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List of works by Sebastian Schmeier

A promoter-level mammalian expression atlas

scientific article

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

An atlas of combinatorial transcriptional regulation in mouse and man

scientific article

An atlas of human long non-coding RNAs with accurate 5' ends.

scientific article

An evaluation of function of multicopy non-coding RNAs in mammals using ENCODE/FANTOM data and comparative genomics.

scientific article published on 3 April 2018

Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection

scientific article

Computational Methods to Identify Transcription Factor Binding Sites Using CAGE Information

Contrasting patterns of coding and flanking region evolution in mammalian keratin associated protein-1 genes

scientific article published on 30 December 2018

DDEC: Dragon database of genes implicated in esophageal cancer

scientific article

DDPC: Dragon Database of Genes associated with Prostate Cancer

scientific article

DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining

scientific article published on 7 April 2017

Database for exploration of functional context of genes implicated in ovarian cancer

scientific article published on 12 September 2008

Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation

scientific article

Differential Targeting of c-Maf, Bach-1, and Elmo-1 by microRNA-143 and microRNA-365 Promotes the Intracellular Growth of in Alternatively IL-4/IL-13 Activated Macrophages

Distinct gut microbiome patterns associate with consensus molecular subtypes of colorectal cancer

scientific article

Finding kinetic parameters using text mining

scientific article published in January 2004

Genome-wide profiling of transcribed enhancers during macrophage activation

scientific article published on 23 October 2017

IL-4Rα-dependent alternative activation of macrophages is not decisive for Mycobacterium tuberculosis pathology and bacterial burden in mice

scientific article (publication date: 2015)

IRNdb: the database of immunologically relevant non-coding RNAs.

scientific article

Identification of estrogen responsive genes using esophageal squamous cell carcinoma (ESCC) as a model

scientific article

In Silico discovery of transcription factors as potential diagnostic biomarkers of ovarian cancer

scientific article

MACAT--microarray chromosome analysis tool

scientific article published on 30 November 2004

Metagenomics and transcriptomics data from human colorectal cancer

scientific article published on 05 July 2019

Molecular subtyping improves prognostication of Stage 2 colorectal cancer

scientific article published on 27 November 2019

Network analysis of microRNAs and their regulation in human ovarian cancer

scientific article

Prioritizing genes of potential relevance to diseases affected by sex hormones: an example of myasthenia gravis

scientific article

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.

scientific article

Simplified method to predict mutual interactions of human transcription factors based on their primary structure

scientific article

TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions

scientific article published on 26 October 2016

TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins

scientific article

Text mining for systems modeling

scientific article published in January 2011

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.

scientific article

Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection

scholarly article by Elena Denisenko et al published 22 January 2019 in BMC Genomics

dPORE-miRNA: polymorphic regulation of microRNA genes.

scientific article

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