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List of works by Itai Yanai

A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells

scientific article published on September 2016

A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure

scientific article published on 21 September 2016

A genomic bias for genotype-environment interactions in C. elegans

scientific article published on 5 June 2012

A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans ⬇️

scientific article published on January 23, 2012

A periodic table of cell types

scientific article published on 27 June 2019

Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms

scientific article published on 15 May 2005

An avidin-like domain that does not bind biotin is adopted for oligomerization by the extracellular mosaic protein fibropellin

scientific article published on February 2005

An introduction to high-throughput sequencing experiments: design and bioinformatics analysis.

scientific article published on January 2013

Author Correction: Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas

scientific article published on 23 November 2020

Author Correction: The mid-developmental transition and the evolution of animal body plans

scientific article published on 01 November 2019

BLIND ordering of large-scale transcriptomic developmental timecourses.

scientific article published on 6 February 2014

Bimodal evolutionary developmental miRNA program in animal embryogenesis

scientific article published on 11 December 2017

CEL-Seq2-Single-Cell RNA Sequencing by Multiplexed Linear Amplification

scientific article published on 01 January 2019

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq

scientific article published on 28 April 2016

CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

scientific article

Computational biologists: moving to the driver's seat

scientific article published on 23 November 2017

Core promoter T-blocks correlate with gene expression levels in C. elegans

scientific article

Development and Evolution through the Lens of Global Gene Regulation

scientific article published on 20 October 2017

Developmental constraints shape the evolution of the nematode mid-developmental transition

scientific article published on 27 March 2017

Developmental milestones punctuate gene expression in the Caenorhabditis embryo.

scientific article published on 3 May 2012

Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity.

scientific article

ELOPER: elongation of paired-end reads as a pre-processing tool for improved de novo genome assembly.

scientific article

Evolution of gene fusions: horizontal transfer versus independent events

scientific article

Forty years of The Selfish Gene are not enough

scientific article

Gene length and expression level shape genomic novelties

scientific article published on 11 July 2014

GeneAnnot: comprehensive two-way linking between oligonucleotide array probesets and GeneCards genes

scientific article published on 12 February 2004

GeneAnnot: interfacing GeneCards with high-throughput gene expression compendia.

scientific article

Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification

scientific article published on 23 September 2004

Getting started in gene expression microarray analysis

scientific article

Identifying functional links between genes by evolutionary transcriptomics.

scientific article published in October 2012

Identifying functional links between genes using conserved chromosomal proximity

scientific article published on 01 April 2002

Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control

scientific article published on 01 January 2004

Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas

scientific article published on 13 January 2020

It's about time: studying gene regulatory programs across serial organs

scientific article published on 16 February 2017

Mapping gene expression in two Xenopus species: evolutionary constraints and developmental flexibility.

scientific article

Modular genes with metazoan-specific domains have increased tissue specificity

scientific article published in April 2005

Natural RNA interference directs a heritable response to the environment

scientific article published on 09 December 2014

New skin for the old RNA-Seq ceremony: the age of single-cell multi-omics.

scientific article published on 24 August 2017

New type of polyubiquitin-like genes with intein-like autoprocessing domains

scientific article

Night science

scientific article published on 28 August 2019

Pairing of competitive and topologically distinct regulatory modules enhances patterned gene expression.

scientific article

Phylogenetic debugging of a complete human biosynthetic pathway transplanted into yeast

scientific article published on 01 January 2020

Plasticity and Clonality of Cancer Cell States

scientific article published on 14 October 2019

Predictome: a database of putative functional links between proteins

scientific article

Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856.

scientific article published on 19 May 2015

Renaissance minds in 21st century science

scientific article published on 13 March 2020

Revealing developmental networks by comparative transcriptomics

scientific article (publication date: November 2010)

Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage

scientific article published in Science

Seeing is believing: new methods for in situ single-cell transcriptomics.

scientific article published on 31 March 2014

Signatures of medical student applicants and academic success

scientific article published on 15 January 2020

Similar gene expression profiles do not imply similar tissue functions

scientific article

Spatial localization of co-regulated genes exceeds genomic gene clustering in the Saccharomyces cerevisiae genome

scientific article published on 8 January 2013

Spatiotemporal Gene Expression Analysis of the Caenorhabditis elegans Germline Uncovers a Syncytial Expression Switch

scientific article published on 09 August 2018

Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer

scientific article

The gene regulatory program of Acrobeloides nanus reveals conservation of phylum-specific expression.

scientific article published on 6 April 2018

The genomic determinants of genotype × environment interactions in gene expression ⬇️

scientific article published on June 13, 2013

The integrated world of functional genomics

scientific article

The mid-developmental transition and the evolution of animal body plans

scientific article

The society of genes: networks of functional links between genes from comparative genomics

scientific article

Toward an unbiased evolutionary platform for unraveling Xenopus developmental gene networks.

scientific article published on 05 January 2012

What is the question?

scientific article published on 19 December 2019

Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates

scientific article published on 01 January 2020

Widespread ectopic expression of olfactory receptor genes

scientific article published on 22 May 2006

scDual-Seq: mapping the gene regulatory program of Salmonella infection by host and pathogen single-cell RNA-sequencing

scientific article published on 27 October 2017

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