List of works - Carles Pons

A PanorOmic view of personal cancer genomes

scientific article published on 27 April 2017

A framework for exhaustively mapping functional missense variants.

scientific article published on 21 December 2017

A gene-centered C. elegans protein-DNA interaction network provides a framework for functional predictions

scientific article published on 24 October 2016

A reference map of the human binary protein interactome

scientific article published on 08 April 2020

Cell-Dock: high-performance protein-protein docking.

scientific article published on 19 July 2012

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

scientific article

Computational paradigms for analyzing genetic interaction networks

Efficient Relaxation of Protein-Protein Interfaces by Discrete Molecular Dynamics Simulations

scientific article published on 28 December 2012

Enhancing the prediction of protein pairings between interacting families using orthology information

scientific article

Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges

scientific article published on 17 October 2013

Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network

scientific article published on 20 June 2013

FRODOCK: a new approach for fast rotational protein-protein docking

scientific article published on 20 July 2009

Features of the Chaperone Cellular Network Revealed through Systematic Interaction Mapping

scientific article

Genetic Interactions Implicating Postreplicative Repair in Okazaki Fragment Processing

scientific article published on 6 November 2015

H-bond network optimization in protein-protein complexes: Are all-atom force field scores enough?

scientific article published on 24 November 2011

Linking genetics to structural biology: complex heterozygosity screening with actin alanine scan alleles identifies functionally related surfaces on yeast actin

scientific article

Mechanisms of suppression: The wiring of genetic resilience.

scientific article published on 05 June 2017

On the Use of low-resolution Data to Improve Structure Prediction of Proteins and Protein Complexes

scientific article published in November 2009

Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding.

scientific article published in November 2010

Prediction and scoring of docking poses with pyDock.

scientific article published in December 2007

Prediction of protein-binding areas by small-world residue networks and application to docking

scientific article

Present and future challenges and limitations in protein-protein docking

scientific article

Pushing structural information into the yeast interactome by high-throughput protein docking experiments

scientific article

Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein−Protein Docking

scientific article published on 07 January 2011

Structural characterization of protein-protein complexes by integrating computational docking with small-angle scattering data

scientific article

Systematic analysis of complex genetic interactions.

scientific article

TSEMA: interactive prediction of protein pairings between interacting families

scientific article

Towards the prediction of protein interaction partners using physical docking

scientific article

Transcription Factor Activity Mapping of a Tissue-Specific in vivo Gene Regulatory Network.

scientific article

Validated Conformational Ensembles Are Key for the Successful Prediction of Protein Complexes

scientific article published on 4 March 2013

pyDockSAXS: protein-protein complex structure by SAXS and computational docking

scientific article published on 20 April 2015

pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring

scientific article published on 9 May 2013

List of works by Carles Pons

A PanorOmic view of personal cancer genomes

A framework for exhaustively mapping functional missense variants.

A gene-centered C. elegans protein-DNA interaction network provides a framework for functional predictions

A reference map of the human binary protein interactome

Cell-Dock: high-performance protein-protein docking.

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

Computational paradigms for analyzing genetic interaction networks

Efficient Relaxation of Protein-Protein Interfaces by Discrete Molecular Dynamics Simulations

Enhancing the prediction of protein pairings between interacting families using orthology information

Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges

Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network

FRODOCK: a new approach for fast rotational protein-protein docking

Features of the Chaperone Cellular Network Revealed through Systematic Interaction Mapping

Genetic Interactions Implicating Postreplicative Repair in Okazaki Fragment Processing

H-bond network optimization in protein-protein complexes: Are all-atom force field scores enough?

Linking genetics to structural biology: complex heterozygosity screening with actin alanine scan alleles identifies functionally related surfaces on yeast actin

Mechanisms of suppression: The wiring of genetic resilience.

On the Use of low-resolution Data to Improve Structure Prediction of Proteins and Protein Complexes

Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding.

Prediction and scoring of docking poses with pyDock.

Prediction of protein-binding areas by small-world residue networks and application to docking

Present and future challenges and limitations in protein-protein docking

Pushing structural information into the yeast interactome by high-throughput protein docking experiments

Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein−Protein Docking

Structural characterization of protein-protein complexes by integrating computational docking with small-angle scattering data

Systematic analysis of complex genetic interactions.

TSEMA: interactive prediction of protein pairings between interacting families

Towards the prediction of protein interaction partners using physical docking

Transcription Factor Activity Mapping of a Tissue-Specific in vivo Gene Regulatory Network.

Validated Conformational Ensembles Are Key for the Successful Prediction of Protein Complexes

pyDockSAXS: protein-protein complex structure by SAXS and computational docking

pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring