G46) methyltransferase from Aquifex aeolicus.

scientific article published on 8 September 2004

Temperature-dependent biosynthesis of 2-thioribothymidine of Thermus thermophilus tRNA.

scientific article

The 7472insC mitochondrial DNA mutation impairs the synthesis and extent of aminoacylation of tRNASer(UCN) but not its structure or rate of turnover

scientific article published on 27 March 2002

The A-site finger in 23 S rRNA acts as a functional attenuator for translocation

scientific article published in September 2006

The R336Q mutation in human mitochondrial EFTu prevents the formation of an active mt-EFTu.GTP.aa-tRNA ternary complex

scientific article published on 12 June 2009

The RNA-binding protein QKI-7 recruits the poly(A) polymerase GLD-2 for 3' adenylation and selective stabilization of microRNA-122

scientific article published on 01 December 2019

The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline

scientific journal article

The gene for serine tRNA having anticodon sequence CAG in a pathogenic yeast, Candida albicans.

scientific article

The ordered transcription of RNA domains is not essential for ribosome biogenesis in Escherichia coli.

scientific article

The pathogenic A4269G mutation in human mitochondrial tRNA(Ile) alters the T-stem structure and decreases the binding affinity for elongation factor Tu.

scientific article published in March 2004

The ribosomal A-site finger is crucial for binding and activation of the stringent factor RelA.

scientific article published on 30 January 2018

The role of tightly bound ATP in Escherichia coli tRNA nucleotidyltransferase

article

The tRNA pseudouridine synthase TruB1 regulates the maturation of let-7 miRNA

scientific article published on 14 September 2020

Thio modification of yeast cytosolic tRNA is an iron-sulfur protein-dependent pathway

scientific article

Transcriptome-wide identification of A-to-I RNA editing sites using ICE-seq

scientific article published on 20 December 2018

Transcriptome-wide identification of adenosine-to-inosine editing using the ICE-seq method.

scientific article published on 9 April 2015

Translation ability of mitochondrial tRNAsSer with unusual secondary structures in an in vitro translation system of bovine mitochondria

scientific article published in December 2001

Trmt61B is a methyltransferase responsible for 1-methyladenosine at position 58 of human mitochondrial tRNAs

scientific article published in December 2012

U2 small nuclear RNA is a substrate for the CCA-adding enzyme (tRNA nucleotidyltransferase).

scientific article published on 7 November 2001

Unique structure of new serine tRNAs responsible for decoding leucine codon CUG in various Candida species and their putative ancestral tRNA genes

scientific article published in January 1994

Unusual usage of wobble modifications in mitochondrial tRNAs of the nematode Ascaris suum

scientific article published on 20 April 2005

Wobble inosine tRNA modification is essential to cell cycle progression in G(1)/S and G(2)/M transitions in fission yeast.

scientific article

Wobble modification defect suppresses translational activity of tRNAs with MERRF and MELAS mutations

scientific article published in November 2002

Wobble modification deficiency in mutant tRNAs in patients with mitochondrial diseases

scientific article published in May 2005

Yeast Nfs1p is involved in thio-modification of both mitochondrial and cytoplasmic tRNAs.

scientific article

molecular mechanism of lysidine synthesis that determines tRNA identity and codon recognition.

scientific article

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