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List of works by Jon Slate

A Localized Negative Genetic Correlation Constrains Microevolution of Coat Color in Wild Sheep

scientific article published in Science

A comparison of SNPs and microsatellites as linkage mapping markers: lessons from the zebra finch (Taeniopygia guttata).

scientific article

A comparison of synteny and gene order on the homologue of chicken chromosome 7 between two passerine species and between passerines and chicken

scientific article published on 9 June 2008

A first-generation microsatellite linkage map of the ruff.

scientific article published on 24 October 2013

A genome-wide linkage map for the house sparrow (Passer domesticus) provides insights into the evolutionary history of the avian genome

scientific article published on 31 January 2020

A high density SNP chip for genotyping great tit (Parus major) populations and its application to studying the genetic architecture of exploration behaviour.

scientific article published on 23 March 2018

A linkage map of the zebra finch Taeniopygia guttata provides new insights into avian genome evolution

scientific article published on May 2008

A major QTL for resistance of rice to the parasitic plant Striga hermonthica is not dependent on genetic background

scientific article published in May 2009

A microsatellite-based linkage map for song sparrows (Melospiza melodia).

scientific article published on 11 April 2015

A novel form of resistance in rice to the angiosperm parasite Striga hermonthica.

scientific article published in January 2006

A predicted microsatellite map of the passerine genome based on chicken-passerine sequence similarity

scientific article published in April 2006

A quantitative review of heterozygosity-fitness correlations in animal populations

scientific article published on 04 June 2009

A retrospective assessment of the accuracy of the paternity inference program cervus

scientific article published on 01 June 2000

A road map for molecular ecology

scientific article published on May 2013

A sex-linked supergene controls sperm morphology and swimming speed in a songbird

scientific article published on 17 July 2017

A supergene determines highly divergent male reproductive morphs in the ruff

scientific article

A test and review of the role of effective population size on experimental sexual selection patterns.

scientific article published on 10 March 2009

A test of the efficacy of whole-genome amplification on DNA obtained from low-yield samples

technical article; Molecular Ecology Notes, Volume 7, Issue 3

ANTLER SIZE IN RED DEER: HERITABILITY AND SELECTION BUT NO EVOLUTION

article by Loeske Kruuk et al published 2002 in Evolution

Adaptation genomics: the next generation

scientific article published on 16 October 2010

Admixture and patterns of linkage disequilibrium in a free-living vertebrate population

scientific article published in July 2007

Associations of ATR and CHEK1 single nucleotide polymorphisms with breast cancer

scientific article published on 03 July 2013

Bovine microsatellite loci are highly conserved in red deer (Cervus elaphus), sika deer (Cervus nippon) and Soay sheep (Ovis aries)

scientific article published on 01 August 1998

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing

scientific article

Comparison between Normalised and Unnormalised 454-Sequencing Libraries for Small-Scale RNA-Seq Studies.

scientific article

Compelling evidence that a single nucleotide substitution in TYRP1 is responsible for coat-colour polymorphism in a free-living population of Soay sheep

article

Conserved Genetic Architecture Underlying Individual Recombination Rate Variation in a Wild Population of Soay Sheep (Ovis aries)

scientific article published on 30 March 2016

Cost, risk, and avoidance of inbreeding in a cooperatively breeding bird

scientific article published on 22 June 2020

Detecting genes for variation in parasite burden and immunological traits in a wild population: testing the candidate gene approach

scientific article published on 24 September 2012

Development of a linkage map and mapping of phenotypic polymorphisms in a free-living population of Soay sheep (Ovis aries)

scientific article

Development of a predicted physical map of microsatellite locus positions for pinnipeds, with wider applicability to the Carnivora

article

Digital gene expression analysis of the zebra finch genome

scientific article

Does reduced heterozygosity depress sperm quality in wild rabbits (Oryctolagus cuniculus)?

Estimating the prevalence of inbreeding from incomplete pedigrees.

scientific article published in August 2002

Evidence of inbreeding depression but not inbreeding avoidance in a natural house sparrow population

scientific article

Evolutionary analysis and expression profiling of zebra finch immune genes

scientific article published on 30 September 2010

Evolutionary signals of selection on cognition from the great tit genome and methylome.

scientific article published on 25 January 2016

Female multiple mating and paternity in free-ranging North American red squirrels

article by Jeffrey E. Lane et al published June 2008 in Animal Behaviour

Fine-scale genetic structure in a wild bird population: the role of limited dispersal and environmentally based selection as causal factors

scientific article published on 29 April 2013

Fine-scale population structure, inbreeding risk and avoidance in a wild insect population

scientific article published on 7 June 2011

Fluctuating asymmetry in a secondary sexual trait: no associations with individual fitness, environmental stress or inbreeding, and no heritability

scientific article published in January 2003

From beavis to beak color: a simulation study to examine how much qtl mapping can reveal about the genetic architecture of quantitative traits ⬇️

scientific article published on February 28, 2013

Gene mapping in the wild with SNPs: guidelines and future directions.

scientific article published on 09 September 2008

Gene order and recombination rate in homologous chromosome regions of the chicken and a passerine bird.

scientific article

Genetic mapping of the female mimic morph locus in the ruff

scientific article

Genetic mapping of the major histocompatibility complex in the zebra finch (Taeniopygia guttata).

scientific article published on 15 April 2011

Genetic relatedness of mates does not predict patterns of parentage in North American red squirrels

article by Jeffrey E. Lane et al published September 2007 in Animal Behaviour

Genome mapping in intensively studied wild vertebrate populations.

scientific article

Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population

article

Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population

scientific article published in August 2013

Genotype by environment interactions in winter survival in red deer

article

Global patterns of gene expression in rice cultivars undergoing a susceptible or resistant interaction with the parasitic plant Striga hermonthica

scientific article published on 01 July 2008

Heterozygote advantage for fecundity

scientific article published on 27 December 2006

High-utility conserved avian microsatellite markers enable parentage and population studies across a wide range of species

scientific article

Highly variable recombinational landscape modulates efficacy of natural selection in birds

scientific article published on August 2014

Horn type and horn length genes map to the same chromosomal region in Soay sheep

scientific article (publication date: 19 August 2009)

Inbreeding causes early death in a passerine bird ⬇️

scientific article published on May 29, 2012

Introgression and the fate of domesticated genes in a wild mammal population

scientific article published on 20 June 2013

Isolation of 18 polymorphic microsatellite loci from the North American red squirrel, Tamiasciurus hudsonicus (Sciuridae, Rodentia), and their cross-utility in other species

article

Life history trade-offs at a single locus maintain sexually selected genetic variation

scientific article published on 21 August 2013

Linkage mapping reveals sex-dimorphic map distances in a passerine bird

scientific article published in November 2005

Localization of quantitative trait loci for diapause and other photoperiodically regulated life history traits important in adaptation to seasonally varying environments

scientific article published on 19 May 2015

Long sperm fertilize more eggs in a bird.

scientific article published in January 2015

MAPPING QUANTITATIVE TRAIT LOCI UNDERLYING FITNESS-RELATED TRAITS IN A FREE-LIVING SHEEP POPULATION

MICROSATELLITE MEASURES OF INBREEDING: A META-ANALYSIS

article

Males and females contribute unequally to offspring genetic diversity in the polygynandrous mating system of wild boar

scientific article

Microsatellite Loci Reveal Sex-Dependent Responses to Inbreeding and Outbreeding in Red Deer Calves

article

Microsatellites reveal heterosis in red deer

article by T N Coulson et al published 22 March 1998 in Proceedings of the Royal Society B

Mining online genomic resources in Anolis carolinensis facilitates rapid and inexpensive development of cross-species microsatellite markers for the Anolis lizard genus

scientific article published in January 2011

Mitochondrial haplotype does not affect sperm velocity in the zebra finch Taeniopygia guttata

scientific article published on 23 December 2009

Mitochondrial haplotype does not influence sperm motility in a UK population of men.

scientific article published on 2 January 2012

Molecular evolution of the sheep prion protein gene

scientific article

Multiplex SNP-SCALE: a cost-effective medium-throughput single nucleotide polymorphism genotyping method

scientific article published in November 2008

Natural and sexual selection in a wild insect population

scientific article published in June 2010

No Evidence of Genetic Differentiation Between Anoles With Different Dewlap Color Patterns

article

No evidence for MHC class I-based disassortative mating in a wild population of great tits.

scientific article published on 23 February 2015

No evidence for warming climate theory of coat colour change in Soay sheep: a comment on Maloney et al.

scientific article published on 7 April 2010

Nonamplifying alleles at microsatellite loci: a caution for parentage and population studies

scientific article published on 01 April 1995

On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs

article

Partitioning of genetic variation across the genome using multimarker methods in a wild bird population.

scientific article published on 13 July 2013

Patterns of linkage disequilibrium in mitochondrial DNA of 16 ruminant populations

scientific article published in March 2003

Power to detect QTL in a free-living polygynous population

scientific article published on 01 September 1999

Pronounced inter- and intrachromosomal variation in linkage disequilibrium across the zebra finch genome

scientific article published on 31 March 2010

Quantitative trait loci (QTL) mapping of resistance to strongyles and coccidia in the free-living Soay sheep (Ovis aries)

Quantitative trait locus mapping in natural populations: progress, caveats and future directions.

scientific article

Rates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: a case study in the Antarctic fur seal.

scientific article published on 23 June 2012

Recent natural selection causes adaptive evolution of an avian polygenic trait.

scientific article

Red Carotenoid Coloration in the Zebra Finch Is Controlled by a Cytochrome P450 Gene Cluster

scientific article published on 18 May 2016

Replicated analysis of the genetic architecture of quantitative traits in two wild great tit populations

scientific article published on 10 December 2015

Replicated high-density genetic maps of two great tit populations reveal fine-scale genomic departures from sex-equal recombination rates.

scientific article published on 23 October 2013

Response to Perrier and Charmantier: On the importance of time scales when studying adaptive evolution.

scientific article published on 4 April 2019

Robust inference of genetic architecture in mapping studies

scientific article published in March 2017

Robustness of linkage maps in natural populations: a simulation study

scientific article published on 01 March 2008

SPERM MORPHOLOGY AND VELOCITY ARE GENETICALLY CODETERMINED IN THE ZEBRA FINCH

scientific article published on 22 June 2009

Scrapie genetics before the discovery of prions

article

Selection and microevolution of coat pattern are cryptic in a wild population of sheep

scientific article published on 20 March 2012

Selection on a genetic polymorphism counteracts ecological speciation in a stick insect

scientific article published on 25 June 2015

Sexual selection and interacting phenotypes in experimental evolution: a study of Drosophila pseudoobscura mating behavior

scientific article published in July 2008

Simple sequence repeats in zebra finch (Taeniopygia guttata) expressed sequence tags: a new resource for evolutionary genetic studies of passerines

scientific article published on 14 February 2007

Social and spatial effects on genetic variation between foraging flocks in a wild bird population.

scientific article

Sperm speed is associated with sex bias of siblings in a human population

scientific article published on 03 December 2012

Statistical confidence for likelihood‐based paternity inference in natural populations ⬇️

scientific article published on May 1, 1998

Terry Burke--recipient of the 2009 Molecular Ecology Prize

scientific article

The design and cross-population application of a genome-wide SNP chip for the great tit Parus major.

scientific article published on 5 April 2012

The easy road to genome-wide medium density SNP screening in a non-model species: development and application of a 10 K SNP-chip for the house sparrow (Passer domesticus).

scientific article

The evolutionary legacy of size-selective harvesting extends from genes to populations

scientific article published on 27 May 2015

The genetic architecture of sexually selected traits in two natural populations of Drosophila montana.

scientific article published on 22 July 2015

The genetic basis of recessive self-colour pattern in a wild sheep population

scientific article

The genome of a songbird

scientific article

The influence of nonrandom extra-pair paternity on heritability estimates derived from wild pedigrees

scientific article published on 27 April 2015

The maintenance of genetic polymorphism in small island populations: large mammals in the Hebrides

scientific article published in June 1996

Understanding genetic changes between generations

scientific article published on 11 January 2019

Using genomic prediction to detect microevolutionary change of a quantitative trait

scientific article published in 2022

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