List of works - Jin Liu

"Similarity trap" in protein-protein interactions could be carcinogenic: simulations of p53 core domain complexed with 53BP1 and BRCA1 BRCT domains

scientific article published on December 2006

2D SMARTCyp reactivity-based site of metabolism prediction for major drug-metabolizing cytochrome P450 enzymes

scientific article published on 4 June 2012

A comparison of acetyl- and methoxycarbonylnitrenes by computational methods and a laser flash photolysis study of benzoylnitrene.

scientific article

A positive, growth-based PAM screen identifies noncanonical motifs recognized by the S. pyogenes Cas9

scientific article published on 15 July 2020

Allostery: An Overview of Its History, Concepts, Methods, and Applications

scientific article

Analogues of Arylamide Phenylpiperazine Ligands To Investigate the Factors Influencing D3 Dopamine Receptor Bitropic Binding and Receptor Subtype Selectivity

scientific article published on 30 July 2018

Assessing the Performance of the Nonbonded Mg2+ Models in a Two-Metal-Dependent Ribonuclease

scientific article published on 19 December 2018

Cas9-catalyzed DNA Cleavage Generates Staggered Ends: Evidence from Molecular Dynamics Simulations

scientific article published on 22 November 2016

Conformational Control of Ubiquitination in the Cullin-Ring E3 Ligase Machinery

Cullin neddylation may allosterically tune polyubiquitin chain length and topology

scientific article published on 12 January 2017

Does Cas9-Catalyzed DNA Cleavage Generate Blunt Ends or Staggered Ends? Insight from Molecular Dynamic Simulations

Dynamic binding mode of a Synaptotagmin-1-SNARE complex in solution

scientific article

Energetic redistribution in allostery to execute protein function

scientific article published on 10 July 2017

Flexible Cullins in Cullin-RING E3 Ligases Allosterically Regulate Ubiquitination ⬇️

scientific article published on September 20, 2011

Identification of a unique Ca2+-binding site in rat acid-sensing ion channel 3.

scientific article published on 25 May 2018

Identifying cytochrome p450 functional networks and their allosteric regulatory elements

scientific article (publication date: 2013)

Identifying key residues for protein allostery through rigid residue scan

scientific article

Intraplaque Hemorrhage Quantification Using Carotid Magnetic Resonance Imaging ⬇️

doctoral thesis by Jin Liu, University of Washington, 2017

Molecular Dynamics Simulations Reveal Distinct Conformational Changes of Three Cullins in Cullin-Ring E3 Ubiquitin Ligases

article

Molecular dynamics reveal the essential role of linker motions in the function of cullin-RING E3 ligases

scientific article

Principles of allosteric interactions in cell signaling

scientific article

Probing Protein Allostery as a Residue-Specific Concept via Residue Response Maps

scientific article published on 21 October 2019

Quantitative predictions of binding free energy changes in drug-resistant influenza neuraminidase

scientific article

Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery

scientific article

Searching For the Hinge of E3 Ubiquitin Ligase Machinery with MD Simulations

Stress and interferon signalling-mediated apoptosis contributes to pleiotropic anticancer responses induced by targeting NGLY1

scientific article published on 2 November 2018

Structural and functional insights into the catalytic state of Cas9 HNH nuclease domain

scientific article published on 30 July 2019

Structure and Dynamics of Cas9 HNH Domain Catalytic State.

scientific article published on 8 December 2017

Study of singlet and triplet 2,6-difluorophenylnitrene by time-resolved infrared spectroscopy

scientific article published in March 2005

Surface complexes of phthalic acid at the hematite/water interface

scientific article published on 22 December 2006

The Reaction of Triplet Nitrenes with Oxygen: A Computational Study

scientific article published on 01 February 2005

The mechanism of ubiquitination in the cullin-RING E3 ligase machinery: conformational control of substrate orientation

scientific article

List of works by Jin Liu

"Similarity trap" in protein-protein interactions could be carcinogenic: simulations of p53 core domain complexed with 53BP1 and BRCA1 BRCT domains

2D SMARTCyp reactivity-based site of metabolism prediction for major drug-metabolizing cytochrome P450 enzymes

A comparison of acetyl- and methoxycarbonylnitrenes by computational methods and a laser flash photolysis study of benzoylnitrene.

A positive, growth-based PAM screen identifies noncanonical motifs recognized by the S. pyogenes Cas9

Allostery: An Overview of Its History, Concepts, Methods, and Applications

Analogues of Arylamide Phenylpiperazine Ligands To Investigate the Factors Influencing D3 Dopamine Receptor Bitropic Binding and Receptor Subtype Selectivity

Assessing the Performance of the Nonbonded Mg2+ Models in a Two-Metal-Dependent Ribonuclease

Cas9-catalyzed DNA Cleavage Generates Staggered Ends: Evidence from Molecular Dynamics Simulations

Conformational Control of Ubiquitination in the Cullin-Ring E3 Ligase Machinery

Cullin neddylation may allosterically tune polyubiquitin chain length and topology

Does Cas9-Catalyzed DNA Cleavage Generate Blunt Ends or Staggered Ends? Insight from Molecular Dynamic Simulations

Dynamic binding mode of a Synaptotagmin-1-SNARE complex in solution

Energetic redistribution in allostery to execute protein function

Flexible Cullins in Cullin-RING E3 Ligases Allosterically Regulate Ubiquitination ⬇️

Identification of a unique Ca2+-binding site in rat acid-sensing ion channel 3.

Identifying cytochrome p450 functional networks and their allosteric regulatory elements

Identifying key residues for protein allostery through rigid residue scan

Intraplaque Hemorrhage Quantification Using Carotid Magnetic Resonance Imaging ⬇️

Molecular Dynamics Simulations Reveal Distinct Conformational Changes of Three Cullins in Cullin-Ring E3 Ubiquitin Ligases

Molecular dynamics reveal the essential role of linker motions in the function of cullin-RING E3 ligases

Principles of allosteric interactions in cell signaling

Probing Protein Allostery as a Residue-Specific Concept via Residue Response Maps

Quantitative predictions of binding free energy changes in drug-resistant influenza neuraminidase

Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery

Searching For the Hinge of E3 Ubiquitin Ligase Machinery with MD Simulations

Stress and interferon signalling-mediated apoptosis contributes to pleiotropic anticancer responses induced by targeting NGLY1

Structural and functional insights into the catalytic state of Cas9 HNH nuclease domain

Structure and Dynamics of Cas9 HNH Domain Catalytic State.

Study of singlet and triplet 2,6-difluorophenylnitrene by time-resolved infrared spectroscopy

Surface complexes of phthalic acid at the hematite/water interface

The Reaction of Triplet Nitrenes with Oxygen: A Computational Study

The mechanism of ubiquitination in the cullin-RING E3 ligase machinery: conformational control of substrate orientation