List of works - Marco Severgnini

A novel combined approach based on HTF-Microbi.Array and qPCR for a reliable characterization of the Bifidobacterium-dominated gut microbiota of breast-fed infants

scientific article published on 15 April 2013

A probiotics-containing biscuit modulates the intestinal microbiota in the elderly

scientific article published in February 2013

A structured chitosan-based platform for biomolecule attachment to solid surfaces: application to DNA microarray preparation

scientific article published on 01 March 2006

Acquired copy-neutral loss of heterozygosity of chromosome 1p as a molecular event associated with marrow fibrosis in MPL-mutated myeloproliferative neoplasms

scientific article published on 10 April 2013

Anchoring of unmodified oligonucleotides on a chitosan-based array: applications to genotyping and gene expression.

scientific article

Application of the Taguchi method to the analysis of the deposition step in microarray production.

scientific article published in September 2006

Author Correction: Genome sequencing of Prototheca zopfii genotypes 1 and 2 provides evidence of a severe reduction in organellar genomes

correction of a scholarly article

Behçet's syndrome patients exhibit specific microbiome signature

scientific article

Bifidobacterium animalis ssp. lactis BI07 modulates the tumor necrosis factor alpha-dependent imbalances of the enterocyte-associated intestinal microbiota fraction

scientific article published in 2014

Chromatin organization at the nuclear pore favours HIV replication

scientific article

Comprehensive genomic characterization of cutaneous malignant melanoma cell lines derived from metastatic lesions by whole-exome sequencing and SNP array profiling

scientific article

Deletion of the LTR enhancer/promoter has no impact on the integration profile of MLV vectors in human hematopoietic progenitors

scientific article

Design and validation of a DNA-microarray for phylogenetic analysis of bacterial communities in different oral samples and dental implants.

scientific article published on 24 July 2017

Detection and characterization of pathogenic vibrios in shellfish by a Ligation Detection Reaction-Universal Array approach

scientific article published on 20 November 2011

Detection of food spoilage and pathogenic bacteria based on ligation detection reaction coupled to flow-through hybridization on membranes

scientific article published on 10 April 2014

Development of a microarray-based tool to characterize vaginal bacterial fluctuations and application to a novel antibiotic treatment for bacterial vaginosis

scientific article

Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript

scientific article

Disposable plastic microreactors for genomic analyses.

scientific article published in December 2009

Distribution of ermB, ermF, tet(W), and tet(M) Resistance Genes in the Vaginal Ecosystem of Women during Pregnancy and Puerperium

scientific article published on 01 December 2021

Diversity of bifidobacteria within the infant gut microbiota

scientific article

Diversity of vaginal microbiome and metabolome during genital infections

scientific article published on 01 October 2019

Dynamic Transcriptional and Epigenetic Regulation of Human Epidermal Keratinocyte Differentiation.

scientific article published on 23 March 2016

Expression profiling of genes involved in the formation of aroma in two peach genotypes

article

Genome sequencing of Prototheca zopfii genotypes 1 and 2 provides evidence of a severe reduction in organellar genomes

scientific article published in Scientific Reports

Genome-wide analysis of alpharetroviral integration in human hematopoietic stem/progenitor cells.

scientific article

Genomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer

scientific article

Gut Microbiota and Extreme Longevity

scientific article

Gut microbiome in Down syndrome

scientific article

Gut microbiome of the Hadza hunter-gatherers

scientific article

Gut microbiota trajectory in pediatric patients undergoing hematopoietic SCT.

scientific article published on 20 April 2015

Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transplantation

scientific article published on 04 April 2019

High taxonomic level fingerprint of the human intestinal microbiota by ligase detection reaction--universal array approach

scientific article

Impact of Kamut® Khorasan on gut microbiota and metabolome in healthy volunteers

article

Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota

scientific article published on 14 May 2015

Modulation of gut microbiota dysbioses in type 2 diabetic patients by macrobiotic Ma-Pi 2 diet

scientific article

Nup153 and Nup98 bind the HIV-1 core and contribute to the early steps of HIV-1 replication.

scientific article published on 21 March 2013

Olive variety identification by ligation detection reaction in a universal array format

scientific article published on 09 February 2007

Pathogen detection in milk samples by ligation detection reaction-mediated universal array method.

scientific article

Polymerase chain reaction of 2-kb cyanobacterial gene and human anti-alpha1-chymotrypsin gene from genomic DNA on the In-Check single-use microfabricated silicon chip.

scientific article published on 31 March 2006

Reliable resequencing of the human dystrophin locus by universal long polymerase chain reaction and massive pyrosequencing

scientific article

Retroviral Scanning: Mapping MLV Integration Sites to Define Cell-specific Regulatory Regions

scientific article

Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment

scientific article published on 03 April 2006

The enterocyte-associated intestinal microbiota of breast-fed infants and adults responds differently to a TNF-α-mediated pro-inflammatory stimulus

scientific article

Three novel fusion transcripts of the paired box 5 gene in B-cell precursor acute lymphoblastic leukemia

scientific article published on 10 October 2014

Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment.

scientific article published on 20 April 2016

Unbalance of intestinal microbiota in atopic children

scientific article

WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes

scientific article

List of works by Marco Severgnini

A novel combined approach based on HTF-Microbi.Array and qPCR for a reliable characterization of the Bifidobacterium-dominated gut microbiota of breast-fed infants

A probiotics-containing biscuit modulates the intestinal microbiota in the elderly

A structured chitosan-based platform for biomolecule attachment to solid surfaces: application to DNA microarray preparation

Acquired copy-neutral loss of heterozygosity of chromosome 1p as a molecular event associated with marrow fibrosis in MPL-mutated myeloproliferative neoplasms

Anchoring of unmodified oligonucleotides on a chitosan-based array: applications to genotyping and gene expression.

Application of the Taguchi method to the analysis of the deposition step in microarray production.

Author Correction: Genome sequencing of Prototheca zopfii genotypes 1 and 2 provides evidence of a severe reduction in organellar genomes

Behçet's syndrome patients exhibit specific microbiome signature

Bifidobacterium animalis ssp. lactis BI07 modulates the tumor necrosis factor alpha-dependent imbalances of the enterocyte-associated intestinal microbiota fraction

Chromatin organization at the nuclear pore favours HIV replication

Comprehensive genomic characterization of cutaneous malignant melanoma cell lines derived from metastatic lesions by whole-exome sequencing and SNP array profiling

Deletion of the LTR enhancer/promoter has no impact on the integration profile of MLV vectors in human hematopoietic progenitors

Design and validation of a DNA-microarray for phylogenetic analysis of bacterial communities in different oral samples and dental implants.

Detection and characterization of pathogenic vibrios in shellfish by a Ligation Detection Reaction-Universal Array approach

Detection of food spoilage and pathogenic bacteria based on ligation detection reaction coupled to flow-through hybridization on membranes

Development of a microarray-based tool to characterize vaginal bacterial fluctuations and application to a novel antibiotic treatment for bacterial vaginosis

Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript

Disposable plastic microreactors for genomic analyses.

Distribution of ermB, ermF, tet(W), and tet(M) Resistance Genes in the Vaginal Ecosystem of Women during Pregnancy and Puerperium

Diversity of bifidobacteria within the infant gut microbiota

Diversity of vaginal microbiome and metabolome during genital infections

Dynamic Transcriptional and Epigenetic Regulation of Human Epidermal Keratinocyte Differentiation.

Expression profiling of genes involved in the formation of aroma in two peach genotypes

Genome sequencing of Prototheca zopfii genotypes 1 and 2 provides evidence of a severe reduction in organellar genomes

Genome-wide analysis of alpharetroviral integration in human hematopoietic stem/progenitor cells.

Genomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer

Gut Microbiota and Extreme Longevity

Gut microbiome in Down syndrome

Gut microbiome of the Hadza hunter-gatherers

Gut microbiota trajectory in pediatric patients undergoing hematopoietic SCT.

Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transplantation

High taxonomic level fingerprint of the human intestinal microbiota by ligase detection reaction--universal array approach

Impact of Kamut® Khorasan on gut microbiota and metabolome in healthy volunteers

Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota

Modulation of gut microbiota dysbioses in type 2 diabetic patients by macrobiotic Ma-Pi 2 diet

Nup153 and Nup98 bind the HIV-1 core and contribute to the early steps of HIV-1 replication.

Olive variety identification by ligation detection reaction in a universal array format

Pathogen detection in milk samples by ligation detection reaction-mediated universal array method.

Polymerase chain reaction of 2-kb cyanobacterial gene and human anti-alpha1-chymotrypsin gene from genomic DNA on the In-Check single-use microfabricated silicon chip.

Reliable resequencing of the human dystrophin locus by universal long polymerase chain reaction and massive pyrosequencing

Retroviral Scanning: Mapping MLV Integration Sites to Define Cell-specific Regulatory Regions

Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment

The enterocyte-associated intestinal microbiota of breast-fed infants and adults responds differently to a TNF-α-mediated pro-inflammatory stimulus

Three novel fusion transcripts of the paired box 5 gene in B-cell precursor acute lymphoblastic leukemia

Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment.

Unbalance of intestinal microbiota in atopic children

WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes